AVENIO Expanded ctDNA panel sequence alignments (BAMs)
The AVENIO ctDNA Expanded Kit is a next-generation sequencing (NGS) liquid biopsy assay with a 77 gene panel (192 kb) containing genes in U.S. National Comprehensive Cancer Network (NCCN) Guidelines and emerging cancer biomarkers. This pan-cancer assay was applied to 100 plasma samples from patients with lung cancer undergoing treatment in the OSCILLATE trial. After 150 bp paired-end sequencing, reads were aligned to the human genome reference with the AVENIO Oncology Analysis Software. These files are the sorted non-deduplicated alignments generated by the analysis software used for subsequent variant, indel and CNV calling.
- 03/01/2024
- 100 samples
- DAC: EGAC00001003451
- Technology: NextSeq 500
All requests to access data will be assessed by the Peter MacCallum Cancer Centre Data Governance Office. Emails may be directed to dgo@petermac.org.
Please email dgo@petermac.org to obtain the detailed policy regarding data access.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000103 | Cancer Genomics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF50000059689 | bam | 3.3 GB | Report |
|
| EGAF50000059690 | bam | 6.0 GB | Report |
|
| EGAF50000059691 | bam | 4.4 GB | Report |
|
| EGAF50000059692 | bam | 3.4 GB | Report |
|
| EGAF50000059693 | bam | 3.0 GB | Report |
|
| EGAF50000059694 | bam | 4.4 GB | Report |
|
| EGAF50000059695 | bam | 3.3 GB | Report |
|
| EGAF50000059696 | bam | 3.0 GB | Report |
|
| EGAF50000059697 | bam | 3.5 GB | Report |
|
| EGAF50000059698 | bam | 3.5 GB | Report |
|
| EGAF50000059699 | bam | 3.7 GB | Report |
|
| EGAF50000059700 | bam | 3.4 GB | Report |
|
| EGAF50000059701 | bam | 3.1 GB | Report |
|
| EGAF50000059702 | bam | 3.0 GB | Report |
|
| EGAF50000059703 | bam | 5.7 GB | Report |
|
| EGAF50000059704 | bam | 3.6 GB | Report |
|
| EGAF50000059705 | bam | 3.0 GB | Report |
|
| EGAF50000059706 | bam | 3.8 GB | Report |
|
| EGAF50000059707 | bam | 2.8 GB | Report |
|
| EGAF50000059708 | bam | 3.2 GB | Report |
|
| EGAF50000059709 | bam | 3.1 GB | Report |
|
| EGAF50000059710 | bam | 3.5 GB | Report |
|
| EGAF50000059711 | bam | 3.2 GB | Report |
|
| EGAF50000059712 | bam | 3.3 GB | Report |
|
| EGAF50000059713 | bam | 3.8 GB | Report |
|
| EGAF50000059714 | bam | 3.4 GB | Report |
|
| EGAF50000059715 | bam | 3.9 GB | Report |
|
| EGAF50000059716 | bam | 4.1 GB | Report |
|
| EGAF50000059717 | bam | 3.8 GB | Report |
|
| EGAF50000059718 | bam | 3.8 GB | Report |
|
| EGAF50000059719 | bam | 3.7 GB | Report |
|
| EGAF50000059720 | bam | 4.4 GB | Report |
|
| EGAF50000059721 | bam | 3.4 GB | Report |
|
| EGAF50000059722 | bam | 3.9 GB | Report |
|
| EGAF50000059723 | bam | 4.2 GB | Report |
|
| EGAF50000059724 | bam | 4.9 GB | Report |
|
| EGAF50000059725 | bam | 4.5 GB | Report |
|
| EGAF50000059726 | bam | 3.5 GB | Report |
|
