Dataset for Fragle Software Development and Evaluation
Fragle is a deep learning based two stage model that quantifies ctDNA from blood plasma derived cfDNA bam files. Fragle was developed using some previously published datasets and some newly generated data. Fragle was evaluated using some validation cohorts and some unseen cohorts. Some of these cohorts are newly created consisting of total 365 low pass (2-3X) whole genome sequencing bam files mapped to hg19/GRCh37. This dataset contains these newly generated bam files.
- 05/02/2024
- 365 samples
- DAC: EGAC00001001733
- Technology: Illumina NovaSeq 6000
Plasma cfDNA DNA samples from healthy people and cancer patients
Please contact Anders Jacobsen Skanderup for data access
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000122 | Cancer Genomics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF50000060895 | bam | 4.7 MB | ||
| EGAF50000060896 | bam | 4.5 GB | ||
| EGAF50000060897 | bam | 4.7 GB | ||
| EGAF50000060898 | bam | 4.5 GB | ||
| EGAF50000060899 | bam | 4.5 GB | ||
| EGAF50000060900 | bam | 4.6 GB | ||
| EGAF50000060901 | bam | 4.6 GB | ||
| EGAF50000060902 | bam | 4.5 GB | ||
| EGAF50000060903 | bam | 4.5 GB | ||
| EGAF50000060904 | bam | 4.4 GB | ||
| EGAF50000060905 | bam | 4.5 GB | ||
| EGAF50000060906 | bam | 4.5 GB | ||
| EGAF50000060907 | bam | 4.5 GB | ||
| EGAF50000060908 | bam | 4.4 GB | ||
| EGAF50000060909 | bam | 2.7 GB | ||
| EGAF50000060910 | bam | 4.6 GB | ||
| EGAF50000060911 | bam | 3.7 GB | ||
| EGAF50000060912 | bam | 4.5 GB | ||
| EGAF50000060913 | bam | 4.5 GB | ||
| EGAF50000060914 | bam | 4.6 GB | ||
| EGAF50000060915 | bam | 4.4 GB | ||
| EGAF50000060916 | bam | 4.5 GB | ||
| EGAF50000060917 | bam | 4.5 GB | ||
| EGAF50000060918 | bam | 4.5 GB | ||
| EGAF50000060919 | bam | 4.4 GB | ||
| EGAF50000060920 | bam | 4.5 GB | ||
| EGAF50000060921 | bam | 4.4 GB | ||
| EGAF50000060922 | bam | 4.5 GB | ||
| EGAF50000060923 | bam | 4.2 GB | ||
| EGAF50000060924 | bam | 4.5 GB | ||
| EGAF50000060925 | bam | 4.5 GB | ||
| EGAF50000060926 | bam | 4.4 GB | ||
| EGAF50000060927 | bam | 4.5 GB | ||
| EGAF50000060928 | bam | 4.0 GB | ||
| EGAF50000060929 | bam | 4.5 GB | ||
| EGAF50000060930 | bam | 4.4 GB | ||
| EGAF50000060931 | bam | 4.5 GB | ||
| EGAF50000060932 | bam | 4.5 GB | ||
| EGAF50000060933 | bam | 4.5 GB | ||
| EGAF50000060934 | bam | 4.5 GB | ||
| EGAF50000060935 | bam | 4.4 GB | ||
| EGAF50000060936 | bam | 4.5 GB | ||
