Genotypic data of the individuals in HPP project

Dataset contains imputed SNP genetics data for human phenotype project https://humanphenotypeproject.org/. The samples are genotypes of 8958 individuals that underwent genetic sequencing based on buccal swab.Sequencing is performed at Neogen GeneSeek Laboratories using Illumina Novaseq at low-pass, targeting coverage levels of 0.5Ã— and 1Ã—. Imputation was done using loimpute-v0.1.0 over the aligned reads. Imputation is done for the autosomal chromosomes (1-22) using The 1000 Genomes phase 3 haplotypes (1KGP3) as a reference panel. The samples are provided in merged PLINK 1 binaries (.bed/.bim/.fam)

27/03/2025
8958 samples
DAC: EGAC00001003214
Technology: Gencove

Access Policy1 Study 3 Files (85.1 GB)

Metadata

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HPP policy for accessing genotypes data

This is the policy to access genotypes data in human phenotype project (HPP)

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001008040	The Human Phenotype Project (HPP) is a large-scale deep-phenotype prospective longitudinal and ethnically diverse cohort	Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size
EGAF00008664031	fam	373.5 kB
EGAF00008664032	bed	84.1 GB
EGAF00008664033	bim	1.0 GB
3 Files (85.1 GB)