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DNA methylation EPIC array

This dataset includes IDAT files from 424 AML samples. The samples were profiled using the Illumina Infinium Methylation EPIC array.

Request Access

DUO:0000019
version: 2021-02-23

publication required

This data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.

DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

This Data Access Agreement is to allow a researcher’s institution (“User Institution”) to seek approval from the Department of Pathology and Tumor Biology, Kyoto University Data Access Committee to allow Approved Personnel at User Institution to access the datasets available in the EGA for the purpose of conducting research.

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom Kyoto University grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Kyoto University and the collaborators listed in Appendix I responsible for the development, organization, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. Kyoto University: Department of Pathology and Tumor Biology, Kyoto University. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organization for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Kyoto University within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Kyoto University prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Kyoto University as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Kyoto University may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Kyoto University. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Japan and shall be subject to the exclusive jurisdiction of the Japanese courts. APPENDIX I – DATASET DETAILS APPENDIX II ––PROJECT DETAILS APPENDIX III –– PUBLICATION POLICY In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGAS00000000029), and acknowledge its use in a form agreed by the User Institution with Department of Pathology and Tumor Biology, Kyoto University.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001008315 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF00008938806 idat 13.7 MB
EGAF00008938807 idat 13.7 MB
EGAF00008938808 idat 13.7 MB
EGAF00008938809 idat 13.7 MB
EGAF00008938810 idat 13.7 MB
EGAF00008938811 idat 13.7 MB
EGAF00008938812 idat 13.7 MB
EGAF00008938813 idat 13.7 MB
EGAF00008938814 idat 13.7 MB
EGAF00008938815 idat 13.7 MB
EGAF00008938816 idat 13.7 MB
EGAF00008938817 idat 13.7 MB
EGAF00008938818 idat 13.7 MB
EGAF00008938819 idat 13.7 MB
EGAF00008938820 idat 13.7 MB
EGAF00008938821 idat 13.7 MB
EGAF00008938822 idat 13.7 MB
EGAF00008938823 idat 13.7 MB
EGAF00008938824 idat 13.7 MB
EGAF00008938825 idat 13.7 MB
EGAF00008938826 idat 13.7 MB
EGAF00008938827 idat 13.7 MB
EGAF00008938828 idat 13.7 MB
EGAF00008938829 idat 13.7 MB
EGAF00008938830 idat 13.7 MB
EGAF00008938831 idat 13.7 MB
EGAF00008938832 idat 13.7 MB
EGAF00008938833 idat 13.7 MB
EGAF00008938834 idat 13.7 MB
EGAF00008938835 idat 13.7 MB
EGAF00008938836 idat 13.7 MB
EGAF00008938837 idat 13.7 MB
EGAF00008938838 idat 13.7 MB
EGAF00008938839 idat 13.7 MB
EGAF00008938840 idat 13.7 MB
EGAF00008938841 idat 13.7 MB
EGAF00008938842 idat 13.7 MB
EGAF00008938843 idat 13.7 MB
EGAF00008938844 idat 13.7 MB
EGAF00008938845 idat 13.7 MB
EGAF00008938846 idat 13.7 MB
EGAF00008938847 idat 13.7 MB
EGAF00008938848 idat 13.7 MB
EGAF00008938849 idat 13.7 MB
EGAF00008938850 idat 13.7 MB
EGAF00008938851 idat 13.7 MB
EGAF00008938852 idat 13.7 MB
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EGAF00008938864 idat 13.7 MB
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EGAF00008938866 idat 13.7 MB
EGAF00008938867 idat 13.7 MB
EGAF00008938868 idat 13.7 MB
EGAF00008938869 idat 13.7 MB
EGAF00008938870 idat 13.7 MB
EGAF00008938871 idat 13.7 MB
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EGAF00008938898 idat 13.7 MB
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EGAF00008938900 idat 13.7 MB
EGAF00008938901 idat 13.7 MB
EGAF00008938902 idat 13.7 MB
EGAF00008938903 idat 13.7 MB
EGAF00008938904 idat 13.7 MB
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EGAF00008938906 idat 13.7 MB
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EGAF00008938908 idat 13.7 MB
EGAF00008938909 idat 13.7 MB
EGAF00008938910 idat 13.7 MB
EGAF00008938911 idat 13.7 MB
EGAF00008938912 idat 13.7 MB
EGAF00008938913 idat 13.7 MB
EGAF00008938914 idat 13.7 MB
EGAF00008938915 idat 13.7 MB
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EGAF00008938917 idat 13.7 MB
EGAF00008938918 idat 13.7 MB
EGAF00008938919 idat 13.7 MB
EGAF00008938920 idat 13.7 MB
EGAF00008938921 idat 13.7 MB
EGAF00008938922 idat 13.7 MB
EGAF00008938923 idat 13.7 MB
