Dataset for Fragle Software Development and Evaluation

Fragle is a deep learning based two stage model that quantifies ctDNA from blood plasma derived cfDNA bam files. Fragle was developed using some previously published datasets and some newly generated data. Fragle was evaluated using some validation cohorts and some unseen cohorts. Some of these cohorts are newly created consisting of total 365 low pass (2-3X) whole genome sequencing bam files mapped to hg19/GRCh37. This dataset contains these newly generated bam files.

05/02/2024
365 samples
DAC: EGAC00001001733
Technology: Illumina NovaSeq 6000

Access Policy1 Study 366 Files (1.5 TB)

Metadata

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Plasma cfDNA DNA samples from healthy people and cancer patients

Please contact Anders Jacobsen Skanderup for data access

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS50000000122	ctDNA Quantification in Blood Plasma Using Deep Learning Based Fragle Tool	Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size
EGAF50000060895	bam	4.7 MB
EGAF50000060896	bam	4.5 GB
EGAF50000060897	bam	4.7 GB
EGAF50000060898	bam	4.5 GB
EGAF50000060899	bam	4.5 GB
EGAF50000060900	bam	4.6 GB
EGAF50000060901	bam	4.6 GB
EGAF50000060902	bam	4.5 GB
EGAF50000060903	bam	4.5 GB
EGAF50000060904	bam	4.4 GB
EGAF50000060905	bam	4.5 GB
EGAF50000060906	bam	4.5 GB
EGAF50000060907	bam	4.5 GB
EGAF50000060908	bam	4.4 GB
EGAF50000060909	bam	2.7 GB
EGAF50000060910	bam	4.6 GB
EGAF50000060911	bam	3.7 GB
EGAF50000060912	bam	4.5 GB
EGAF50000060913	bam	4.5 GB
EGAF50000060914	bam	4.6 GB
EGAF50000060915	bam	4.4 GB
EGAF50000060916	bam	4.5 GB
EGAF50000060917	bam	4.5 GB
EGAF50000060918	bam	4.5 GB
EGAF50000060919	bam	4.4 GB
EGAF50000060920	bam	4.5 GB
EGAF50000060921	bam	4.4 GB
EGAF50000060922	bam	4.5 GB
EGAF50000060923	bam	4.2 GB
EGAF50000060924	bam	4.5 GB
EGAF50000060925	bam	4.5 GB
EGAF50000060926	bam	4.4 GB
EGAF50000060927	bam	4.5 GB
EGAF50000060928	bam	4.0 GB
EGAF50000060929	bam	4.5 GB
EGAF50000060930	bam	4.4 GB
EGAF50000060931	bam	4.5 GB
EGAF50000060932	bam	4.5 GB
EGAF50000060933	bam	4.5 GB
EGAF50000060934	bam	4.5 GB
EGAF50000060935	bam	4.4 GB
EGAF50000060936	bam	4.5 GB
EGAF50000060937	bam	4.6 GB
EGAF50000060938	bam	4.5 GB
EGAF50000060939	bam	4.3 GB
EGAF50000060940	bam	2.6 GB
EGAF50000060941	bam	4.5 GB
EGAF50000060942	bam	4.5 GB
EGAF50000060943	bam	4.5 GB
EGAF50000060944	bam	4.5 GB
EGAF50000060945	bam	4.4 GB
EGAF50000060946	bam	4.5 GB
EGAF50000060947	bam	4.1 GB
EGAF50000060948	bam	4.6 GB
EGAF50000060949	bam	4.5 GB
EGAF50000060950	bam	4.4 GB
EGAF50000060951	bam	4.5 GB
EGAF50000060952	bam	4.6 GB
EGAF50000060953	bam	4.5 GB
EGAF50000060954	bam	4.6 GB
EGAF50000060955	bam	2.4 GB
EGAF50000060956	bam	3.0 GB
EGAF50000060957	bam	4.5 GB
