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SECRETO Oral metagenome

The dataset comprises data for n=329 participants who underwent saliva sampling. Shotgun metagenomic paired-end sequencing was conducted using the Illumina NovaSeq 6000 platform, and the resulting files are in FASTQ format.

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SECRETO Oral study consortia Consortium Data Access Committee

Pseudonymised data and/or biological samples are issued for the purpose of research by the SECRETO Oral study consortia of the University of Helsinki and Helsinki University Hospital. This is based on the Human Genes Research Act (https://www.riigiteataja.ee/en/eli/531102013003/consolide). Access to summary data and individual-level genotype data is available by application to the SECRETO Oral Study Consortium Data Access Committee (CDAC). Access to data will be granted to qualified investigators for appropriate use. The CDAC also controls the individual-level genotype data for the 329 SECRETO Oral samples.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007505 Metagenomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008330891 fq.gz 79.0 MB
EGAF00008330905 fq.gz 43.4 MB
EGAF00008330908 fq.gz 86.7 MB
EGAF00008330911 fq.gz 47.3 MB
EGAF00008330925 fq.gz 50.4 MB
EGAF00008330935 fq.gz 56.5 MB
EGAF00008330947 fq.gz 69.9 MB
EGAF00008330955 fq.gz 80.5 MB
EGAF00008330969 fq.gz 86.2 MB
EGAF00008330983 fq.gz 45.5 MB
EGAF00008330994 fq.gz 41.3 MB
EGAF00008330998 fq.gz 78.2 MB
EGAF00008331001 fq.gz 37.5 MB
EGAF00008331007 fq.gz 41.4 MB
EGAF00008331024 fq.gz 22.0 MB
EGAF00008331025 fq.gz 23.4 MB
EGAF00008331032 fq.gz 27.2 MB
EGAF00008331045 fq.gz 29.8 MB
EGAF00008331050 fq.gz 118.5 MB
EGAF00008331063 fq.gz 82.6 MB
EGAF00008331076 fq.gz 139.9 MB
EGAF00008331079 fq.gz 92.8 MB
EGAF00008331091 fq.gz 84.3 MB
EGAF00008331095 fq.gz 93.9 MB
EGAF00008331105 fq.gz 24.1 MB
EGAF00008331114 fq.gz 25.9 MB
EGAF00008331125 fq.gz 87.3 MB
EGAF00008331132 fq.gz 96.3 MB
EGAF00008331140 fq.gz 25.8 MB
EGAF00008331153 fq.gz 27.9 MB
EGAF00008331154 fq.gz 25.5 MB
EGAF00008331161 fq.gz 27.8 MB
EGAF00008331168 fq.gz 23.9 MB
EGAF00008331184 fq.gz 26.4 MB
EGAF00008331191 fq.gz 16.9 MB
EGAF00008331198 fq.gz 18.0 MB
EGAF00008331211 fq.gz 36.7 MB
EGAF00008331218 fq.gz 39.9 MB