| EGAF50000060937 | bam | 4.6 GB | ||
| EGAF50000060938 | bam | 4.5 GB | ||
| EGAF50000060939 | bam | 4.3 GB | ||
| EGAF50000060940 | bam | 2.6 GB | ||
| EGAF50000060941 | bam | 4.5 GB | ||
| EGAF50000060942 | bam | 4.5 GB | ||
| EGAF50000060943 | bam | 4.5 GB | ||
| EGAF50000060944 | bam | 4.5 GB | ||
| EGAF50000060945 | bam | 4.4 GB | ||
| EGAF50000060946 | bam | 4.5 GB | ||
| EGAF50000060947 | bam | 4.1 GB | ||
| EGAF50000060948 | bam | 4.6 GB | ||
| EGAF50000060949 | bam | 4.5 GB | ||
| EGAF50000060950 | bam | 4.4 GB | ||
| EGAF50000060951 | bam | 4.5 GB | ||
| EGAF50000060952 | bam | 4.6 GB | ||
| EGAF50000060953 | bam | 4.5 GB | ||
| EGAF50000060954 | bam | 4.6 GB | ||
| EGAF50000060955 | bam | 2.4 GB | ||
| EGAF50000060956 | bam | 3.0 GB | ||
| EGAF50000060957 | bam | 4.5 GB | ||
| EGAF50000060958 | bam | 4.5 GB | ||
| EGAF50000060959 | bam | 4.0 GB | ||
| EGAF50000060960 | bam | 4.6 GB | ||
| EGAF50000060961 | bam | 4.5 GB | ||
| EGAF50000060962 | bam | 4.3 GB | ||
| EGAF50000060963 | bam | 4.6 GB | ||
| EGAF50000060964 | bam | 4.5 GB | ||
| EGAF50000060965 | bam | 4.5 GB | ||
| EGAF50000060966 | bam | 4.5 GB | ||
| EGAF50000060967 | bam | 4.5 GB | ||
| EGAF50000060968 | bam | 4.5 GB | ||
| EGAF50000060969 | bam | 3.3 GB | ||
| EGAF50000060970 | bam | 4.5 GB | ||
| EGAF50000060971 | bam | 4.3 GB | ||
| EGAF50000060972 | bam | 4.1 GB | ||
| EGAF50000060973 | bam | 4.5 GB | ||
| EGAF50000060974 | bam | 4.5 GB | ||
| EGAF50000060975 | bam | 4.5 GB | ||
| EGAF50000060976 | bam | 4.2 GB | ||
| EGAF50000060977 | bam | 4.0 GB | ||
| EGAF50000060978 | bam | 4.8 GB | ||
| EGAF50000060979 | bam | 4.6 GB | ||
| EGAF50000060980 | bam | 4.6 GB | ||
| EGAF50000060981 | bam | 4.5 GB | ||
| EGAF50000060982 | bam | 4.5 GB | ||
| EGAF50000060983 | bam | 4.3 GB | ||
| EGAF50000060984 | bam | 4.3 GB | ||
| EGAF50000060985 | bam | 4.5 GB | ||
| EGAF50000060986 | bam | 4.7 GB | ||
| EGAF50000060987 | bam | 4.6 GB | ||
| EGAF50000060988 | bam | 4.4 GB | ||
| EGAF50000060989 | bam | 4.4 GB | ||
| EGAF50000060990 | bam | 4.4 GB | ||
| EGAF50000060991 | bam | 4.2 GB | ||
| EGAF50000060992 | bam | 4.5 GB | ||
| EGAF50000060993 | bam | 4.5 GB | ||
| EGAF50000060994 | bam | 3.8 GB | ||
| EGAF50000060995 | bam | 4.0 GB | ||
| EGAF50000060996 | bam | 4.1 GB | ||
| EGAF50000060997 | bam | 4.1 GB | ||
| EGAF50000060998 | bam | 3.5 GB | ||
| EGAF50000060999 | bam | 4.0 GB | ||
| EGAF50000061000 | bam | 3.7 GB | ||
| EGAF50000061001 | bam | 4.5 GB | ||
