IBD dataset
We performed multi-omics profiling of 38 Crohn's disease and Ulcerative colitis patients across several stimulations (RPMI, LPS, Salmonella, in total 80 samples). Nuclei were profiled using the 10X Multiome protocol which offers paired RNA+ATAC from the same nucleus (e.g. shared barcodes). Per library, the ATAC (I1, R1, R2, R3 reads) and RNA (I1, I2, R1, R2 reads) are provided. Pools are genetically multiplexed across donors. Genotype files are provided to allow genetic demultiplexing.
- 18/01/2024
- 20 samples
- DAC: EGAC00001003129
- Technology: Illumina NovaSeq 6000
The data can be accessible upon request to Yang Li [yang.li@helmholtz-hzi.de].
The data access policy follow the EGA rules. In addition, a short introduction addressing the reason of requesting data should be sent to Yang Li [yang.li@helmholtz-hzi.de].
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000140 | Transcriptome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF50000063557 | fastq | 6.3 GB | ||
| EGAF50000063558 | fastq | 6.7 GB | ||
| EGAF50000063559 | fastq | 6.9 GB | ||
| EGAF50000063560 | fastq | 8.1 GB | ||
| EGAF50000063561 | fastq | 7.3 GB | ||
| EGAF50000063562 | fastq | 8.0 GB | ||
| EGAF50000063563 | fastq | 8.0 GB | ||
| EGAF50000063564 | fastq | 8.3 GB | ||
| EGAF50000063565 | fastq | 7.5 GB | ||
| EGAF50000063566 | fastq | 9.1 GB | ||
| EGAF50000063567 | fastq | 8.7 GB | ||
| EGAF50000063568 | fastq | 7.8 GB | ||
| EGAF50000063569 | fastq | 8.9 GB | ||
| EGAF50000063570 | fastq | 8.2 GB | ||
| EGAF50000063571 | fastq | 9.4 GB | ||
| EGAF50000063572 | fastq | 7.2 GB | ||
| EGAF50000063573 | fastq | 7.9 GB | ||
| EGAF50000063574 | fastq | 8.8 GB | ||
| EGAF50000063575 | fastq | 9.0 GB | ||
| EGAF50000063576 | fastq | 9.3 GB | ||
| EGAF50000063577 | fastq | 8.2 GB | ||
| EGAF50000063578 | fastq | 8.7 GB | ||
| EGAF50000063579 | fastq | 9.0 GB | ||
| EGAF50000063580 | fastq | 2.6 GB | ||
| EGAF50000063581 | fastq | 2.6 GB | ||
| EGAF50000063582 | fastq | 10.5 GB | ||
| EGAF50000063583 | fastq | 2.5 GB | ||
| EGAF50000063584 | fastq | 9.5 GB | ||
| EGAF50000063585 | fastq | 9.9 GB | ||
| EGAF50000063586 | fastq | 9.6 GB | ||
| EGAF50000063587 | fastq | 10.7 GB | ||
| EGAF50000063588 | fastq | 10.5 GB | ||
| EGAF50000063589 | fastq | 11.3 GB | ||
| EGAF50000063590 | fastq | 10.5 GB | ||
| EGAF50000063591 | fastq | 11.8 GB | ||
| EGAF50000063592 | fastq | 11.3 GB | ||
| EGAF50000063593 | fastq | 2.8 GB | ||
| EGAF50000063594 | fastq | 2.3 GB | ||
| EGAF50000063595 | fastq | 2.3 GB | ||
| EGAF50000063596 | fastq | 10.9 GB | ||
| EGAF50000063597 | fastq | 10.2 GB | ||
| EGAF50000063598 | fastq | 12.2 GB | ||
| EGAF50000063599 | fastq | 2.5 GB | ||
| EGAF50000063600 | fastq | 2.6 GB | ||
| EGAF50000063601 | fastq | 2.7 GB | ||
| EGAF50000063602 | fastq | 2.3 GB | ||
| EGAF50000063603 | fastq | 11.5 GB | ||
| EGAF50000063604 | fastq | 9.4 GB | ||
| EGAF50000063605 | fastq | 2.2 GB | ||
| EGAF50000063606 | fastq | 2.7 GB | ||
| EGAF50000063607 | fastq | 12.0 GB | ||
| EGAF50000063608 | fastq | 2.7 GB | ||
| EGAF50000063609 | fastq | 12.2 GB | ||
| EGAF50000063610 | fastq | 2.0 GB | ||
| EGAF50000063611 | fastq | 2.3 GB | ||
| EGAF50000063612 | fastq | 3.1 GB | ||
| EGAF50000063613 | fastq | 2.3 GB | ||
| EGAF50000063614 | fastq | 2.5 GB | ||
| EGAF50000063615 | fastq | 2.2 GB | ||
| EGAF50000063616 | fastq | 2.8 GB | ||
| EGAF50000063617 | fastq | 15.2 GB | ||
| EGAF50000063618 | fastq | 14.3 GB | ||
| EGAF50000063619 | fastq | 15.7 GB | ||
| EGAF50000063620 | fastq | 10.8 GB | ||
| EGAF50000063621 | fastq | 13.2 GB | ||
| EGAF50000063622 | fastq | 12.9 GB | ||
| EGAF50000063623 | fastq | 13.2 GB | ||
| EGAF50000063624 | fastq | 13.7 GB | ||
| EGAF50000063625 | fastq | 13.4 GB | ||
| EGAF50000063626 | fastq | 14.9 GB | ||
| EGAF50000063627 | fastq | 16.6 GB | ||
| EGAF50000063628 | fastq | 15.3 GB | ||
| EGAF50000063629 | fastq | 15.6 GB | ||
| EGAF50000063630 | fastq | 16.8 GB | ||
| EGAF50000063631 | fastq | 13.7 GB | ||
| EGAF50000063632 | fastq | 12.9 GB | ||
| EGAF50000063633 | fastq | 13.9 GB | ||
| EGAF50000063634 | fastq | 17.1 GB | ||
| EGAF50000063635 | fastq | 16.1 GB | ||
| EGAF50000063636 | fastq | 14.7 GB | ||
| EGAF50000063637 | vcf.gz | 759.4 MB | ||
| EGAF50000063638 | xlsx | 10.8 kB | ||
| 82 Files (711.9 GB) | ||||