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As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

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Non-invasive anal (pre)cancer dataset

Molecular analysis of DNA from human anal swabs offers a non-invasive method for anal cancer screening. Current guidelines recommend anal swab-based screening and highlight the need for objective biomarkers to improve risk stratification. We performed genome-wide methylation profiling on DNA from 86 anal swab samples, including 40 HSIL-AIN3 cases (high-grade squamous intraepithelial lesions), 39 controls (<=LSIL), and 7 anal cancer patients, using the 850K Infinium MethylationEPIC BeadChip (Illumina). From this analysis, we identified a three-gene methylation classifier that showed strong discriminatory performance in distinguishing HSIL-AIN3 and anal cancer from <=LSIL lesions and successfully identified all anal cancer cases when applied to an independent validation cohort.

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HPV+ group DAP form

https://figshare.com/articles/online_resource/HPV_group_Data_Access_Policy_Form/30374929?file=58801846

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001008433 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00009048405 idat 13.7 MB
EGAF00009048406 idat 13.7 MB
EGAF00009048407 idat 13.7 MB
EGAF00009048408 idat 13.7 MB
EGAF00009048409 idat 13.7 MB
EGAF00009048410 idat 13.7 MB
EGAF00009048411 idat 13.7 MB
EGAF00009048412 idat 13.7 MB
EGAF00009048413 idat 13.7 MB
EGAF00009048414 idat 13.7 MB
EGAF00009048415 idat 13.7 MB
EGAF00009048416 idat 13.7 MB
EGAF00009048417 idat 13.7 MB
EGAF00009048418 idat 13.7 MB
EGAF00009048419 idat 13.7 MB
EGAF00009048420 idat 13.7 MB
EGAF00009048421 idat 13.7 MB
EGAF00009048422 idat 13.7 MB
EGAF00009048423 idat 13.7 MB
EGAF00009048424 idat 13.7 MB
EGAF00009048425 idat 13.7 MB
EGAF00009048426 idat 13.7 MB
EGAF00009048427 idat 13.7 MB
EGAF00009048428 idat 13.7 MB
EGAF00009048429 idat 13.7 MB
EGAF00009048430 idat 13.7 MB
EGAF00009048431 idat 13.7 MB
EGAF00009048432 idat 13.7 MB
EGAF00009048433 idat 13.7 MB
EGAF00009048434 idat 13.7 MB
EGAF00009048435 idat 13.7 MB
EGAF00009048436 idat 13.7 MB
EGAF00009048437 idat 13.7 MB
EGAF00009048438 idat 13.7 MB
EGAF00009048439 idat 13.7 MB
EGAF00009048440 idat 13.7 MB
EGAF00009048441 idat 13.7 MB
EGAF00009048442 idat 13.7 MB
EGAF00009048443 idat 13.7 MB
EGAF00009048444 idat 13.7 MB
EGAF00009048445 idat 13.7 MB
EGAF00009048446 idat 13.7 MB
EGAF00009048447 idat 13.7 MB
EGAF00009048448 idat 13.7 MB
EGAF00009048449 idat 13.7 MB
EGAF00009048450 idat 13.7 MB
EGAF00009048451 idat 13.7 MB
EGAF00009048452 idat 13.7 MB
EGAF00009048453 idat 13.7 MB
EGAF00009048454 idat 13.7 MB
EGAF00009048455 idat 13.7 MB
EGAF00009048456 idat 13.7 MB
EGAF00009048457 idat 13.7 MB
EGAF00009048458 idat 13.7 MB
EGAF00009048459 idat 13.7 MB
EGAF00009048460 idat 13.7 MB
EGAF00009048461 idat 13.7 MB
EGAF00009048462 idat 13.7 MB
EGAF00009048463 idat 13.7 MB
EGAF00009048464 idat 13.7 MB
EGAF00009048465 idat 13.7 MB
EGAF00009048466 idat 13.7 MB
EGAF00009048467 idat 13.7 MB
EGAF00009048468 idat 13.7 MB
EGAF00009048469 idat 13.7 MB
