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Analysis of Cell-Free DNA to Predict Outcome to Bevacizumab Combination Therapy in Metastatic Colorectal Cancer Patients

This dataset includes FASTQ files of low coverage whole genome sequencing of normal tissue (n = 8), tumor tissue (n = 55) and cell free DNA from plasma samples (n=101) from patients with metastatic colorectal cancer treated with bevacizumab. A total of 164 samples are present from two different cohorts. The first batch of samples (n = 139, sample names sAPD302T until sAPD502_P0) were collected from the AC-Angiopredict Phase 2 trial (NCT01822444), the second batch of samples (n = 25m, sample names sAPD503_P0 until sAPD527_P0) were collected from the UMM cohort.

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VIB Policy for Data Access and Data Transfer

VIB Policy for Data Access and Data Transfer Applicability This policy applies to the access to and transfer of VIB research datasets that contain non-anonymous Personal Data which are subject to the provisions of the General Data Protection Regulation (EU) 2016/679. Access/transfer conditions - The access/transfer is subject to approval by the VIB Data Access Committee. - The proposed research purpose should not be incompatible with the primary research purpose for which the data were originally generated. - The Recipient shall have in place adequate safeguards for the protection of Personal Data. - Access is subject to a Data Transfer/Access Agreement which will be managed by VIB Innovation & Business. - The Data Transfer/Access will be limited to the Data that are necessary for the proposed research. Access/transfer procedure - Requests to access or obtain non-anonymous datasets should be submitted to the responsible corresponding author that has uploaded the dataset into the repository, and with a copy to dac@vib.be. - The request should contain the following information: o Name, affiliation (legal entity) and contact information of the requesting recipient party. o Reference to the specific dataset(s) for which access or transfer is requested. o Description of the research purpose for which the data will be used. - The VIB Data Access Committee takes decisions to approve access/transfer within 14 days upon receipt of the request. - Data access will be given / Data will be transferred after completion of the Data Transfer/Access Agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000131 Whole Genome Sequencing
  • Pubmed ID has been added
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000061972 fastq.gz 427.7 MB
EGAF50000061973 fastq.gz 265.0 MB
EGAF50000061974 fastq.gz 561.8 MB
EGAF50000061975 fastq.gz 314.3 MB
EGAF50000061976 fastq.gz 405.3 MB
EGAF50000061977 fastq.gz 463.1 MB
EGAF50000061978 fastq.gz 337.3 MB
EGAF50000061979 fastq.gz 394.8 MB
EGAF50000061980 fastq.gz 278.6 MB
EGAF50000061981 fastq.gz 272.6 MB
EGAF50000061982 fastq.gz 385.7 MB
EGAF50000061983 fastq.gz 499.4 MB
EGAF50000061984 fastq.gz 370.7 MB
EGAF50000061985 fastq.gz 352.0 MB
EGAF50000061986 fastq.gz 286.3 MB
EGAF50000061987 fastq.gz 453.7 MB
EGAF50000061988 fastq.gz 471.7 MB
EGAF50000061989 fastq.gz 382.8 MB
EGAF50000061990 fastq.gz 301.6 MB
EGAF50000061991 fastq.gz 268.7 MB
EGAF50000061992 fastq.gz 485.6 MB
EGAF50000061993 fastq.gz 870.2 MB
EGAF50000061994 fastq.gz 551.0 MB
EGAF50000061995 fastq.gz 457.9 MB
EGAF50000061996 fastq.gz 1.4 GB
EGAF50000061997 fastq.gz 537.6 MB
EGAF50000061998 fastq.gz 558.2 MB
EGAF50000061999 fastq.gz 239.2 MB
EGAF50000062000 fastq.gz 365.8 MB
EGAF50000062001 fastq.gz 214.0 MB
EGAF50000062002 fastq.gz 428.8 MB
EGAF50000062003 fastq.gz 574.0 MB
EGAF50000062004 fastq.gz 373.3 MB
EGAF50000062005 fastq.gz 347.6 MB
EGAF50000062006 fastq.gz 138.5 MB
EGAF50000062007 fastq.gz 320.9 MB
EGAF50000062008 fastq.gz 162.1 MB
EGAF50000062009 fastq.gz 472.6 MB
EGAF50000062010 fastq.gz 122.1 MB
EGAF50000062011 fastq.gz 521.1 MB
EGAF50000062012 fastq.gz 276.5 MB
EGAF50000062013 fastq.gz 171.8 MB
EGAF50000062014 fastq.gz 119.4 MB
EGAF50000062015 fastq.gz 199.3 MB
EGAF50000062016 fastq.gz 906.3 MB
