RNA sequencing of pretreatment, on-treatment and posttreatment gastric and gastroesophageal junction tumors treated with neoadjuvant anti-PD-L1 plus chemotherapy
This set contains a total of 78 files cram files with RNA sequencing data from 20 patients included in the PANDA study treated with 1 cycle of monotherapy atezolizumab and 4 cycles atezolizumab plus chemotherapy (docetaxel, oxaliplatin and capecitabine). RNA was isolated from fresh frozen material and sequenced at 4 timepoints baseline, after monotherapy atezolizumab, after combination atezolizumab plus chemotherapy and at resection (due to 2 missing samples, there is a total of 78 samples).
- 29/01/2024
- 78 samples
- DAC: EGAC50000000055
- Technology: Illumina NovaSeq 6000
Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy
Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000168 | RNASeq |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF50000080626 | cram | 1.5 GB | ||
| EGAF50000080627 | cram | 1.3 GB | ||
| EGAF50000080628 | cram | 1.7 GB | ||
| EGAF50000080629 | cram | 3.7 GB | ||
| EGAF50000080630 | cram | 952.6 MB | ||
| EGAF50000080631 | cram | 795.0 MB | ||
| EGAF50000080648 | crai | 142.6 kB | ||
| EGAF50000080649 | crai | 106.9 kB | ||
| EGAF50000080650 | cram | 3.1 GB | ||
| EGAF50000080652 | crai | 143.7 kB | ||
| EGAF50000080653 | cram | 2.0 GB | ||
| EGAF50000080654 | crai | 181.6 kB | ||
| EGAF50000080655 | crai | 238.5 kB | ||
| EGAF50000080656 | cram | 1.6 GB | ||
| EGAF50000080657 | crai | 278.2 kB | ||
| EGAF50000080658 | crai | 193.8 kB | ||
| EGAF50000080659 | cram | 1.4 GB | ||
| EGAF50000080660 | crai | 200.1 kB | ||
| EGAF50000080661 | cram | 1.8 GB | ||
| EGAF50000080662 | crai | 129.3 kB | ||
| EGAF50000080663 | crai | 148.6 kB | ||
| EGAF50000080664 | crai | 134.4 kB | ||
| EGAF50000080665 | cram | 1.5 GB | ||
| EGAF50000080666 | crai | 166.9 kB | ||
| EGAF50000080667 | cram | 1.2 GB | ||
| EGAF50000080668 | crai | 121.9 kB | ||
| EGAF50000080669 | cram | 2.1 GB | ||
| EGAF50000080670 | crai | 65.1 kB | ||
| EGAF50000080671 | crai | 130.9 kB | ||
| EGAF50000080672 | cram | 1.8 GB | ||
| EGAF50000080673 | cram | 2.7 GB | ||
| EGAF50000080674 | crai | 253.0 kB | ||
| EGAF50000080675 | crai | 120.9 kB | ||
| EGAF50000080676 | cram | 901.9 MB | ||
| EGAF50000080677 | cram | 1.9 GB | ||
| EGAF50000080678 | crai | 194.0 kB | ||
| EGAF50000080679 | cram | 2.2 GB | ||
| EGAF50000080680 | cram | 2.7 GB | ||
| EGAF50000080681 | cram | 1.8 GB | ||
| EGAF50000080682 | crai | 86.4 kB | ||
| EGAF50000080683 | cram | 1.2 GB | ||
| EGAF50000080684 | crai | 184.4 kB | ||
| EGAF50000080685 | crai | 214.5 kB | ||
| EGAF50000080686 | crai | 173.0 kB | ||
| EGAF50000080687 | cram | 610.6 MB | ||
| EGAF50000080688 | crai | 93.7 kB | ||
| EGAF50000080689 | crai | 172.0 kB | ||
| EGAF50000080690 | cram | 2.0 GB | ||
| EGAF50000080691 | cram | 2.5 GB | ||
| EGAF50000080692 | cram | 1.3 GB | ||
| EGAF50000080693 | crai | 253.5 kB | ||
| EGAF50000080694 | crai | 57.9 kB | ||
| EGAF50000080695 | cram | 942.5 MB | ||
| EGAF50000080696 | cram | 964.6 MB | ||
| EGAF50000080697 | crai | 49.9 kB | ||
| EGAF50000080706 | cram | 550.7 MB | ||
| EGAF50000080707 | cram | 994.6 MB | ||
| EGAF50000080708 | crai | 101.2 kB | ||
| EGAF50000080709 | cram | 2.1 GB | ||
| EGAF50000080710 | crai | 87.8 kB | ||
| EGAF50000080711 | crai | 91.9 kB | ||
| EGAF50000080712 | cram | 2.1 GB | ||
| EGAF50000080713 | crai | 77.4 kB | ||
| EGAF50000080714 | crai | 54.5 kB | ||
| EGAF50000080715 | crai | 195.1 kB | ||
| EGAF50000080716 | cram | 1.4 GB | ||
| EGAF50000080717 | cram | 919.5 MB | ||