EGAF50000060958	bam	4.5 GB
EGAF50000060959	bam	4.0 GB
EGAF50000060960	bam	4.6 GB
EGAF50000060961	bam	4.5 GB
EGAF50000060962	bam	4.3 GB
EGAF50000060963	bam	4.6 GB
EGAF50000060964	bam	4.5 GB
EGAF50000060965	bam	4.5 GB
EGAF50000060966	bam	4.5 GB
EGAF50000060967	bam	4.5 GB
EGAF50000060968	bam	4.5 GB
EGAF50000060969	bam	3.3 GB
EGAF50000060970	bam	4.5 GB
EGAF50000060971	bam	4.3 GB
EGAF50000060972	bam	4.1 GB
EGAF50000060973	bam	4.5 GB
EGAF50000060974	bam	4.5 GB
EGAF50000060975	bam	4.5 GB
EGAF50000060976	bam	4.2 GB
EGAF50000060977	bam	4.0 GB
EGAF50000060978	bam	4.8 GB
EGAF50000060979	bam	4.6 GB
EGAF50000060980	bam	4.6 GB
EGAF50000060981	bam	4.5 GB
EGAF50000060982	bam	4.5 GB
EGAF50000060983	bam	4.3 GB
EGAF50000060984	bam	4.3 GB
EGAF50000060985	bam	4.5 GB
EGAF50000060986	bam	4.7 GB
EGAF50000060987	bam	4.6 GB
EGAF50000060988	bam	4.4 GB
EGAF50000060989	bam	4.4 GB
EGAF50000060990	bam	4.4 GB
EGAF50000060991	bam	4.2 GB
EGAF50000060992	bam	4.5 GB
EGAF50000060993	bam	4.5 GB
EGAF50000060994	bam	3.8 GB
EGAF50000060995	bam	4.0 GB
EGAF50000060996	bam	4.1 GB
EGAF50000060997	bam	4.1 GB
EGAF50000060998	bam	3.5 GB
EGAF50000060999	bam	4.0 GB
EGAF50000061000	bam	3.7 GB
EGAF50000061001	bam	4.5 GB
EGAF50000061002	bam	3.8 GB
EGAF50000061003	bam	4.8 GB
EGAF50000061004	bam	4.1 GB
EGAF50000061005	bam	2.6 GB
EGAF50000061006	bam	3.7 GB
EGAF50000061007	bam	4.1 GB
EGAF50000061008	bam	4.1 GB
EGAF50000061009	bam	4.5 GB
EGAF50000061010	bam	3.1 GB
EGAF50000061011	bam	3.6 GB
EGAF50000061012	bam	4.6 GB
EGAF50000061013	bam	4.1 GB
EGAF50000061014	bam	3.5 GB
EGAF50000061015	bam	4.4 GB
EGAF50000061016	bam	4.6 GB
EGAF50000061017	bam	3.4 GB
EGAF50000061018	bam	4.8 GB
EGAF50000061019	bam	4.6 GB
EGAF50000061020	bam	4.6 GB
EGAF50000061021	bam	4.6 GB
EGAF50000061022	bam	4.2 GB
EGAF50000061023	bam	4.3 GB
EGAF50000061024	bam	4.5 GB
EGAF50000061025	bam	4.4 GB
EGAF50000061026	bam	4.9 GB
EGAF50000061027	bam	5.2 GB
EGAF50000061028	bam	5.2 GB
EGAF50000061029	bam	4.6 GB
EGAF50000061030	bam	4.8 GB
EGAF50000061031	bam	4.8 GB
EGAF50000061032	bam	4.7 GB
EGAF50000061033	bam	4.8 GB
EGAF50000061034	bam	4.7 GB
EGAF50000061035	bam	4.5 GB
EGAF50000061036	bam	4.9 GB
EGAF50000061037	bam	3.4 GB
EGAF50000061038	bam	4.7 GB
EGAF50000061039	bam	4.7 GB
EGAF50000061040	bam	4.8 GB
EGAF50000061041	bam	4.6 GB
EGAF50000061042	bam	3.4 GB
EGAF50000061043	bam	4.5 GB
EGAF50000061044	bam	4.5 GB
EGAF50000061045	bam	3.7 GB
EGAF50000061046	bam	4.4 GB
EGAF50000061047	bam	4.5 GB
EGAF50000061048	bam	4.5 GB
EGAF50000061049	bam	4.7 GB
EGAF50000061050	bam	4.5 GB
EGAF50000061051	bam	4.2 GB
EGAF50000061052	bam	4.6 GB
EGAF50000061053	bam	4.6 GB
EGAF50000061054	bam	4.7 GB
EGAF50000061055	bam	4.4 GB
EGAF50000061056	bam	4.5 GB
EGAF50000061057	bam	4.6 GB
EGAF50000061058	bam	4.3 GB
