Whole exome sequencing of pretreatment gastric and gastroesophageal junction tumors
This set contains 40 bam files with whole exome sequencing data from 20 patients included in the PANDA study treated with 1 cycle of monotherapy atezolizumab and 4 cycles atezolizumab plus chemotherapy (docetaxel, oxaliplatin and capecitabine). Tumor DNA was isolated from tumor samples and germline DNA was isolated from PBMCs, which was used for whole exome sequencing.
- 29/01/2024
- 40 samples
- DAC: EGAC50000000055
- Technology: Illumina NovaSeq 6000
Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy
Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000168 | RNASeq |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF50000080614 | bam | 11.6 GB | ||
| EGAF50000080615 | bam | 10.0 GB | ||
| EGAF50000080616 | bam | 11.9 GB | ||
| EGAF50000080617 | bai | 5.9 MB | ||
| EGAF50000080618 | bam | 9.3 GB | ||
| EGAF50000080619 | bam | 6.1 GB | ||
| EGAF50000080620 | bam | 9.3 GB | ||
| EGAF50000080621 | bam | 10.2 GB | ||
| EGAF50000080622 | bam | 10.9 GB | ||
| EGAF50000080623 | bai | 5.6 MB | ||
| EGAF50000080624 | bam | 5.9 GB | ||
| EGAF50000080625 | bai | 6.0 MB | ||
| EGAF50000080632 | bam | 5.1 GB | ||
| EGAF50000080633 | bai | 5.9 MB | ||
| EGAF50000080634 | bam | 12.2 GB | ||
| EGAF50000080635 | bai | 5.8 MB | ||
| EGAF50000080636 | bai | 6.2 MB | ||
| EGAF50000080637 | bam | 12.5 GB | ||
| EGAF50000080638 | bai | 5.9 MB | ||
| EGAF50000080639 | bai | 6.0 MB | ||
| EGAF50000080640 | bai | 5.7 MB | ||
| EGAF50000080641 | bam | 10.4 GB | ||
| EGAF50000080642 | bai | 5.5 MB | ||
| EGAF50000080643 | bai | 5.6 MB | ||
| EGAF50000080644 | bam | 11.0 GB | ||
| EGAF50000080645 | bai | 5.6 MB | ||
| EGAF50000080646 | bam | 5.7 GB | ||
| EGAF50000080647 | bai | 5.9 MB | ||
| EGAF50000080651 | bam | 11.4 GB | ||
| EGAF50000080698 | bam | 5.9 GB | ||
| EGAF50000080699 | bai | 6.0 MB | ||
| EGAF50000080700 | bai | 5.6 MB | ||
| EGAF50000080701 | bam | 5.6 GB | ||
| EGAF50000080702 | bai | 5.9 MB | ||
| EGAF50000080703 | bam | 10.0 GB | ||
| EGAF50000080704 | bai | 5.9 MB | ||
| EGAF50000080705 | bam | 10.3 GB | ||
| EGAF50000080725 | bam | 5.9 GB | ||
| EGAF50000080726 | bai | 6.1 MB | ||
| EGAF50000080727 | bam | 9.5 GB | ||
| EGAF50000080728 | bai | 5.6 MB | ||
| EGAF50000080729 | bai | 5.6 MB | ||
| EGAF50000080730 | bam | 5.8 GB | ||
| EGAF50000080731 | bai | 6.0 MB | ||
| EGAF50000080732 | bam | 5.4 GB | ||
| EGAF50000080733 | bai | 5.8 MB | ||
| EGAF50000080734 | bam | 6.2 GB | ||
| EGAF50000080735 | bai | 6.0 MB | ||
| EGAF50000080736 | bam | 11.5 GB | ||
| EGAF50000080737 | bam | 10.9 GB | ||
| EGAF50000080738 | bai | 5.5 MB | ||
| EGAF50000080739 | bam | 5.9 GB | ||
| EGAF50000080742 | bai | 5.5 MB | ||
| EGAF50000080743 | bam | 5.5 GB | ||
| EGAF50000080744 | bam | 5.8 GB | ||
| EGAF50000080745 | bai | 6.1 MB | ||
| EGAF50000080746 | bam | 6.7 GB | ||
| EGAF50000080747 | bai | 5.6 MB | ||
| EGAF50000080748 | bai | 5.7 MB | ||
| EGAF50000080749 | bam | 5.9 GB | ||
| EGAF50000080750 | bai | 6.0 MB | ||
| EGAF50000080751 | bam | 5.3 GB | ||
| EGAF50000080752 | bam | 6.3 GB | ||
| EGAF50000080755 | bai | 5.9 MB | ||
| EGAF50000080756 | bam | 10.2 GB | ||
| EGAF50000080757 | bai | 5.6 MB | ||
| EGAF50000080758 | bam | 6.3 GB | ||
| EGAF50000080759 | bai | 5.5 MB | ||
| EGAF50000080760 | bai | 5.9 MB | ||
| EGAF50000080761 | bam | 10.1 GB | ||
| EGAF50000080762 | bai | 5.4 MB | ||
| EGAF50000080828 | bam | 5.7 GB | ||
| EGAF50000080829 | bai | 6.1 MB | ||
| EGAF50000080830 | bai | 5.5 MB | ||
| EGAF50000080831 | bai | 6.0 MB | ||
| EGAF50000080832 | bam | 11.0 GB | ||
| EGAF50000080833 | bai | 5.6 MB | ||
| EGAF50000080834 | bam | 5.3 GB | ||
| EGAF50000080835 | bai | 5.6 MB | ||
| EGAF50000080836 | bai | 6.0 MB | ||
| 80 Files (330.9 GB) | ||||