WES and RNA-Seq of HCC biopsies and HCC derived Organoids
We aimed to identify somatic mutations and transcriptional differences that could explain the resistance to Doxorubicin. This dataset includes RNA-Seq of HCC biopsies and Organoids and WES of Organoids.
- 19/04/2024
- 52 samples
- DAC: EGAC50000000917
- Technologies: Illumina HiSeq 2500, Illumina NovaSeq 6000, unspecified
- Archive: European Genome-phenome Archive (EGA)
Data Access Policy – Basel Liver Biopsy Biobank (University Hospital Basel / University of Basel)
Data Access Policy – Basel Liver Biopsy Biobank (University Hospital Basel / University of Basel) Access is granted only to qualified researchers affiliated with a bona fide research institution, for a clearly described research project, and subject to review and approval by the Data Access Committee "Basel Liver Biopsy Biobank". Application requirements: A completed and signed Data Access Request and Agreement, a brief project description, and the applicant’s CV (and/or relevant track record) must be provided. Permitted use: Data may be used only for the approved research project and for the approved duration. Any new purpose requires a new request and approval. Privacy and confidentiality: Data are pseudonymised. Applicants must not attempt to re-identify individuals and must protect confidentiality at all times. Data security: Data must be handled within an institutional IT environment with appropriate access controls, malware protection, and secure backup procedures. No onward transfer: Data must not be shared or transferred outside the recipient institution or to external collaborators without prior written approval; external collaborators may require a separate agreement. Publication and acknowledgement: Publications and presentations resulting from use of the data must acknowledge the data controllers as specified in the agreement. Incident reporting: Any security breach leading to disclosure must be reported without undue delay and at the latest within 72 hours. Governing law: Switzerland (Basel-City jurisdiction), as specified in the agreement.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000041 | Transcriptome Analysis | |
| EGAS50000000042 | Transcriptome Analysis | |
| EGAS50000000043 | Exome Sequencing |
- I am cleaning up my DACs. I want to transfer all datasets I submitted to DAC EGAC50000000917 Basel Liver Biopsy Biobank.
- Dataset Released
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF50000050873 | bam | 4.3 GB | Report |
|
| EGAF50000050874 | bam | 5.2 GB | Report |
|
| EGAF50000050875 | bam | 4.0 GB | Report |
|
| EGAF50000050876 | bam | 6.1 GB | Report |
|
| EGAF50000050877 | bam | 4.1 GB | Report |
|
| EGAF50000050878 | bam | 3.0 GB | Report |
|
| EGAF50000050879 | bam | 6.7 GB | Report |
|
| EGAF50000050880 | bam | 9.2 GB | Report |
|
| EGAF50000050881 | bam | 6.6 GB | Report |
|
| EGAF50000050882 | bam | 18.9 GB | Report |
|
| EGAF50000050883 | bam | 9.6 GB | Report |
|
| EGAF50000050884 | bam | 13.4 GB | Report |
|
| EGAF50000050885 | bam | 14.3 GB | Report |
|
| EGAF50000050886 | bam | 16.0 GB | Report |
|
| EGAF50000050887 | bam | 17.4 GB | Report |
|
| EGAF50000050888 | bam | 17.6 GB | Report |
|
| EGAF50000050889 | bam | 15.8 GB | Report |
|
| EGAF50000050890 | bam | 16.1 GB | Report |
|
| EGAF50000050891 | bam | 11.3 GB | Report |
|
| EGAF50000050892 | bam | 11.1 GB | Report |
|
| EGAF50000050893 | bam | 9.7 GB | Report |
|
| EGAF50000050894 | bam | 11.4 GB | Report |
|
| EGAF50000050895 | bam | 3.6 GB | Report |
|
| EGAF50000050896 | bam | 3.7 GB | Report |
|
| EGAF50000050897 | bam | 8.4 GB | Report |
|
| EGAF50000050898 | bam | 5.4 GB | Report |
|
| EGAF50000050899 | bam | 4.8 GB | Report |
|
| EGAF50000050900 | bam | 8.1 GB | Report |
|
| EGAF50000050901 | bam | 7.0 GB | Report |
|
| EGAF50000050902 | bam | 4.2 GB | Report |
|
| EGAF50000050903 | bam | 7.7 GB | Report |
|
| EGAF50000050904 | bam | 18.1 GB | Report |
|
| EGAF50000050905 | bam | 8.6 GB | Report |
|
| EGAF50000050906 | bam | 1.7 GB | Report |
|
| EGAF50000050907 | bam | 9.3 GB | Report |
|
| EGAF50000050908 | bam | 17.8 GB | Report |
|
| EGAF50000050909 | bam | 18.2 GB | Report |
|
| EGAF50000050910 | bam | 9.5 GB | Report |
|
| EGAF50000050911 | bam | 4.7 GB | Report |
|
| EGAF50000050912 | bam | 17.1 GB | Report |
|
| EGAF50000050913 | bam | 9.6 GB | Report |
|
| EGAF50000050914 | bam | 16.7 GB | Report |
|
| EGAF50000050915 | bam | 7.8 GB | Report |
|
| EGAF50000050916 | bam | 7.8 GB | Report |
|
| EGAF50000050917 | bam | 8.4 GB | Report |
|
| EGAF50000050918 | bam | 6.0 GB | Report |
|
| EGAF50000050919 | bam | 2.3 GB | Report |
|
| EGAF50000050920 | bam | 6.9 GB | Report |
|
| EGAF50000050921 | bam | 2.7 GB | Report |
|
| EGAF50000050922 | bam | 5.6 GB | Report |
|
| EGAF50000050923 | bam | 4.1 GB | Report |
|
| EGAF50000050924 | bam | 2.7 GB | Report |
|
| EGAF50000050925 | csv | 2.1 MB |
|
|
| 53 Files (470.6 GB) | ||||
