About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Pacbio_methylation_cases

The PacBio cases dataset for differential methylation analysis included 10 case samples with known KMT2A loss-of-function variants, 2 VUS samples. All samples were sequenced using PacBio Revio® HiFi reads at a matched coverage of 15X, and methylation was called using pb-cpg-tools on aligned BAM files.

Request Access

Policy for Pacbio Methylation Human Genetics Radboudumc

Access to this data set will be granted to research institutions for academic purposes following a request made to the Data Access Committee (DAC; EGAC00001003397). Please submit your data access request to the DAC and include a clear description of the purpose of the data access in your request.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001008250 Epigenetics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00008989853 bed 1.3 GB
EGAF00008989857 bed 1.3 GB
EGAF00008989861 bed 1.3 GB
EGAF00008989870 bed 1.3 GB
EGAF00008989874 bed 1.3 GB
EGAF00008989875 bed 1.3 GB
EGAF00008989879 bed 1.3 GB
EGAF00008989884 bed 1.3 GB
EGAF00008989887 bed 1.3 GB
EGAF00008989888 bed 1.2 GB
EGAF00008989891 bed 1.2 GB
EGAF00008989895 bed 1.3 GB
EGAF00008989900 bed 1.2 GB
EGAF00008989903 bed 1.3 GB
14 Files (17.7 GB)