STARR-seq of ERa binding sites in MCF7 and Ishikawa cell lines
A oligo-captured STARR-seq library was generated using as targets ERa binding regions indetified by ChIP-seq in Ishikawa (Endometrial cancer) and T47D (breast cancer) cell lines and, breast cancer primary tissues. STARR-seq assays have been performed in MCF-7 and Ishikawa cell lines. Cells have been cultured for 3 days in hormone deprivated (phenol-red free) media and stimulated for 6 hours by 10nM estradiol (E2) or DMSO (negative control).
- 19/10/2023
- 15 samples
- DAC: EGAC00001003257
- Technology: Illumina NovaSeq 6000
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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000009 | Cancer Genomics |
- added Pubmed ID
- Dataset Released
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
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|---|---|---|---|---|
| EGAF50000046615 | bam | 3.5 GB | Report |
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| EGAF50000046616 | bam | 3.7 GB | Report |
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| EGAF50000046617 | bam | 2.9 GB | Report |
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| EGAF50000046618 | bam | 2.4 GB | Report |
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| EGAF50000046619 | bam | 4.5 GB | Report |
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| EGAF50000046620 | bam | 2.5 GB | Report |
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| EGAF50000046621 | bam | 3.6 GB | Report |
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| EGAF50000046622 | bam | 3.8 GB | Report |
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| EGAF50000046623 | bam | 3.5 GB | Report |
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| EGAF50000046624 | bam | 3.6 GB | Report |
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| EGAF50000046625 | bam | 3.1 GB | Report |
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| EGAF50000046626 | bam | 3.2 GB | Report |
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| EGAF50000046627 | bam | 5.2 GB | Report |
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| EGAF50000046628 | bam | 3.7 GB | Report |
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| EGAF50000046629 | bam | 4.2 GB | Report |
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| 15 Files (53.5 GB) | ||||