EGAF00009048470 idat 13.7 MB
EGAF00009048471 idat 13.7 MB
EGAF00009048472 idat 13.7 MB
EGAF00009048473 idat 13.7 MB
EGAF00009048474 idat 13.7 MB
EGAF00009048475 idat 13.7 MB
EGAF00009048476 idat 13.7 MB
EGAF00009048477 idat 13.7 MB
EGAF00009048478 idat 13.7 MB
EGAF00009048479 idat 13.7 MB
EGAF00009048480 idat 13.7 MB
EGAF00009048481 idat 13.7 MB
EGAF00009048482 idat 13.7 MB
EGAF00009048483 idat 13.7 MB
EGAF00009048484 idat 13.7 MB
EGAF00009048485 idat 13.7 MB
EGAF00009048486 idat 13.7 MB
EGAF00009048487 idat 13.7 MB
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EGAF00009048489 idat 13.7 MB
EGAF00009048490 idat 13.7 MB
EGAF00009048491 idat 13.7 MB
EGAF00009048492 idat 13.7 MB
EGAF00009048493 idat 13.7 MB
EGAF00009048494 idat 13.7 MB
EGAF00009048495 idat 13.7 MB
EGAF00009048496 idat 13.7 MB
EGAF00009048497 idat 13.7 MB
EGAF00009048498 idat 13.7 MB
EGAF00009048499 idat 13.7 MB
EGAF00009048500 idat 13.7 MB
EGAF00009048501 idat 13.7 MB
EGAF00009048502 idat 13.7 MB
EGAF00009048503 idat 13.7 MB
EGAF00009048504 idat 13.7 MB
EGAF00009048505 idat 13.7 MB
EGAF00009048506 idat 13.7 MB
EGAF00009048507 idat 13.7 MB
EGAF00009048508 idat 13.7 MB
EGAF00009048509 idat 13.7 MB
EGAF00009048510 idat 13.7 MB
EGAF00009048511 idat 13.7 MB
EGAF00009048512 idat 13.7 MB
EGAF00009048513 idat 13.7 MB
EGAF00009048514 idat 13.7 MB
EGAF00009048515 idat 13.7 MB
EGAF00009048516 idat 13.7 MB
EGAF00009048517 idat 13.7 MB
EGAF00009048518 idat 13.7 MB
EGAF00009048519 idat 13.7 MB
EGAF00009048520 idat 13.7 MB
EGAF00009048521 idat 13.7 MB
EGAF00009048522 idat 13.7 MB
EGAF00009048523 idat 13.7 MB
EGAF00009048524 idat 13.7 MB
EGAF00009048525 idat 13.7 MB
EGAF00009048526 idat 13.7 MB
EGAF00009048527 idat 13.7 MB
EGAF00009048528 idat 13.7 MB
EGAF00009048529 idat 13.7 MB
EGAF00009048530 idat 13.7 MB
EGAF00009048531 idat 13.7 MB
EGAF00009048532 idat 13.7 MB
EGAF00009048533 idat 13.7 MB
EGAF00009048534 idat 13.7 MB
EGAF00009048535 idat 13.7 MB
EGAF00009048536 idat 13.7 MB
EGAF00009048537 idat 13.7 MB
EGAF00009048538 idat 13.7 MB
EGAF00009048539 idat 13.7 MB
EGAF00009048540 idat 13.7 MB
EGAF00009048541 idat 13.7 MB
EGAF00009048542 idat 13.7 MB
EGAF00009048543 idat 13.7 MB
EGAF00009048544 idat 13.7 MB
EGAF00009048545 idat 13.7 MB
EGAF00009048546 idat 13.7 MB
EGAF00009048547 idat 13.7 MB
EGAF00009048548 idat 13.7 MB
EGAF00009048549 idat 13.7 MB
EGAF00009048550 idat 13.7 MB
EGAF00009048551 idat 13.7 MB
EGAF00009048552 idat 13.7 MB
EGAF00009048553 idat 13.7 MB
EGAF00009048554 idat 13.7 MB
EGAF00009048555 idat 13.7 MB
EGAF00009048556 idat 13.7 MB
EGAF00009048557 idat 13.7 MB
EGAF00009048558 idat 13.7 MB
EGAF00009048559 idat 13.7 MB
EGAF00009048560 idat 13.7 MB
EGAF00009048561 idat 13.7 MB
EGAF00009048562 idat 13.7 MB
EGAF00009048563 idat 13.7 MB
EGAF00009048564 idat 13.7 MB
EGAF00009048565 idat 13.7 MB
EGAF00009048566 idat 13.7 MB
EGAF00009048567 idat 13.7 MB
EGAF00009048568 idat 13.7 MB
EGAF00009048569 idat 13.7 MB
EGAF00009048570 idat 13.7 MB
EGAF00009048571 idat 13.7 MB
EGAF00009048572 idat 13.7 MB
EGAF00009048573 idat 13.7 MB
EGAF00009048574 idat 13.7 MB
EGAF00009048575 idat 13.7 MB
EGAF00009048576 idat 13.7 MB
172 Files (2.4 GB)