EGAF00008331228 fq.gz 105.2 MB
EGAF00008331234 fq.gz 118.0 MB
EGAF00008331241 fq.gz 17.6 MB
EGAF00008331257 fq.gz 18.8 MB
EGAF00008331263 fq.gz 41.1 MB
EGAF00008331274 fq.gz 44.2 MB
EGAF00008331281 fq.gz 202.9 MB
EGAF00008331293 fq.gz 239.7 MB
EGAF00008331299 fq.gz 22.2 MB
EGAF00008331306 fq.gz 24.0 MB
EGAF00008331318 fq.gz 36.9 MB
EGAF00008331323 fq.gz 41.0 MB
EGAF00008331331 fq.gz 97.4 MB
EGAF00008331343 fq.gz 112.6 MB
EGAF00008331359 fq.gz 14.2 MB
EGAF00008331364 fq.gz 15.1 MB
EGAF00008331370 fq.gz 21.5 MB
EGAF00008331377 fq.gz 23.6 MB
EGAF00008331395 fq.gz 57.4 MB
EGAF00008331408 fq.gz 51.7 MB
EGAF00008331410 fq.gz 63.7 MB
EGAF00008331419 fq.gz 56.0 MB
EGAF00008331423 fq.gz 45.2 MB
EGAF00008331437 fq.gz 29.2 MB
EGAF00008331452 fq.gz 56.0 MB
EGAF00008331464 fq.gz 40.7 MB
EGAF00008331466 fq.gz 32.0 MB
EGAF00008331469 fq.gz 61.6 MB
EGAF00008331477 fq.gz 138.9 MB
EGAF00008331483 fq.gz 159.6 MB
EGAF00008331492 fq.gz 55.1 MB
EGAF00008331503 fq.gz 62.2 MB
EGAF00008331514 fq.gz 19.3 MB
EGAF00008331521 fq.gz 21.0 MB
EGAF00008331535 fq.gz 24.1 MB
EGAF00008331541 fq.gz 26.4 MB
EGAF00008331557 fq.gz 117.0 MB
EGAF00008331565 fq.gz 132.5 MB
EGAF00008331575 fq.gz 18.2 MB
EGAF00008331582 fq.gz 19.7 MB
EGAF00008331590 fq.gz 95.6 MB
EGAF00008331603 fq.gz 109.1 MB
EGAF00008331609 fq.gz 30.1 MB
EGAF00008331620 fq.gz 32.5 MB
EGAF00008331630 fq.gz 90.9 MB
EGAF00008331640 fq.gz 108.3 MB
EGAF00008331981 fq.gz 71.4 MB
EGAF00008331999 fq.gz 20.4 MB
EGAF00008332012 fq.gz 64.5 MB
EGAF00008332015 fq.gz 100.5 MB
EGAF00008332051 fq.gz 81.8 MB
EGAF00008332105 fq.gz 38.6 MB
EGAF00008332137 fq.gz 61.5 MB
EGAF00008332170 fq.gz 33.4 MB
EGAF00008332172 fq.gz 21.6 MB
EGAF00008332188 fq.gz 35.9 MB
EGAF00008332211 fq.gz 64.0 MB
EGAF00008332247 fq.gz 72.0 MB
EGAF00008332255 fq.gz 68.2 MB
EGAF00008332262 fq.gz 15.0 MB
EGAF00008332274 fq.gz 92.4 MB
EGAF00008332292 fq.gz 35.1 MB
EGAF00008332293 fq.gz 16.3 MB
EGAF00008332299 fq.gz 89.3 MB
EGAF00008332309 fq.gz 10.2 MB
EGAF00008332326 fq.gz 10.8 MB
EGAF00008332337 fq.gz 25.5 MB
EGAF00008332347 fq.gz 27.1 MB
EGAF00008332357 fq.gz 73.1 MB
EGAF00008332369 fq.gz 81.4 MB
EGAF00008332378 fq.gz 71.4 MB
EGAF00008332396 fq.gz 49.4 MB
EGAF00008332402 fq.gz 79.1 MB
EGAF00008332407 fq.gz 57.3 MB
EGAF00008332416 fq.gz 47.2 MB