| EGAF50000061002 | bam | 3.8 GB | ||
| EGAF50000061003 | bam | 4.8 GB | ||
| EGAF50000061004 | bam | 4.1 GB | ||
| EGAF50000061005 | bam | 2.6 GB | ||
| EGAF50000061006 | bam | 3.7 GB | ||
| EGAF50000061007 | bam | 4.1 GB | ||
| EGAF50000061008 | bam | 4.1 GB | ||
| EGAF50000061009 | bam | 4.5 GB | ||
| EGAF50000061010 | bam | 3.1 GB | ||
| EGAF50000061011 | bam | 3.6 GB | ||
| EGAF50000061012 | bam | 4.6 GB | ||
| EGAF50000061013 | bam | 4.1 GB | ||
| EGAF50000061014 | bam | 3.5 GB | ||
| EGAF50000061015 | bam | 4.4 GB | ||
| EGAF50000061016 | bam | 4.6 GB | ||
| EGAF50000061017 | bam | 3.4 GB | ||
| EGAF50000061018 | bam | 4.8 GB | ||
| EGAF50000061019 | bam | 4.6 GB | ||
| EGAF50000061020 | bam | 4.6 GB | ||
| EGAF50000061021 | bam | 4.6 GB | ||
| EGAF50000061022 | bam | 4.2 GB | ||
| EGAF50000061023 | bam | 4.3 GB | ||
| EGAF50000061024 | bam | 4.5 GB | ||
| EGAF50000061025 | bam | 4.4 GB | ||
| EGAF50000061026 | bam | 4.9 GB | ||
| EGAF50000061027 | bam | 5.2 GB | ||
| EGAF50000061028 | bam | 5.2 GB | ||
| EGAF50000061029 | bam | 4.6 GB | ||
| EGAF50000061030 | bam | 4.8 GB | ||
| EGAF50000061031 | bam | 4.8 GB | ||
| EGAF50000061032 | bam | 4.7 GB | ||
| EGAF50000061033 | bam | 4.8 GB | ||
| EGAF50000061034 | bam | 4.7 GB | ||
| EGAF50000061035 | bam | 4.5 GB | ||
| EGAF50000061036 | bam | 4.9 GB | ||
| EGAF50000061037 | bam | 3.4 GB | ||
| EGAF50000061038 | bam | 4.7 GB | ||
| EGAF50000061039 | bam | 4.7 GB | ||
| EGAF50000061040 | bam | 4.8 GB | ||
| EGAF50000061041 | bam | 4.6 GB | ||
| EGAF50000061042 | bam | 3.4 GB | ||
| EGAF50000061043 | bam | 4.5 GB | ||
| EGAF50000061044 | bam | 4.5 GB | ||
| EGAF50000061045 | bam | 3.7 GB | ||
| EGAF50000061046 | bam | 4.4 GB | ||
| EGAF50000061047 | bam | 4.5 GB | ||
| EGAF50000061048 | bam | 4.5 GB | ||
| EGAF50000061049 | bam | 4.7 GB | ||
| EGAF50000061050 | bam | 4.5 GB | ||
| EGAF50000061051 | bam | 4.2 GB | ||
| EGAF50000061052 | bam | 4.6 GB | ||
| EGAF50000061053 | bam | 4.6 GB | ||
| EGAF50000061054 | bam | 4.7 GB | ||
| EGAF50000061055 | bam | 4.4 GB | ||
| EGAF50000061056 | bam | 4.5 GB | ||
| EGAF50000061057 | bam | 4.6 GB | ||
| EGAF50000061058 | bam | 4.3 GB | ||
| EGAF50000061059 | bam | 4.5 GB | ||
| EGAF50000061060 | bam | 4.3 GB | ||
| EGAF50000061061 | bam | 4.5 GB | ||
| EGAF50000061062 | bam | 2.8 GB | ||
| EGAF50000061063 | bam | 4.7 GB | ||
| EGAF50000061064 | bam | 3.6 GB | ||
| EGAF50000061065 | bam | 4.5 GB | ||
| EGAF50000061066 | bam | 4.5 GB | ||
