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HeH_SNParry

This dataset included 110 samples with high hyperdiploid acute lymphoblastic leukemia that were genotyped using Affymetrix SNP Array or Illumina's BeadArray platform.

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Access to individual-level genotype data is available by application to the High hyperdiploid ALL SNP array data Data Access Commitee

DATA ACCESS AGREEMENT between Lund University, P. O. Box 117, SE-221 00 Lund, Sweden, (hereinafter referred to as the “University”); and [name], [address], (hereinafter referred to as the “Recipient”); each a ‘Party’ and together the ‘Parties’. This agreement (the “Agreement”) is made on the last day of signature here below (the “Agreement Date”). BACKGROUND (A) The University’s Department of Laboratory Medicine, Division of Clinical Genetics is the owner of human genetic data relating to the research article by Woodward et al. regarding clonal origin and development of high hyperdiploidy in childhood acute lymphoblastic leukemia, for which the University has received approval from the Regional Ethics Committee (Regionala Etikprövningsnämnden) under the permission number Dnr 2011/289, updated 2017/796 (B) Pursuant to the request by the Recipient, the University has agreed to make the Data available to it for research purposes. OPERATIVE TERMS 1 Definitions and Interpretation 1.1 “User” means a researcher (or an individual conducting Research under the supervision of a researcher) who is employed by the Recipient and is bound by the terms and conditions of this Agreement. For the avoidance of doubt, “User” may also include students, visiting academics, contractors, sub-contractors or independent consultants provided that any such individual is bound by obligations no less onerous then those binding the Recipient’s employees. 1.2 ‘”Data” means the human genetic data obtained by the University. 1.3 “Data Subjects” means the individual to whom Data refers. 2 Access to Data 2.1 In consideration of the University agreeing to supply the Data to the Recipient, the Recipient agrees to be bound by the terms and conditions of this Agreement. The Recipient shall ensure that all Users are aware of and comply with the terms of the Agreement. 2.2 Recipient shall only use Data for the advancement of non-commercial biomedical research as specified in the data application form provided by the University and attached hereto as Appendix 1. 2.3 The Recipient agrees to only give access to Data, in whole or part, or any identifiable material derived from the Data, to Users. The Recipient agrees that before it gives any User access to Data, it shall first show the User a copy of this Agreement and shall inform the User that he or she must comply with the obligations contained in this Agreement and sign up to the provisions of this Agreement in the form set out at the end of this Agreement. The Recipient shall provide the University with a copy of the User’s acceptance form within thirty (30) days of the date of acceptance by the User. 2.4 The Recipient shall refer to the University all requests from third parties/persons not working under the direct supervision of the Recipient for supplies of the Data. 3 Data protection and confidentiality 3.1 Recipient agrees to comply with EU legislation on data protection when processing Data and to preserve, at all times, the confidentiality of the Data. Recipient further agrees to not attempt to identify the Data Subjects, redistribute the Data, or any subset or derivative of the Data, that could be used to identify the Data Subject, or in any other way compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 3.2 Where required under applicable laws regulating cross-border transfers of Personal Data, including European data protection laws, the parties, or their affiliates, will execute any further agreements or undertakings required to enable the lawful transfer of Personal Data, including where appropriate the EU standard contractual clauses for transfers of Personal Data to non-EU data processors set out in European Commission Decision 2010/87/EC of 5 February 2010 available at: http://eurlex.europa.eu/LexUriServ/LexUriServ.do?uri=OJ:L:2010:039:0005:0018:EN:PDF or such standard contractual clauses as are then in force. 3.3 The Recipient agrees that it shall take all reasonable security precautions to keep the Data confidential, such precautions to be no less onerous than those applied in respect of the Recipient’s own confidential information. 