About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Poland Lodz Voivodeship - WGS

This project used NGS (next generation sequencing), using Illumina NOVASEQ 6000 and Illumina DRAGEN aligner. The dataset includes BAM and BAM.BAI files from Whole Genome Sequencing of 41 samples (20 female, 21 male of Lodz Voivodeship, Poland from POPULOUS collection). Library Construction Protocol: Illumina DNA PCR-Free Prep, Tagmentation. Reference Genome: GRCh37.

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DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

DUO:0000042
version: 2021-02-23

general research use

This data use permission indicates that use is allowed for general research use for any research purpose.

DUO:0000046
version: 2021-02-23

non-commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit use.

Genomic map of Poland policy

Access to data generated by Biobank Lab at the Department of Oncobiology and Epigenetics, University of Lodz is available by application to the data access committee and will be granted to qualified investigators for appropriate use

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000091 Whole Genome Sequencing
  • Changed reference to study in experiments and analyses. Added new informations to the dataset description.
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000060639 bai 9.0 MB
Federated EGA
EGAF50000060640 bai 9.0 MB
Federated EGA
EGAF50000060641 bai 9.0 MB
Federated EGA
EGAF50000060647 bam 70.8 GB
Federated EGA
EGAF50000060648 bam 66.8 GB
Federated EGA
EGAF50000060649 bai 9.0 MB
Federated EGA
EGAF50000060650 bai 9.1 MB
Federated EGA
EGAF50000060651 bai 9.1 MB
Federated EGA
EGAF50000060652 bai 9.2 MB
Federated EGA
EGAF50000060653 bam 62.0 GB
Federated EGA
EGAF50000060654 bai 9.4 MB
Federated EGA
EGAF50000060655 bai 9.1 MB
Federated EGA
EGAF50000060656 bai 9.2 MB
Federated EGA
EGAF50000060658 bam 59.9 GB
Federated EGA
EGAF50000060659 bai 9.0 MB
Federated EGA
EGAF50000060660 bai 9.1 MB
Federated EGA
EGAF50000060661 bam 73.2 GB
Federated EGA
EGAF50000060662 bai 9.0 MB
Federated EGA
EGAF50000060663 bam 77.0 GB
Federated EGA
EGAF50000060664 bai 9.2 MB
Federated EGA
EGAF50000060665 bam 98.4 GB
Federated EGA
EGAF50000060666 bam 87.1 GB
Federated EGA
EGAF50000060667 bam 92.9 GB
Federated EGA
EGAF50000060668 bai 9.5 MB
Federated EGA
EGAF50000060669 bai 9.6 MB
Federated EGA
EGAF50000060670 bai 9.1 MB
Federated EGA
EGAF50000060671 bai 9.1 MB
Federated EGA
EGAF50000060672 bam 72.4 GB
Federated EGA
EGAF50000060673 bam 58.6 GB
Federated EGA
EGAF50000060674 bai 9.1 MB
Federated EGA
EGAF50000060675 bai 9.3 MB
Federated EGA
EGAF50000060676 bam 85.7 GB
Federated EGA
EGAF50000060677 bam 126.7 GB
Federated EGA
EGAF50000060696 bam 69.9 GB
Federated EGA
EGAF50000060697 bai 9.1 MB
Federated EGA
EGAF50000060698 bai 9.1 MB
Federated EGA
EGAF50000060699 bam 60.1 GB
Federated EGA
EGAF50000060700 bai 9.0 MB
Federated EGA
EGAF50000060701 bam 75.6 GB
Federated EGA
EGAF50000060702 bam 92.9 GB
Federated EGA
EGAF50000060703 bai 9.2 MB
Federated EGA
EGAF50000060704 bam 95.8 GB
Federated EGA
EGAF50000060705 bai 9.0 MB
Federated EGA
EGAF50000060706 bam 70.8 GB
Federated EGA
EGAF50000060707 bam 65.5 GB
Federated EGA
EGAF50000060708 bai 9.0 MB
Federated EGA
EGAF50000060709 bai 9.2 MB
Federated EGA
EGAF50000060710 bai 9.2 MB
Federated EGA
EGAF50000060711 bam 77.1 GB
Federated EGA
EGAF50000060712 bai 9.1 MB
Federated EGA
EGAF50000060713 bai 9.1 MB
Federated EGA
EGAF50000060714 bam 169.5 GB
Federated EGA
EGAF50000060715 bam 72.8 GB
Federated EGA
EGAF50000060716 bai 8.9 MB
Federated EGA
EGAF50000060717 bai 9.0 MB
Federated EGA
EGAF50000060718 bam 61.7 GB
Federated EGA
EGAF50000060719 bam 53.8 GB
Federated EGA
EGAF50000060720 bai 9.0 MB
Federated EGA
EGAF50000060721 bam 128.4 GB
Federated EGA
EGAF50000060722 bam 193.0 GB
Federated EGA
EGAF50000060723 bam 65.5 GB
Federated EGA
EGAF50000060724 bam 97.4 GB
Federated EGA
EGAF50000060725 bam 115.8 GB
Federated EGA
EGAF50000060726 bam 85.7 GB
Federated EGA
EGAF50000060727 bam 48.8 GB
Federated EGA
EGAF50000060728 bam 66.7 GB
Federated EGA
EGAF50000060729 bam 60.7 GB
Federated EGA
EGAF50000060863 bai 9.0 MB
Federated EGA
EGAF50000060865 bai 9.0 MB
Federated EGA
EGAF50000060866 bai 9.0 MB
Federated EGA
EGAF50000060867 bai 9.0 MB
Federated EGA
EGAF50000060868 bai 9.8 MB
Federated EGA
EGAF50000060869 bai 9.1 MB
Federated EGA
EGAF50000060870 bai 9.9 MB
Federated EGA
EGAF50000060871 bai 8.9 MB
Federated EGA
EGAF50000060875 bam 61.0 GB
Federated EGA
EGAF50000060876 bam 65.9 GB
Federated EGA
EGAF50000060878 bam 78.0 GB
Federated EGA
EGAF50000060880 bam 52.1 GB
Federated EGA
EGAF50000060885 bam 102.5 GB
Federated EGA
EGAF50000060888 bam 158.9 GB
Federated EGA
EGAF50000060893 bam 168.5 GB
Federated EGA
82 Files (3.5 TB)