EGAF50000061059	bam	4.5 GB
EGAF50000061060	bam	4.3 GB
EGAF50000061061	bam	4.5 GB
EGAF50000061062	bam	2.8 GB
EGAF50000061063	bam	4.7 GB
EGAF50000061064	bam	3.6 GB
EGAF50000061065	bam	4.5 GB
EGAF50000061066	bam	4.5 GB
EGAF50000061067	bam	4.5 GB
EGAF50000061068	bam	4.5 GB
EGAF50000061069	bam	3.6 GB
EGAF50000061070	bam	4.6 GB
EGAF50000061071	bam	4.5 GB
EGAF50000061072	bam	4.4 GB
EGAF50000061073	bam	4.8 GB
EGAF50000061074	bam	4.6 GB
EGAF50000061075	bam	5.0 GB
EGAF50000061076	bam	3.6 GB
EGAF50000061077	bam	2.8 GB
EGAF50000061078	bam	3.5 GB
EGAF50000061079	bam	3.1 GB
EGAF50000061080	bam	3.0 GB
EGAF50000061081	bam	4.4 GB
EGAF50000061082	bam	4.3 GB
EGAF50000061083	bam	4.4 GB
EGAF50000061084	bam	4.5 GB
EGAF50000061085	bam	4.5 GB
EGAF50000061086	bam	4.4 GB
EGAF50000061087	bam	4.4 GB
EGAF50000061088	bam	4.3 GB
EGAF50000061089	bam	4.4 GB
EGAF50000061090	bam	4.4 GB
EGAF50000061091	bam	4.8 GB
EGAF50000061092	bam	4.0 GB
EGAF50000061093	bam	4.8 GB
EGAF50000061094	bam	4.5 GB
EGAF50000061095	bam	4.2 GB
EGAF50000061096	bam	4.6 GB
EGAF50000061097	bam	4.7 GB
EGAF50000061098	bam	4.7 GB
EGAF50000061099	bam	4.4 GB
EGAF50000061100	bam	4.8 GB
EGAF50000061101	bam	4.6 GB
EGAF50000061102	bam	4.8 GB
EGAF50000061103	bam	3.5 GB
EGAF50000061104	bam	4.1 GB
EGAF50000061105	bam	4.2 GB
EGAF50000061106	bam	2.7 GB
EGAF50000061107	bam	4.7 GB
EGAF50000061108	bam	4.7 GB
EGAF50000061109	bam	4.8 GB
EGAF50000061110	bam	4.6 GB
EGAF50000061111	bam	4.3 GB
EGAF50000061112	bam	3.2 GB
EGAF50000061113	bam	4.7 GB
EGAF50000061114	bam	3.1 GB
EGAF50000061115	bam	3.6 GB
EGAF50000061116	bam	4.3 GB
EGAF50000061117	bam	4.6 GB
EGAF50000061118	bam	4.7 GB
EGAF50000061119	bam	6.1 GB
EGAF50000061120	bam	3.9 GB
EGAF50000061121	bam	3.4 GB
EGAF50000061122	bam	3.5 GB
EGAF50000061123	bam	4.5 GB
EGAF50000061124	bam	3.7 GB
EGAF50000061125	bam	3.5 GB
EGAF50000061126	bam	3.5 GB
EGAF50000061127	bam	3.8 GB
EGAF50000061128	bam	3.1 GB
EGAF50000061129	bam	4.7 GB
EGAF50000061130	bam	3.4 GB
EGAF50000061131	bam	5.8 GB
EGAF50000061132	bam	4.5 GB
EGAF50000061133	bam	3.5 GB
EGAF50000061134	bam	3.5 GB
EGAF50000061135	bam	4.3 GB
EGAF50000061136	bam	3.9 GB
EGAF50000061137	bam	3.4 GB
EGAF50000061138	bam	4.6 GB
EGAF50000061139	bam	3.4 GB
EGAF50000061140	bam	3.7 GB
EGAF50000061141	bam	5.9 GB
EGAF50000061142	bam	4.4 GB
EGAF50000061143	bam	3.3 GB
EGAF50000061144	bam	3.4 GB
EGAF50000061145	bam	4.0 GB
EGAF50000061146	bam	3.4 GB
EGAF50000061147	bam	4.4 GB
EGAF50000061148	bam	3.4 GB
EGAF50000061149	bam	3.4 GB
EGAF50000061150	bam	5.8 GB
EGAF50000061151	bam	3.6 GB
EGAF50000061152	bam	4.8 GB
EGAF50000061153	bam	3.5 GB
EGAF50000061154	bam	3.5 GB
EGAF50000061155	bam	3.6 GB
EGAF50000061156	bam	3.8 GB
EGAF50000061157	bam	5.1 GB
EGAF50000061158	bam	3.4 GB
EGAF50000061159	bam	5.9 GB