| EGAF50000059727 | bam | 5.0 GB | Report |
|
| EGAF50000059728 | bam | 3.3 GB | Report |
|
| EGAF50000059729 | bam | 3.3 GB | Report |
|
| EGAF50000059730 | bam | 4.8 GB | Report |
|
| EGAF50000059731 | bam | 3.1 GB | Report |
|
| EGAF50000059732 | bam | 3.5 GB | Report |
|
| EGAF50000059733 | bam | 4.5 GB | Report |
|
| EGAF50000059734 | bam | 3.9 GB | Report |
|
| EGAF50000059735 | bam | 3.1 GB | Report |
|
| EGAF50000059736 | bam | 5.2 GB | Report |
|
| EGAF50000059737 | bam | 3.7 GB | Report |
|
| EGAF50000059738 | bam | 3.3 GB | Report |
|
| EGAF50000059739 | bam | 3.8 GB | Report |
|
| EGAF50000059740 | bam | 4.4 GB | Report |
|
| EGAF50000059741 | bam | 4.2 GB | Report |
|
| EGAF50000059742 | bam | 5.1 GB | Report |
|
| EGAF50000059743 | bam | 3.9 GB | Report |
|
| EGAF50000059744 | bam | 4.0 GB | Report |
|
| EGAF50000059745 | bam | 4.6 GB | Report |
|
| EGAF50000059746 | bam | 4.1 GB | Report |
|
| EGAF50000059747 | bam | 3.8 GB | Report |
|
| EGAF50000059748 | bam | 3.8 GB | Report |
|
| EGAF50000059749 | bam | 3.5 GB | Report |
|
| EGAF50000059750 | bam | 3.3 GB | Report |
|
| EGAF50000059751 | bam | 5.2 GB | Report |
|
| EGAF50000059752 | bam | 3.7 GB | Report |
|
| EGAF50000059753 | bam | 4.7 GB | Report |
|
| EGAF50000059754 | bam | 5.0 GB | Report |
|
| EGAF50000059755 | bam | 4.0 GB | Report |
|
| EGAF50000059756 | bam | 4.5 GB | Report |
|
| EGAF50000059757 | bam | 3.4 GB | Report |
|
| EGAF50000059758 | bam | 3.8 GB | Report |
|
| EGAF50000059759 | bam | 4.6 GB | Report |
|
| EGAF50000059760 | bam | 4.5 GB | Report |
|
| EGAF50000059761 | bam | 3.8 GB | Report |
|
| EGAF50000059762 | bam | 3.6 GB | Report |
|
| EGAF50000059763 | bam | 3.9 GB | Report |
|
| EGAF50000059764 | bam | 3.7 GB | Report |
|
| EGAF50000059765 | bam | 4.1 GB | Report |
|
| EGAF50000059766 | bam | 3.4 GB | Report |
|
| EGAF50000059767 | bam | 3.7 GB | Report |
|
| EGAF50000059768 | bam | 3.4 GB | Report |
|
| EGAF50000059769 | bam | 3.3 GB | Report |
|
| EGAF50000059770 | bam | 4.2 GB | Report |
|
| EGAF50000059771 | bam | 4.5 GB | Report |
|
| EGAF50000059772 | bam | 4.1 GB | Report |
|
| EGAF50000059773 | bam | 3.7 GB | Report |
|
| EGAF50000059774 | bam | 3.7 GB | Report |
|
| EGAF50000059775 | bam | 3.9 GB | Report |
|
| EGAF50000059776 | bam | 3.8 GB | Report |
|
| EGAF50000059777 | bam | 4.3 GB | Report |
|
| EGAF50000059778 | bam | 3.8 GB | Report |
|
| EGAF50000059779 | bam | 4.1 GB | Report |
|
| EGAF50000059780 | bam | 3.9 GB | Report |
|
| EGAF50000059781 | bam | 3.9 GB | Report |
|
| EGAF50000059782 | bam | 4.4 GB | Report |
|
| EGAF50000059783 | bam | 3.6 GB | Report |
|
| EGAF50000059784 | bam | 3.9 GB | Report |
|
| EGAF50000059785 | bam | 4.0 GB | Report |
|
| EGAF50000059786 | bam | 2.7 GB | Report |
|
| EGAF50000059787 | bam | 3.4 GB | Report |
|
| EGAF50000059788 | bam | 3.3 GB | Report |
|
| 100 Files (386.3 GB) | ||||