4 Errors The Recipient agrees to notify the University of any errors detected in the Data. 5 Ownership of the Data 5.1 The Data and all intellectual property in them shall at all times remain the property of the University. 5.2 The Recipient and its Users shall have the right to develop Intellectual Property based on comparisons with their own data. Recipient and User recognise that nothing in this agreement shall operate to transfer to the Recipient any intellectual property rights relating to the Data. 6 Publications and reporting 6.1 The Recipient agrees to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the Data, and the role of the University in its distribution. The Recipient will also declare in any such work that those who carried out the original analysis and collection of the Data bear no responsibility for the further analysis or interpretation of it by the Recipient. The Recipient undertakes that the Data and Confidential Information will only be used by the Recipient and Users for the sole purpose of the academic research and will not be used for any commercial purpose or commercially sponsored research. 6.2 The Recipient agrees to follow the Publication Policy in Appendix I. This includes respecting the moratorium period for the University to publish the first peer-reviewed report describing and analysing the Data. 7 Warranties 7.1 The Recipient accepts and agrees that the Data are experimental in nature and that they are supplied by the University on an ‘as is’ basis. The University makes no representation and gives no warranty or undertaking in relation to them whatsoever and excludes all implied warranties to the fullest extent permitted by law; 7.2 In particular, the University makes no representations or warranties, express or implied: • as to title, quality or fitness for a particular purpose or use of the Data; or • that the supply by the University or the use by the Recipient of the Data will not infringe the intellectual property rights of any third party. 7.3 The Recipient warrants that, in relation to the Data and their use: • they will comply with all relevant legislation and regulations; and • they have obtained all necessary consents and ethical approvals. 8 Liability 8.1 The University accepts no liability for loss of data, loss of profit, business or goodwill and all other indirect or consequential loss or damage suffered or incurred by the Recipient or by any other person arising from the supply of the Data or the use, keeping, or disposal of the Data. 8.2 The Recipient shall defend, indemnify and hold the University, its officers, employees and agents harmless against any loss, claim, damage or liability including reasonable legal costs and fees (of whatsoever kind or nature) which may arise in connection with the Recipient’s breach of this Agreement or the use, keeping, production or disposal of the Recipient or on its behalf, unless caused by the University’s gross negligence or wilful act or omission. 9 Termination 9.1 This Agreement shall take effect from the Agreement Date and will terminate on a Party giving 30 days’ prior written notice to the other; or upon breach by the Recipient or Users of any of the terms of this Agreement. 9.2 Upon termination of this Agreement or upon service of notice of termination by a Party for any reason whatsoever, the Recipient shall discontinue its use of the Data and shall, in accordance with the directions of the University, at its own cost and expense destroy the Data or return it to the University. 10 Notices 10.1 The Recipient will do all such acts and execute such documents as are required by the University to give effect to the terms of this Agreement or to enable the University to enjoy the full benefit of this Agreement (including but not limited to ownership of the Data and the arising intellectual property). 10.2 Recipient accepts that it may be necessary for the University or its appointed agent to alter the terms of this Agreement from time to time in order to address new concerns. In this event, the University or its appointed agent will contact Recipient to inform Recipient of any changes and Recipient agrees that Recipient’s continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 10.3 The Recipient may not assign or transfer all or any of its rights or obligations under this Agreement without the prior written consent of the University. 