EGAF00008332426 fq.gz 52.1 MB
EGAF00008332436 fq.gz 75.7 MB
EGAF00008332444 fq.gz 85.7 MB
EGAF00008332451 fq.gz 63.8 MB
EGAF00008332459 fq.gz 71.6 MB
EGAF00008332469 fq.gz 24.5 MB
EGAF00008332479 fq.gz 26.3 MB
EGAF00008332488 fq.gz 9.4 MB
EGAF00008332495 fq.gz 10.1 MB
EGAF00008332506 fq.gz 22.0 MB
EGAF00008332519 fq.gz 24.4 MB
EGAF00008332523 fq.gz 64.6 MB
EGAF00008332537 fq.gz 74.2 MB
EGAF00008332545 fq.gz 34.9 MB
EGAF00008332554 fq.gz 38.9 MB
EGAF00008332564 fq.gz 74.8 MB
EGAF00008332573 fq.gz 84.8 MB
EGAF00008332582 fq.gz 47.0 MB
EGAF00008332589 fq.gz 52.5 MB
EGAF00008332600 fq.gz 23.2 MB
EGAF00008332611 fq.gz 25.1 MB
EGAF00008332619 fq.gz 19.3 MB
EGAF00008332629 fq.gz 21.0 MB
EGAF00008332637 fq.gz 62.5 MB
EGAF00008332647 fq.gz 70.0 MB
EGAF00008332655 fq.gz 32.4 MB
EGAF00008332665 fq.gz 35.6 MB
EGAF00008332672 fq.gz 13.0 MB
EGAF00008332681 fq.gz 13.7 MB
EGAF00008332689 fq.gz 90.3 MB
EGAF00008332697 fq.gz 106.6 MB
EGAF00008332703 fq.gz 68.7 MB
EGAF00008332713 fq.gz 77.5 MB
EGAF00008332718 fq.gz 42.4 MB
EGAF00008332728 fq.gz 46.5 MB
EGAF00008332736 fq.gz 22.5 MB
EGAF00008332744 fq.gz 24.6 MB
EGAF00008332751 fq.gz 93.3 MB
EGAF00008332762 fq.gz 109.3 MB
EGAF00008332768 fq.gz 79.0 MB
EGAF00008332777 fq.gz 89.1 MB
EGAF00008332783 fq.gz 84.1 MB
EGAF00008332792 fq.gz 92.5 MB
EGAF00008332797 fq.gz 19.0 MB
EGAF00008332805 fq.gz 20.0 MB
EGAF00008332813 fq.gz 115.4 MB
EGAF00008332826 fq.gz 129.3 MB
EGAF00008332829 fq.gz 42.9 MB
EGAF00008332837 fq.gz 46.7 MB
EGAF00008332846 fq.gz 100.3 MB
EGAF00008332855 fq.gz 114.0 MB
EGAF00008332862 fq.gz 47.7 MB
EGAF00008332872 fq.gz 52.9 MB
EGAF00008332878 fq.gz 62.3 MB
EGAF00008332886 fq.gz 71.0 MB
EGAF00008332894 fq.gz 38.5 MB
EGAF00008332903 fq.gz 41.9 MB
EGAF00008332908 fq.gz 43.0 MB
EGAF00008332919 fq.gz 47.1 MB
EGAF00008332925 fq.gz 18.1 MB
EGAF00008332934 fq.gz 19.5 MB
EGAF00008332944 fq.gz 204.1 MB
EGAF00008332950 fq.gz 237.7 MB
EGAF00008332958 fq.gz 59.2 MB
EGAF00008332965 fq.gz 67.1 MB
EGAF00008332975 fq.gz 57.9 MB
EGAF00008332981 fq.gz 66.1 MB
EGAF00008332989 fq.gz 78.3 MB
EGAF00008332998 fq.gz 88.6 MB
EGAF00008333003 fq.gz 22.5 MB
EGAF00008333012 fq.gz 24.3 MB
EGAF00008333021 fq.gz 21.5 MB
EGAF00008333027 fq.gz 23.3 MB
EGAF00008333037 fq.gz 16.5 MB
EGAF00008333045 fq.gz 17.9 MB
EGAF00008333055 fq.gz 7.9 MB