EGAF50000062017 fastq.gz 66.0 MB
EGAF50000062018 fastq.gz 624.6 MB
EGAF50000062019 fastq.gz 427.8 MB
EGAF50000062020 fastq.gz 183.1 MB
EGAF50000062021 fastq.gz 448.9 MB
EGAF50000062022 fastq.gz 201.6 MB
EGAF50000062023 fastq.gz 302.7 MB
EGAF50000062024 fastq.gz 201.8 MB
EGAF50000062025 fastq.gz 1.5 GB
EGAF50000062026 fastq.gz 412.2 MB
EGAF50000062027 fastq.gz 49.9 MB
EGAF50000062028 fastq.gz 968.6 MB
EGAF50000062029 fastq.gz 281.4 MB
EGAF50000062030 fastq.gz 270.7 MB
EGAF50000062031 fastq.gz 714.0 MB
EGAF50000062032 fastq.gz 665.3 MB
EGAF50000062033 fastq.gz 409.8 MB
EGAF50000062034 fastq.gz 347.4 MB
EGAF50000062035 fastq.gz 404.5 MB
EGAF50000062036 fastq.gz 363.6 MB
EGAF50000062037 fastq.gz 385.9 MB
EGAF50000062038 fastq.gz 309.1 MB
EGAF50000062039 fastq.gz 438.8 MB
EGAF50000062040 fastq.gz 444.9 MB
EGAF50000062041 fastq.gz 385.8 MB
EGAF50000062042 fastq.gz 369.2 MB
EGAF50000062043 fastq.gz 410.9 MB
EGAF50000062044 fastq.gz 355.4 MB
EGAF50000062045 fastq.gz 415.5 MB
EGAF50000062046 fastq.gz 353.1 MB
EGAF50000062047 fastq.gz 373.2 MB
EGAF50000062048 fastq.gz 361.9 MB
EGAF50000062049 fastq.gz 397.6 MB
EGAF50000062050 fastq.gz 384.6 MB
EGAF50000062051 fastq.gz 435.5 MB
EGAF50000062052 fastq.gz 347.5 MB
EGAF50000062053 fastq.gz 351.6 MB
EGAF50000062054 fastq.gz 336.7 MB
EGAF50000062055 fastq.gz 377.7 MB
EGAF50000062056 fastq.gz 305.8 MB
EGAF50000062057 fastq.gz 301.2 MB
EGAF50000062058 fastq.gz 246.7 MB
EGAF50000062059 fastq.gz 379.4 MB
EGAF50000062060 fastq.gz 312.1 MB
EGAF50000062061 fastq.gz 582.7 MB
EGAF50000062062 fastq.gz 355.1 MB
EGAF50000062063 fastq.gz 408.6 MB
EGAF50000062064 fastq.gz 332.7 MB
EGAF50000062065 fastq.gz 193.5 MB
EGAF50000062066 fastq.gz 325.6 MB
EGAF50000062067 fastq.gz 678.0 MB
EGAF50000062068 fastq.gz 1.1 GB
EGAF50000062069 fastq.gz 349.9 MB
EGAF50000062070 fastq.gz 351.7 MB
EGAF50000062071 fastq.gz 307.4 MB
EGAF50000062072 fastq.gz 646.2 MB
EGAF50000062073 fastq.gz 371.0 MB
EGAF50000062074 fastq.gz 382.5 MB
EGAF50000062075 fastq.gz 362.4 MB
EGAF50000062076 fastq.gz 354.1 MB
EGAF50000062077 fastq.gz 317.8 MB
EGAF50000062078 fastq.gz 362.1 MB
EGAF50000062079 fastq.gz 313.5 MB
EGAF50000062080 fastq.gz 498.5 MB
EGAF50000062081 fastq.gz 438.1 MB
EGAF50000062082 fastq.gz 319.7 MB
EGAF50000062083 fastq.gz 382.5 MB
EGAF50000062084 fastq.gz 379.9 MB
EGAF50000062085 fastq.gz 362.3 MB
EGAF50000062086 fastq.gz 327.3 MB
EGAF50000062087 fastq.gz 452.8 MB
EGAF50000062088 fastq.gz 338.0 MB
EGAF50000062089 fastq.gz 316.8 MB
EGAF50000062090 fastq.gz 386.4 MB
EGAF50000062091 fastq.gz 558.5 MB
EGAF50000062092 fastq.gz 625.0 MB
EGAF50000062093 fastq.gz 367.6 MB
EGAF50000062094 fastq.gz 868.2 MB
EGAF50000062095 fastq.gz 351.9 MB
EGAF50000062096 fastq.gz 525.5 MB
EGAF50000062097 fastq.gz 247.1 MB
EGAF50000062098 fastq.gz 363.8 MB
EGAF50000062099 fastq.gz 587.1 MB
EGAF50000062100 fastq.gz 337.7 MB
EGAF50000062101 fastq.gz 339.0 MB
EGAF50000062102 fastq.gz 346.9 MB
EGAF50000062103 fastq.gz 274.6 MB
EGAF50000062104 fastq.gz 310.8 MB
EGAF50000062105 fastq.gz 308.7 MB
EGAF50000062106 fastq.gz 256.3 MB
EGAF50000062107 fastq.gz 441.7 MB
EGAF50000062108 fastq.gz 364.3 MB
EGAF50000062109 fastq.gz 559.1 MB
EGAF50000062110 fastq.gz 409.1 MB
EGAF50000062111 fastq.gz 556.9 MB
EGAF50000062112 fastq.gz 330.3 MB
EGAF50000062113 fastq.gz 326.1 MB
EGAF50000062114 fastq.gz 404.1 MB
EGAF50000062115 fastq.gz 339.5 MB
EGAF50000062116 fastq.gz 628.4 MB
EGAF50000062117 fastq.gz 590.9 MB
EGAF50000062118 fastq.gz 587.0 MB
EGAF50000062119 fastq.gz 531.0 MB
EGAF50000062120 fastq.gz 377.8 MB
EGAF50000062121 fastq.gz 494.4 MB
EGAF50000062122 fastq.gz 271.7 MB
EGAF50000062123 fastq.gz 477.9 MB
EGAF50000062124 fastq.gz 299.5 MB
EGAF50000062125 fastq.gz 432.1 MB
EGAF50000062126 fastq.gz 343.6 MB
EGAF50000062127 fastq.gz 372.7 MB
EGAF50000062128 fastq.gz 579.2 MB
EGAF50000062129 fastq.gz 621.6 MB
EGAF50000062130 fastq.gz 369.5 MB
EGAF50000062131 fastq.gz 490.7 MB
EGAF50000062132 fastq.gz 614.2 MB
EGAF50000062133 fastq.gz 434.5 MB
EGAF50000062134 fastq.gz 375.0 MB
EGAF50000062135 fastq.gz 345.8 MB
164 Files (67.8 GB)