About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Genotyping microarray data of molecular tumorboard patients in the context of the HRD-manuscript published in IJC

Intensity files (.idat) derived from the Infinium CytoSNP-850K BeadChip microarray (Illumina) were used to analzye a possible Homologous-Recombination-Repair Deficiency (Molecular Rationale for a PARP-Inhibitor therapy) of n= 39 tumor patients (each n= 39 .idat files of the green and red chanel respectively) presented in the Molecular Tumorboard at the University Hospital Erlangen. Using these files a Genomic Instability Score was bioinformatically deducted (R-based scripts, e.g. ASCAT, scarHRD) based upon the presence of three parameteres "Loss of Heterozygosity, LOH", "Large Scale Transitions, LST" and "Telomeric Allelic Imbalances, TAIs". The associated manuscript is published in International Journal of Cancer, IJC.

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HRD-manuscript_Microarray_CytoSNP-Data

These data can be used in general for any research purpose.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001008063 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00008708471 idat 11.6 MB
EGAF00008708472 idat 11.6 MB
EGAF00008708473 idat 11.6 MB
EGAF00008708474 idat 11.6 MB
EGAF00008708475 idat 11.6 MB
EGAF00008708476 idat 11.6 MB
EGAF00008708477 idat 11.6 MB
EGAF00008708478 idat 11.6 MB
EGAF00008708479 idat 11.6 MB
EGAF00008708480 idat 11.6 MB
EGAF00008708481 idat 11.6 MB
EGAF00008708482 idat 11.6 MB
EGAF00008708483 idat 11.2 MB
EGAF00008708484 idat 11.6 MB
EGAF00008708485 idat 11.6 MB
EGAF00008708486 idat 11.6 MB
EGAF00008708487 idat 11.6 MB
EGAF00008708488 idat 11.6 MB
EGAF00008708489 idat 11.6 MB
EGAF00008708490 idat 11.6 MB
EGAF00008708491 idat 11.6 MB
EGAF00008708492 idat 11.6 MB
EGAF00008708493 idat 11.6 MB
EGAF00008708494 idat 11.6 MB
EGAF00008708495 idat 11.6 MB
EGAF00008708496 idat 11.6 MB
EGAF00008708497 idat 11.6 MB
EGAF00008708498 idat 11.6 MB
EGAF00008708499 idat 11.6 MB
EGAF00008708500 idat 11.6 MB
EGAF00008708501 idat 11.6 MB
EGAF00008708502 idat 11.6 MB
EGAF00008708503 idat 11.6 MB
EGAF00008708504 idat 11.2 MB
EGAF00008708505 idat 11.6 MB
EGAF00008708506 idat 11.6 MB
EGAF00008708507 idat 11.6 MB
EGAF00008708508 idat 11.6 MB
EGAF00008708509 idat 11.6 MB
EGAF00008708510 idat 11.6 MB
EGAF00008708511 idat 11.6 MB
EGAF00008708512 idat 11.6 MB
EGAF00008708513 idat 11.6 MB
EGAF00008708514 idat 11.6 MB
EGAF00008708515 idat 11.6 MB
EGAF00008708516 idat 11.6 MB
EGAF00008708517 idat 11.6 MB
EGAF00008708518 idat 11.6 MB
EGAF00008708519 idat 11.6 MB
EGAF00008708520 idat 11.6 MB
EGAF00008708521 idat 11.6 MB
EGAF00008708522 idat 11.6 MB
EGAF00008708523 idat 11.6 MB
EGAF00008708524 idat 11.6 MB
EGAF00008708525 idat 11.6 MB
EGAF00008708526 idat 11.6 MB
EGAF00008708527 idat 11.6 MB
EGAF00008708528 idat 11.6 MB
EGAF00008708529 idat 11.6 MB
EGAF00008708530 idat 11.6 MB
EGAF00008708531 idat 11.6 MB
EGAF00008708532 idat 11.6 MB
EGAF00008708533 idat 11.6 MB
EGAF00008708534 idat 11.6 MB
EGAF00008708535 idat 11.6 MB
EGAF00008708536 idat 11.6 MB
EGAF00008708537 idat 11.6 MB
EGAF00008708538 idat 11.6 MB
EGAF00008708539 idat 11.6 MB
EGAF00008708540 idat 11.6 MB
EGAF00008708541 idat 11.6 MB
EGAF00008708542 idat 11.6 MB
EGAF00008708543 idat 11.6 MB
EGAF00008708544 idat 11.6 MB
EGAF00008708545 idat 11.6 MB
EGAF00008708546 idat 11.6 MB
EGAF00008708547 idat 11.6 MB
77 Files (890.3 MB)