EGAF00008938924 idat 13.7 MB
EGAF00008938925 idat 13.7 MB
EGAF00008938926 idat 13.7 MB
EGAF00008938927 idat 13.7 MB
EGAF00008938928 idat 13.7 MB
EGAF00008938929 idat 13.7 MB
EGAF00008938930 idat 13.7 MB
EGAF00008938931 idat 13.7 MB
EGAF00008938932 idat 13.7 MB
EGAF00008938933 idat 13.7 MB
EGAF00008938934 idat 13.7 MB
EGAF00008938935 idat 13.7 MB
EGAF00008938936 idat 13.7 MB
EGAF00008938937 idat 13.7 MB
EGAF00008938938 idat 13.7 MB
EGAF00008938939 idat 13.7 MB
EGAF00008938940 idat 13.7 MB
EGAF00008938941 idat 13.7 MB
EGAF00008938942 idat 13.7 MB
EGAF00008938943 idat 13.7 MB
EGAF00008938944 idat 13.7 MB
EGAF00008938945 idat 13.7 MB
EGAF00008938946 idat 13.7 MB
EGAF00008938947 idat 13.7 MB
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EGAF00008938949 idat 13.7 MB
EGAF00008938950 idat 13.7 MB
EGAF00008938951 idat 13.7 MB
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EGAF00008938953 idat 13.7 MB
EGAF00008938954 idat 13.7 MB
EGAF00008938955 idat 13.7 MB
EGAF00008938956 idat 13.7 MB
EGAF00008938957 idat 13.7 MB
EGAF00008938958 idat 13.7 MB
EGAF00008938959 idat 13.7 MB
EGAF00008938960 idat 13.7 MB
EGAF00008938961 idat 13.7 MB
EGAF00008938962 idat 13.7 MB
EGAF00008938963 idat 13.7 MB
EGAF00008938964 idat 13.7 MB
EGAF00008938965 idat 13.7 MB
EGAF00008938966 idat 13.7 MB
EGAF00008938967 idat 13.7 MB
EGAF00008938968 idat 13.7 MB
EGAF00008938969 idat 13.7 MB
EGAF00008938970 idat 13.7 MB
EGAF00008938971 idat 13.7 MB
EGAF00008938972 idat 13.7 MB
EGAF00008938973 idat 13.7 MB
EGAF00008938974 idat 13.7 MB
EGAF00008938975 idat 13.7 MB
EGAF00008938976 idat 13.7 MB
EGAF00008938977 idat 13.7 MB
EGAF00008938978 idat 13.7 MB
EGAF00008938979 idat 13.7 MB
EGAF00008938980 idat 13.7 MB
EGAF00008938981 idat 13.7 MB
EGAF00008938982 idat 13.7 MB
EGAF00008938983 idat 13.7 MB
EGAF00008938984 idat 13.7 MB
EGAF00008938985 idat 13.7 MB
EGAF00008938986 idat 13.7 MB
EGAF00008938987 idat 13.7 MB
EGAF00008938988 idat 13.7 MB
EGAF00008938989 idat 13.7 MB
EGAF00008938990 idat 13.7 MB
EGAF00008938991 idat 13.7 MB
EGAF00008938992 idat 13.7 MB
EGAF00008938993 idat 13.7 MB
EGAF00008938994 idat 13.7 MB
EGAF00008938995 idat 13.7 MB
EGAF00008938996 idat 13.7 MB
EGAF00008938997 idat 13.7 MB
EGAF00008938998 idat 13.7 MB
EGAF00008938999 idat 13.7 MB
EGAF00008939000 idat 13.7 MB
EGAF00008939001 idat 13.7 MB
EGAF00008939002 idat 13.7 MB
EGAF00008939003 idat 13.7 MB
EGAF00008939004 idat 13.7 MB
EGAF00008939005 idat 13.7 MB
EGAF00008939006 idat 13.7 MB
EGAF00008939007 idat 13.7 MB
EGAF00008939008 idat 13.7 MB
EGAF00008939009 idat 13.7 MB
EGAF00008939010 idat 13.7 MB
EGAF00008939011 idat 13.7 MB
EGAF00008939012 idat 13.7 MB
EGAF00008939013 idat 13.7 MB
EGAF00008939014 idat 14.4 MB
EGAF00008939015 idat 14.4 MB
EGAF00008939016 idat 14.4 MB
EGAF00008939017 idat 14.4 MB
EGAF00008939018 idat 14.4 MB
EGAF00008939019 idat 14.4 MB
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EGAF00008939021 idat 14.4 MB
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EGAF00008939024 idat 14.4 MB
EGAF00008939025 idat 14.4 MB
EGAF00008939026 idat 14.4 MB
EGAF00008939027 idat 14.4 MB
EGAF00008939028 idat 14.4 MB
EGAF00008939029 idat 14.4 MB
EGAF00008939030 idat 14.4 MB
EGAF00008939031 idat 14.4 MB
EGAF00008939032 idat 14.4 MB
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EGAF00008939043 idat 14.4 MB
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EGAF00008939045 idat 14.4 MB
EGAF00008939046 idat 14.4 MB
EGAF00008939047 idat 14.4 MB
EGAF00008939048 idat 14.4 MB
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EGAF00008939062 idat 14.4 MB
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EGAF00008939064 idat 14.4 MB
EGAF00008939065 idat 14.4 MB
EGAF00008939066 idat 14.4 MB
EGAF00008939067 idat 14.4 MB
EGAF00008939068 idat 14.4 MB
EGAF00008939069 idat 14.4 MB
EGAF00008939070 idat 14.4 MB
EGAF00008939071 idat 14.4 MB
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EGAF00008939073 idat 14.4 MB
EGAF00008939074 idat 14.4 MB
EGAF00008939075 idat 14.4 MB
EGAF00008939076 idat 14.4 MB
EGAF00008939077 idat 14.4 MB
EGAF00008939078 idat 14.4 MB
EGAF00008939079 idat 14.4 MB
EGAF00008939080 idat 14.4 MB
EGAF00008939081 idat 14.4 MB
EGAF00008939082 idat 14.4 MB
EGAF00008939083 idat 14.4 MB
EGAF00008939084 idat 14.4 MB
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EGAF00008939086 idat 14.4 MB
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EGAF00008939091 idat 14.4 MB
EGAF00008939092 idat 14.4 MB
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EGAF00008939096 idat 14.4 MB
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EGAF00008939099 idat 14.4 MB
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848 Files (12.0 GB)