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WES and RNA-Seq of HCC biopsies and HCC derived Organoids

We aimed to identify somatic mutations and transcriptional differences that could explain the resistance to Doxorubicin. This dataset includes RNA-Seq of HCC biopsies and Organoids and WES of Organoids.

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Data Access Policy – Basel Liver Biopsy Biobank (University Hospital Basel / University of Basel)

Data Access Policy – Basel Liver Biopsy Biobank (University Hospital Basel / University of Basel) Access is granted only to qualified researchers affiliated with a bona fide research institution, for a clearly described research project, and subject to review and approval by the Data Access Committee "Basel Liver Biopsy Biobank". Application requirements: A completed and signed Data Access Request and Agreement, a brief project description, and the applicant’s CV (and/or relevant track record) must be provided. Permitted use: Data may be used only for the approved research project and for the approved duration. Any new purpose requires a new request and approval. Privacy and confidentiality: Data are pseudonymised. Applicants must not attempt to re-identify individuals and must protect confidentiality at all times. Data security: Data must be handled within an institutional IT environment with appropriate access controls, malware protection, and secure backup procedures. No onward transfer: Data must not be shared or transferred outside the recipient institution or to external collaborators without prior written approval; external collaborators may require a separate agreement. Publication and acknowledgement: Publications and presentations resulting from use of the data must acknowledge the data controllers as specified in the agreement. Incident reporting: Any security breach leading to disclosure must be reported without undue delay and at the latest within 72 hours. Governing law: Switzerland (Basel-City jurisdiction), as specified in the agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000041 Transcriptome Analysis
EGAS50000000042 Transcriptome Analysis
EGAS50000000043 Exome Sequencing
  • I am cleaning up my DACs. I want to transfer all datasets I submitted to DAC EGAC50000000917 Basel Liver Biopsy Biobank.
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000050873 bam 4.3 GB Report
EGAF50000050874 bam 5.2 GB Report
EGAF50000050875 bam 4.0 GB Report
EGAF50000050876 bam 6.1 GB Report
EGAF50000050877 bam 4.1 GB Report
EGAF50000050878 bam 3.0 GB Report
EGAF50000050879 bam 6.7 GB Report
EGAF50000050880 bam 9.2 GB Report
EGAF50000050881 bam 6.6 GB Report
EGAF50000050882 bam 18.9 GB Report
EGAF50000050883 bam 9.6 GB Report
EGAF50000050884 bam 13.4 GB Report
EGAF50000050885 bam 14.3 GB Report
EGAF50000050886 bam 16.0 GB Report
EGAF50000050887 bam 17.4 GB Report
EGAF50000050888 bam 17.6 GB Report
EGAF50000050889 bam 15.8 GB Report
EGAF50000050890 bam 16.1 GB Report
EGAF50000050891 bam 11.3 GB Report
EGAF50000050892 bam 11.1 GB Report
EGAF50000050893 bam 9.7 GB Report
EGAF50000050894 bam 11.4 GB Report
EGAF50000050895 bam 3.6 GB Report
EGAF50000050896 bam 3.7 GB Report
EGAF50000050897 bam 8.4 GB Report
EGAF50000050898 bam 5.4 GB Report
EGAF50000050899 bam 4.8 GB Report
EGAF50000050900 bam 8.1 GB Report
EGAF50000050901 bam 7.0 GB Report
EGAF50000050902 bam 4.2 GB Report
EGAF50000050903 bam 7.7 GB Report
EGAF50000050904 bam 18.1 GB Report
EGAF50000050905 bam 8.6 GB Report
EGAF50000050906 bam 1.7 GB Report
EGAF50000050907 bam 9.3 GB Report
EGAF50000050908 bam 17.8 GB Report
EGAF50000050909 bam 18.2 GB Report
EGAF50000050910 bam 9.5 GB Report
EGAF50000050911 bam 4.7 GB Report
EGAF50000050912 bam 17.1 GB Report
EGAF50000050913 bam 9.6 GB Report
EGAF50000050914 bam 16.7 GB Report
EGAF50000050915 bam 7.8 GB Report
EGAF50000050916 bam 7.8 GB Report
EGAF50000050917 bam 8.4 GB Report
EGAF50000050918 bam 6.0 GB Report
EGAF50000050919 bam 2.3 GB Report
EGAF50000050920 bam 6.9 GB Report
EGAF50000050921 bam 2.7 GB Report
EGAF50000050922 bam 5.6 GB Report
EGAF50000050923 bam 4.1 GB Report
EGAF50000050924 bam 2.7 GB Report
EGAF50000050925 csv 2.1 MB
53 Files (470.6 GB)