| EGAF50000061067 | bam | 4.5 GB | ||
| EGAF50000061068 | bam | 4.5 GB | ||
| EGAF50000061069 | bam | 3.6 GB | ||
| EGAF50000061070 | bam | 4.6 GB | ||
| EGAF50000061071 | bam | 4.5 GB | ||
| EGAF50000061072 | bam | 4.4 GB | ||
| EGAF50000061073 | bam | 4.8 GB | ||
| EGAF50000061074 | bam | 4.6 GB | ||
| EGAF50000061075 | bam | 5.0 GB | ||
| EGAF50000061076 | bam | 3.6 GB | ||
| EGAF50000061077 | bam | 2.8 GB | ||
| EGAF50000061078 | bam | 3.5 GB | ||
| EGAF50000061079 | bam | 3.1 GB | ||
| EGAF50000061080 | bam | 3.0 GB | ||
| EGAF50000061081 | bam | 4.4 GB | ||
| EGAF50000061082 | bam | 4.3 GB | ||
| EGAF50000061083 | bam | 4.4 GB | ||
| EGAF50000061084 | bam | 4.5 GB | ||
| EGAF50000061085 | bam | 4.5 GB | ||
| EGAF50000061086 | bam | 4.4 GB | ||
| EGAF50000061087 | bam | 4.4 GB | ||
| EGAF50000061088 | bam | 4.3 GB | ||
| EGAF50000061089 | bam | 4.4 GB | ||
| EGAF50000061090 | bam | 4.4 GB | ||
| EGAF50000061091 | bam | 4.8 GB | ||
| EGAF50000061092 | bam | 4.0 GB | ||
| EGAF50000061093 | bam | 4.8 GB | ||
| EGAF50000061094 | bam | 4.5 GB | ||
| EGAF50000061095 | bam | 4.2 GB | ||
| EGAF50000061096 | bam | 4.6 GB | ||
| EGAF50000061097 | bam | 4.7 GB | ||
| EGAF50000061098 | bam | 4.7 GB | ||
| EGAF50000061099 | bam | 4.4 GB | ||
| EGAF50000061100 | bam | 4.8 GB | ||
| EGAF50000061101 | bam | 4.6 GB | ||
| EGAF50000061102 | bam | 4.8 GB | ||
| EGAF50000061103 | bam | 3.5 GB | ||
| EGAF50000061104 | bam | 4.1 GB | ||
| EGAF50000061105 | bam | 4.2 GB | ||
| EGAF50000061106 | bam | 2.7 GB | ||
| EGAF50000061107 | bam | 4.7 GB | ||
| EGAF50000061108 | bam | 4.7 GB | ||
| EGAF50000061109 | bam | 4.8 GB | ||
| EGAF50000061110 | bam | 4.6 GB | ||
| EGAF50000061111 | bam | 4.3 GB | ||
| EGAF50000061112 | bam | 3.2 GB | ||
| EGAF50000061113 | bam | 4.7 GB | ||
| EGAF50000061114 | bam | 3.1 GB | ||
| EGAF50000061115 | bam | 3.6 GB | ||
| EGAF50000061116 | bam | 4.3 GB | ||
| EGAF50000061117 | bam | 4.6 GB | ||
| EGAF50000061118 | bam | 4.7 GB | ||
| EGAF50000061119 | bam | 6.1 GB | ||
| EGAF50000061120 | bam | 3.9 GB | ||
| EGAF50000061121 | bam | 3.4 GB | ||
| EGAF50000061122 | bam | 3.5 GB | ||
| EGAF50000061123 | bam | 4.5 GB | ||
| EGAF50000061124 | bam | 3.7 GB | ||
| EGAF50000061125 | bam | 3.5 GB | ||
| EGAF50000061126 | bam | 3.5 GB | ||
| EGAF50000061127 | bam | 3.8 GB | ||
| EGAF50000061128 | bam | 3.1 GB | ||
| EGAF50000061129 | bam | 4.7 GB | ||
| EGAF50000061130 | bam | 3.4 GB | ||
| EGAF50000061131 | bam | 5.8 GB | ||