EGAF50000061160	bam	3.3 GB
EGAF50000061161	bam	3.3 GB
EGAF50000061162	bam	4.9 GB
EGAF50000061163	bam	4.2 GB
EGAF50000061164	bam	3.5 GB
EGAF50000061165	bam	2.7 GB
EGAF50000061166	bam	2.7 GB
EGAF50000061167	bam	3.3 GB
EGAF50000061168	bam	4.9 GB
EGAF50000061169	bam	5.8 GB
EGAF50000061170	bam	3.9 GB
EGAF50000061171	bam	3.4 GB
EGAF50000061172	bam	3.2 GB
EGAF50000061173	bam	4.4 GB
EGAF50000061174	bam	5.9 GB
EGAF50000061175	bam	5.0 GB
EGAF50000061176	bam	3.4 GB
EGAF50000061177	bam	3.5 GB
EGAF50000061178	bam	2.8 GB
EGAF50000061179	bam	3.3 GB
EGAF50000061180	bam	4.5 GB
EGAF50000061181	bam	3.4 GB
EGAF50000061182	bam	4.8 GB
EGAF50000061183	bam	5.4 GB
EGAF50000061184	bam	3.4 GB
EGAF50000061185	bam	3.4 GB
EGAF50000061186	bam	5.3 GB
EGAF50000061187	bam	4.8 GB
EGAF50000061188	bam	4.8 GB
EGAF50000061189	bam	3.4 GB
EGAF50000061190	bam	3.4 GB
EGAF50000061191	bam	6.0 GB
EGAF50000061192	bam	4.8 GB
EGAF50000061193	bam	4.7 GB
EGAF50000061194	bam	3.4 GB
EGAF50000061195	bam	5.0 GB
EGAF50000061196	bam	3.6 GB
EGAF50000061197	bam	4.8 GB
EGAF50000061198	bam	4.1 GB
EGAF50000061199	bam	6.0 GB
EGAF50000061200	bam	4.7 GB
EGAF50000061201	bam	3.4 GB
EGAF50000061202	bam	4.7 GB
EGAF50000061203	bam	3.5 GB
EGAF50000061204	bam	4.0 GB
EGAF50000061205	bam	3.4 GB
EGAF50000061206	bam	6.2 GB
EGAF50000061207	bam	4.3 GB
EGAF50000061208	bam	3.6 GB
EGAF50000061209	bam	3.4 GB
EGAF50000061210	bam	4.7 GB
EGAF50000061211	bam	4.3 GB
EGAF50000061212	bam	5.7 GB
EGAF50000061213	bam	3.4 GB
EGAF50000061214	bam	3.4 GB
EGAF50000061215	bam	4.7 GB
EGAF50000061216	bam	4.5 GB
EGAF50000061217	bam	3.3 GB
EGAF50000061218	bam	4.8 GB
EGAF50000061219	bam	4.8 GB
EGAF50000061220	bam	3.8 GB
EGAF50000061221	bam	3.2 GB
EGAF50000061222	bam	4.1 GB
EGAF50000061223	bam	3.5 GB
EGAF50000061224	bam	4.4 GB
EGAF50000061225	bam	4.8 GB
EGAF50000061226	bam	3.9 GB
EGAF50000061227	bam	3.3 GB
EGAF50000061228	bam	3.3 GB
EGAF50000061229	bam	4.2 GB
EGAF50000061230	bam	3.5 GB
EGAF50000061231	bam	4.6 GB
EGAF50000061232	bam	3.5 GB
EGAF50000061233	bam	3.4 GB
EGAF50000061234	bam	3.9 GB
EGAF50000061235	bam	2.4 GB
EGAF50000061236	bam	3.4 GB
EGAF50000061237	bam	4.1 GB
EGAF50000061238	bam	2.9 GB
EGAF50000061239	bam	4.7 GB
EGAF50000061240	bam	3.3 GB
EGAF50000061241	bam	2.6 GB
EGAF50000061242	bam	3.0 GB
EGAF50000061243	bam	4.3 GB
EGAF50000061244	bam	3.5 GB
EGAF50000061245	bam	4.7 GB
EGAF50000061246	bam	4.7 GB
EGAF50000061247	bam	5.0 GB
EGAF50000061248	bam	3.1 GB
EGAF50000061249	bam	4.1 GB
EGAF50000061250	bam	4.3 GB
EGAF50000061251	bam	3.8 GB
EGAF50000061252	bam	4.5 GB
EGAF50000061253	bam	3.8 GB
EGAF50000061254	bam	3.2 GB
EGAF50000061255	bam	3.8 GB
EGAF50000061256	bam	3.9 GB
EGAF50000061257	bam	4.0 GB
EGAF50000061258	bam	4.2 GB
EGAF50000061259	bam	4.1 GB
EGAF50000061260	csv	9.6 kB
366 Files (1.5 TB)