| EGAF50000080718 | crai | 200.0 kB | ||
| EGAF50000080719 | cram | 1.4 GB | ||
| EGAF50000080720 | cram | 592.4 MB | ||
| EGAF50000080721 | crai | 131.1 kB | ||
| EGAF50000080722 | crai | 92.2 kB | ||
| EGAF50000080723 | cram | 520.1 MB | ||
| EGAF50000080724 | cram | 799.7 MB | ||
| EGAF50000080740 | cram | 1.5 GB | ||
| EGAF50000080741 | cram | 1.3 GB | ||
| EGAF50000080753 | crai | 96.9 kB | ||
| EGAF50000080754 | cram | 2.5 GB | ||
| EGAF50000080763 | crai | 131.4 kB | ||
| EGAF50000080764 | crai | 234.2 kB | ||
| EGAF50000080765 | cram | 971.1 MB | ||
| EGAF50000080766 | cram | 259.8 MB | ||
| EGAF50000080767 | crai | 144.3 kB | ||
| EGAF50000080768 | cram | 1.6 GB | ||
| EGAF50000080769 | crai | 25.6 kB | ||
| EGAF50000080770 | cram | 2.4 GB | ||
| EGAF50000080771 | crai | 140.2 kB | ||
| EGAF50000080772 | crai | 147.4 kB | ||
| EGAF50000080773 | cram | 2.2 GB | ||
| EGAF50000080774 | crai | 217.9 kB | ||
| EGAF50000080775 | crai | 148.9 kB | ||
| EGAF50000080776 | cram | 1.8 GB | ||
| EGAF50000080777 | cram | 1.2 GB | ||
| EGAF50000080778 | crai | 129.7 kB | ||
| EGAF50000080779 | cram | 1.5 GB | ||
| EGAF50000080780 | crai | 102.6 kB | ||
| EGAF50000080781 | cram | 2.6 GB | ||
| EGAF50000080782 | cram | 1.1 GB | ||
| EGAF50000080783 | crai | 231.5 kB | ||
| EGAF50000080784 | cram | 1.1 GB | ||
| EGAF50000080785 | crai | 112.4 kB | ||
| EGAF50000080786 | cram | 1.5 GB | ||
| EGAF50000080787 | cram | 414.6 MB | ||
| EGAF50000080788 | cram | 758.1 MB | ||
| EGAF50000080789 | crai | 75.3 kB | ||
| EGAF50000080790 | crai | 147.8 kB | ||
| EGAF50000080791 | crai | 97.4 kB | ||
| EGAF50000080792 | cram | 586.5 MB | ||
| EGAF50000080793 | cram | 1.4 GB | ||
| EGAF50000080794 | cram | 1.5 GB | ||
| EGAF50000080795 | cram | 1.2 GB | ||
| EGAF50000080796 | crai | 205.8 kB | ||
| EGAF50000080797 | cram | 1.3 GB | ||
| EGAF50000080798 | crai | 49.1 kB | ||
| EGAF50000080799 | cram | 1.1 GB | ||
| EGAF50000080800 | cram | 1.5 GB | ||
| EGAF50000080801 | cram | 1.5 GB | ||
| EGAF50000080802 | crai | 36.5 kB | ||
| EGAF50000080803 | cram | 3.2 GB | ||
| EGAF50000080804 | crai | 147.5 kB | ||
| EGAF50000080805 | crai | 118.9 kB | ||
| EGAF50000080806 | cram | 2.3 GB | ||
| EGAF50000080807 | cram | 1.2 GB | ||
| EGAF50000080808 | cram | 1.5 GB | ||
| EGAF50000080809 | cram | 1.7 GB | ||
| EGAF50000080810 | crai | 169.4 kB | ||
| EGAF50000080811 | crai | 317.3 kB | ||
| EGAF50000080812 | cram | 1.2 GB | ||
| EGAF50000080813 | crai | 78.8 kB | ||
| EGAF50000080814 | crai | 93.4 kB | ||
| EGAF50000080815 | crai | 112.3 kB | ||
| EGAF50000080816 | crai | 55.4 kB | ||
| EGAF50000080817 | cram | 1.8 GB | ||
| EGAF50000080818 | crai | 294.6 kB | ||
| EGAF50000080819 | crai | 114.3 kB | ||
| EGAF50000080820 | crai | 166.1 kB | ||
| EGAF50000080821 | cram | 1.7 GB | ||
| EGAF50000080822 | crai | 174.8 kB | ||
| EGAF50000080823 | crai | 114.5 kB | ||
| EGAF50000080824 | cram | 463.7 MB | ||
| EGAF50000080825 | crai | 111.2 kB | ||
| EGAF50000080826 | crai | 140.1 kB | ||
| EGAF50000080827 | crai | 230.8 kB | ||
| EGAF50000080837 | crai | 45.9 kB | ||
| EGAF50000080838 | cram | 1.5 GB | ||
| EGAF50000080839 | crai | 150.4 kB | ||
| EGAF50000080840 | cram | 950.9 MB | ||
| EGAF50000080841 | crai | 133.3 kB | ||
| EGAF50000080842 | crai | 157.8 kB | ||
| EGAF50000080843 | cram | 1.2 GB | ||
| EGAF50000080844 | cram | 360.9 MB | ||
| EGAF50000080845 | crai | 163.2 kB | ||
| EGAF50000080846 | crai | 140.1 kB | ||
| EGAF50000080847 | cram | 2.2 GB | ||
| EGAF50000080848 | crai | 140.3 kB | ||
| EGAF50000080849 | cram | 960.3 MB | ||
| 156 Files (116.6 GB) | ||||