| EGAF50000061132 | bam | 4.5 GB | ||
| EGAF50000061133 | bam | 3.5 GB | ||
| EGAF50000061134 | bam | 3.5 GB | ||
| EGAF50000061135 | bam | 4.3 GB | ||
| EGAF50000061136 | bam | 3.9 GB | ||
| EGAF50000061137 | bam | 3.4 GB | ||
| EGAF50000061138 | bam | 4.6 GB | ||
| EGAF50000061139 | bam | 3.4 GB | ||
| EGAF50000061140 | bam | 3.7 GB | ||
| EGAF50000061141 | bam | 5.9 GB | ||
| EGAF50000061142 | bam | 4.4 GB | ||
| EGAF50000061143 | bam | 3.3 GB | ||
| EGAF50000061144 | bam | 3.4 GB | ||
| EGAF50000061145 | bam | 4.0 GB | ||
| EGAF50000061146 | bam | 3.4 GB | ||
| EGAF50000061147 | bam | 4.4 GB | ||
| EGAF50000061148 | bam | 3.4 GB | ||
| EGAF50000061149 | bam | 3.4 GB | ||
| EGAF50000061150 | bam | 5.8 GB | ||
| EGAF50000061151 | bam | 3.6 GB | ||
| EGAF50000061152 | bam | 4.8 GB | ||
| EGAF50000061153 | bam | 3.5 GB | ||
| EGAF50000061154 | bam | 3.5 GB | ||
| EGAF50000061155 | bam | 3.6 GB | ||
| EGAF50000061156 | bam | 3.8 GB | ||
| EGAF50000061157 | bam | 5.1 GB | ||
| EGAF50000061158 | bam | 3.4 GB | ||
| EGAF50000061159 | bam | 5.9 GB | ||
| EGAF50000061160 | bam | 3.3 GB | ||
| EGAF50000061161 | bam | 3.3 GB | ||
| EGAF50000061162 | bam | 4.9 GB | ||
| EGAF50000061163 | bam | 4.2 GB | ||
| EGAF50000061164 | bam | 3.5 GB | ||
| EGAF50000061165 | bam | 2.7 GB | ||
| EGAF50000061166 | bam | 2.7 GB | ||
| EGAF50000061167 | bam | 3.3 GB | ||
| EGAF50000061168 | bam | 4.9 GB | ||
| EGAF50000061169 | bam | 5.8 GB | ||
| EGAF50000061170 | bam | 3.9 GB | ||
| EGAF50000061171 | bam | 3.4 GB | ||
| EGAF50000061172 | bam | 3.2 GB | ||
| EGAF50000061173 | bam | 4.4 GB | ||
| EGAF50000061174 | bam | 5.9 GB | ||
| EGAF50000061175 | bam | 5.0 GB | ||
| EGAF50000061176 | bam | 3.4 GB | ||
| EGAF50000061177 | bam | 3.5 GB | ||
| EGAF50000061178 | bam | 2.8 GB | ||
| EGAF50000061179 | bam | 3.3 GB | ||
| EGAF50000061180 | bam | 4.5 GB | ||
| EGAF50000061181 | bam | 3.4 GB | ||
| EGAF50000061182 | bam | 4.8 GB | ||
| EGAF50000061183 | bam | 5.4 GB | ||
| EGAF50000061184 | bam | 3.4 GB | ||
| EGAF50000061185 | bam | 3.4 GB | ||
| EGAF50000061186 | bam | 5.3 GB | ||
| EGAF50000061187 | bam | 4.8 GB | ||
| EGAF50000061188 | bam | 4.8 GB | ||
| EGAF50000061189 | bam | 3.4 GB | ||
| EGAF50000061190 | bam | 3.4 GB | ||
| EGAF50000061191 | bam | 6.0 GB | ||
| EGAF50000061192 | bam | 4.8 GB | ||
| EGAF50000061193 | bam | 4.7 GB | ||
| EGAF50000061194 | bam | 3.4 GB | ||
| EGAF50000061195 | bam | 5.0 GB | ||
| EGAF50000061196 | bam | 3.6 GB | ||