10.4 This Agreement is subject to Swedish substantive law. 10.5 Any dispute, controversy or claim arising out of or in connection with this Agreement, or the breach, termination or invalidity thereof, shall be solved by Swedish courts. This Agreement has been drawn up in two (2) original copies, each Party receiving one duly signed copy thereof. Signed …………………………….. Signed ……………………………… Authorised signature for and on behalf of Lund University Authorised signature for and on behalf of Recipient [please fill in the name of recipient] Name Name Position Position Dated Dated For the User (s):I acknowledge that I have read and understand the terms of this Agreement Signed ……………………………… Name Position Dated APPENDIX I –– PUBLICATION POLICY   APPENDIX I –– PUBLICATION POLICY The University intend to publish the results of their analysis of this dataset and do not consider its deposition into public databases to be the equivalent of such publications. The University anticipate that the dataset could be useful to other qualified researchers for a variety of purposes. However, some areas of work are subject to a publication moratorium. The publication moratorium covers any publications (including oral communications) that describe the use of the Data. For research papers, submission for publication should not occur until twelve (12) months after the Data were first made available on the relevant hosting database.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007049 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00007974247 txt 53.2 MB
EGAF00007974248 CEL 69.0 MB
EGAF00007974249 txt 53.2 MB
EGAF00007974250 txt 53.2 MB
EGAF00007974251 txt 50.7 MB
EGAF00007974252 txt 194.9 MB
EGAF00007974253 CEL 69.0 MB
EGAF00007974254 txt 53.2 MB
EGAF00007974255 txt 195.0 MB
EGAF00007974256 txt 53.2 MB
EGAF00007974257 txt 53.2 MB
EGAF00007974258 txt 53.3 MB
EGAF00007974259 txt 50.8 MB
EGAF00007974260 CEL 69.1 MB
EGAF00007974261 txt 53.3 MB
EGAF00007974262 txt 53.3 MB
EGAF00007974263 txt 53.2 MB
EGAF00007974264 CEL 69.0 MB
EGAF00007974265 txt 53.3 MB
EGAF00007974266 txt 53.2 MB
EGAF00007974267 txt 53.2 MB
EGAF00007974268 txt 53.3 MB
EGAF00007974269 txt 53.2 MB
EGAF00007974270 txt 53.3 MB
EGAF00007974271 txt 53.3 MB
EGAF00007974272 txt 195.0 MB
EGAF00007974273 txt 194.9 MB
EGAF00007974274 txt 53.2 MB
EGAF00007974275 txt 53.3 MB
EGAF00007974276 txt 53.2 MB
EGAF00007974277 txt 53.2 MB
EGAF00007974278 CEL 69.0 MB
EGAF00007974279 txt 53.2 MB
EGAF00007974280 txt 50.7 MB
EGAF00007974281 txt 53.2 MB
EGAF00007974282 txt 53.3 MB
EGAF00007974283 CEL 69.0 MB
EGAF00007974284 txt 50.5 MB
EGAF00007974285 txt 51.1 MB
EGAF00007974286 txt 53.3 MB
EGAF00007974287 txt 53.3 MB
EGAF00007974288 txt 53.3 MB
EGAF00007974289 txt 53.2 MB
EGAF00007974290 txt 53.3 MB
EGAF00007974291 CEL 69.0 MB
EGAF00007974292 txt 50.7 MB
EGAF00007974293 txt 53.3 MB
EGAF00007974294 txt 53.3 MB
EGAF00007974295 txt 53.3 MB
EGAF00007974296 txt 50.5 MB
EGAF00007974297 CEL 69.0 MB
EGAF00007974298 txt 53.3 MB
EGAF00007974299 txt 53.3 MB
EGAF00007974300 txt 53.2 MB
EGAF00007974301 txt 50.8 MB
EGAF00007974302 txt 53.3 MB
EGAF00007974303 txt 195.0 MB
EGAF00007974304 txt 53.2 MB
EGAF00007974305 txt 53.2 MB
EGAF00007974306 txt 53.2 MB
EGAF00007974307 CEL 69.0 MB
EGAF00007974308 CEL 69.0 MB
EGAF00007974309 txt 53.3 MB
EGAF00007974310 CEL 69.0 MB
EGAF00007974311 txt 53.3 MB
EGAF00007974312 txt 53.3 MB
EGAF00007974313 CEL 69.0 MB
EGAF00007974314 CEL 69.1 MB
EGAF00007974315 txt 53.2 MB
EGAF00007974316 txt 53.2 MB
EGAF00007974317 txt 50.8 MB
EGAF00007974318 txt 53.3 MB
EGAF00007974319 txt 53.2 MB
EGAF00007974320 txt 53.2 MB
EGAF00007974321 CEL 69.0 MB
EGAF00007974322 txt 50.8 MB
EGAF00007974323 txt 53.3 MB
EGAF00007974324 CEL 69.0 MB
EGAF00007974325 txt 53.3 MB
EGAF00007974326 txt 53.3 MB
EGAF00007974327 txt 53.3 MB
EGAF00007974328 txt 50.7 MB
EGAF00007974329 txt 53.2 MB
EGAF00007974330 txt 53.3 MB
EGAF00007974331 txt 53.3 MB
EGAF00007974332 CEL 69.0 MB
EGAF00007974333 txt 53.2 MB
EGAF00007974334 txt 53.3 MB
EGAF00007974335 txt 53.2 MB
EGAF00007974336 txt 53.3 MB
EGAF00007974337 txt 53.2 MB
EGAF00007974338 CEL 69.0 MB
EGAF00007974339 txt 53.2 MB
EGAF00007974340 txt 53.2 MB
EGAF00007974341 txt 53.3 MB
EGAF00007974342 txt 53.2 MB
EGAF00007974343 txt 53.3 MB
EGAF00007974344 txt 53.3 MB
EGAF00007974345 txt 195.0 MB
EGAF00007974346 txt 53.3 MB
EGAF00007974347 txt 194.9 MB
EGAF00007974348 txt 53.3 MB
EGAF00007974349 txt 52.9 MB
EGAF00007974350 txt 50.5 MB
EGAF00007974351 CEL 69.0 MB
EGAF00007974352 txt 53.2 MB
EGAF00007974353 txt 53.3 MB
EGAF00007974354 CEL 69.0 MB
EGAF00007974355 txt 53.3 MB
EGAF00007974356 txt 53.2 MB
110 Files (7.1 GB)