| EGAF50000061197 | bam | 4.8 GB | ||
| EGAF50000061198 | bam | 4.1 GB | ||
| EGAF50000061199 | bam | 6.0 GB | ||
| EGAF50000061200 | bam | 4.7 GB | ||
| EGAF50000061201 | bam | 3.4 GB | ||
| EGAF50000061202 | bam | 4.7 GB | ||
| EGAF50000061203 | bam | 3.5 GB | ||
| EGAF50000061204 | bam | 4.0 GB | ||
| EGAF50000061205 | bam | 3.4 GB | ||
| EGAF50000061206 | bam | 6.2 GB | ||
| EGAF50000061207 | bam | 4.3 GB | ||
| EGAF50000061208 | bam | 3.6 GB | ||
| EGAF50000061209 | bam | 3.4 GB | ||
| EGAF50000061210 | bam | 4.7 GB | ||
| EGAF50000061211 | bam | 4.3 GB | ||
| EGAF50000061212 | bam | 5.7 GB | ||
| EGAF50000061213 | bam | 3.4 GB | ||
| EGAF50000061214 | bam | 3.4 GB | ||
| EGAF50000061215 | bam | 4.7 GB | ||
| EGAF50000061216 | bam | 4.5 GB | ||
| EGAF50000061217 | bam | 3.3 GB | ||
| EGAF50000061218 | bam | 4.8 GB | ||
| EGAF50000061219 | bam | 4.8 GB | ||
| EGAF50000061220 | bam | 3.8 GB | ||
| EGAF50000061221 | bam | 3.2 GB | ||
| EGAF50000061222 | bam | 4.1 GB | ||
| EGAF50000061223 | bam | 3.5 GB | ||
| EGAF50000061224 | bam | 4.4 GB | ||
| EGAF50000061225 | bam | 4.8 GB | ||
| EGAF50000061226 | bam | 3.9 GB | ||
| EGAF50000061227 | bam | 3.3 GB | ||
| EGAF50000061228 | bam | 3.3 GB | ||
| EGAF50000061229 | bam | 4.2 GB | ||
| EGAF50000061230 | bam | 3.5 GB | ||
| EGAF50000061231 | bam | 4.6 GB | ||
| EGAF50000061232 | bam | 3.5 GB | ||
| EGAF50000061233 | bam | 3.4 GB | ||
| EGAF50000061234 | bam | 3.9 GB | ||
| EGAF50000061235 | bam | 2.4 GB | ||
| EGAF50000061236 | bam | 3.4 GB | ||
| EGAF50000061237 | bam | 4.1 GB | ||
| EGAF50000061238 | bam | 2.9 GB | ||
| EGAF50000061239 | bam | 4.7 GB | ||
| EGAF50000061240 | bam | 3.3 GB | ||
| EGAF50000061241 | bam | 2.6 GB | ||
| EGAF50000061242 | bam | 3.0 GB | ||
| EGAF50000061243 | bam | 4.3 GB | ||
| EGAF50000061244 | bam | 3.5 GB | ||
| EGAF50000061245 | bam | 4.7 GB | ||
| EGAF50000061246 | bam | 4.7 GB | ||
| EGAF50000061247 | bam | 5.0 GB | ||
| EGAF50000061248 | bam | 3.1 GB | ||
| EGAF50000061249 | bam | 4.1 GB | ||
| EGAF50000061250 | bam | 4.3 GB | ||
| EGAF50000061251 | bam | 3.8 GB | ||
| EGAF50000061252 | bam | 4.5 GB | ||
| EGAF50000061253 | bam | 3.8 GB | ||
| EGAF50000061254 | bam | 3.2 GB | ||
| EGAF50000061255 | bam | 3.8 GB | ||
| EGAF50000061256 | bam | 3.9 GB | ||
| EGAF50000061257 | bam | 4.0 GB | ||
| EGAF50000061258 | bam | 4.2 GB | ||
| EGAF50000061259 | bam | 4.1 GB | ||
| EGAF50000061260 | csv | 9.6 kB | ||
| 366 Files (1.5 TB) | ||||