EGAF00008333063 fq.gz 8.4 MB
EGAF00008333079 fq.gz 26.5 MB
EGAF00008333084 fq.gz 29.4 MB
EGAF00008333091 fq.gz 25.8 MB
EGAF00008333098 fq.gz 28.6 MB
EGAF00008333108 fq.gz 36.0 MB
EGAF00008333116 fq.gz 41.1 MB
EGAF00008333126 fq.gz 56.2 MB
EGAF00008333133 fq.gz 60.7 MB
EGAF00008333143 fq.gz 82.8 MB
EGAF00008333150 fq.gz 92.9 MB
EGAF00008333158 fq.gz 54.6 MB
EGAF00008333165 fq.gz 60.9 MB
EGAF00008333172 fq.gz 13.6 MB
EGAF00008333178 fq.gz 14.7 MB
EGAF00008333186 fq.gz 115.4 MB
EGAF00008333193 fq.gz 136.0 MB
EGAF00008333199 fq.gz 29.0 MB
EGAF00008333205 fq.gz 32.7 MB
EGAF00008333215 fq.gz 71.9 MB
EGAF00008333221 fq.gz 80.4 MB
EGAF00008333227 fq.gz 67.3 MB
EGAF00008333233 fq.gz 74.7 MB
EGAF00008333240 fq.gz 27.6 MB
EGAF00008333253 fq.gz 62.0 MB
EGAF00008333259 fq.gz 71.6 MB
EGAF00008333267 fq.gz 7.0 MB
EGAF00008333274 fq.gz 7.3 MB
EGAF00008333282 fq.gz 67.5 MB
EGAF00008333287 fq.gz 74.0 MB
EGAF00008333293 fq.gz 127.5 MB
EGAF00008333298 fq.gz 148.2 MB
EGAF00008333305 fq.gz 60.8 MB
EGAF00008333311 fq.gz 71.6 MB
EGAF00008333317 fq.gz 17.2 MB
EGAF00008333322 fq.gz 19.0 MB
EGAF00008333329 fq.gz 14.9 MB
EGAF00008333334 fq.gz 16.0 MB
EGAF00008333443 fq.gz 105.7 MB
EGAF00008333448 fq.gz 71.7 MB
EGAF00008333489 fq.gz 96.5 MB
EGAF00008333506 fq.gz 62.4 MB
EGAF00008333508 fq.gz 124.2 MB
EGAF00008333511 fq.gz 106.9 MB
EGAF00008333521 fq.gz 34.3 MB
EGAF00008333526 fq.gz 37.8 MB
EGAF00008333533 fq.gz 30.4 MB
EGAF00008333538 fq.gz 34.1 MB
EGAF00008333545 fq.gz 22.5 MB
EGAF00008333550 fq.gz 24.0 MB
EGAF00008333557 fq.gz 49.1 MB
EGAF00008333562 fq.gz 54.4 MB
EGAF00008333570 fq.gz 35.5 MB
EGAF00008333575 fq.gz 37.9 MB
EGAF00008333581 fq.gz 30.9 MB
EGAF00008333586 fq.gz 34.6 MB
EGAF00008333593 fq.gz 42.6 MB
EGAF00008333598 fq.gz 46.8 MB
EGAF00008333605 fq.gz 78.4 MB
EGAF00008333610 fq.gz 91.8 MB
EGAF00008333617 fq.gz 17.0 MB
EGAF00008333622 fq.gz 18.5 MB
EGAF00008333629 fq.gz 13.7 MB
EGAF00008333634 fq.gz 14.9 MB
EGAF00008333641 fq.gz 17.8 MB
EGAF00008333646 fq.gz 19.5 MB
EGAF00008333653 fq.gz 29.8 MB
EGAF00008333658 fq.gz 32.9 MB
EGAF00008333665 fq.gz 36.1 MB
EGAF00008333670 fq.gz 40.6 MB
EGAF00008333677 fq.gz 15.7 MB
EGAF00008333682 fq.gz 16.8 MB
EGAF00008333690 fq.gz 53.3 MB
EGAF00008333695 fq.gz 60.0 MB
EGAF00008333701 fq.gz 52.5 MB
EGAF00008333706 fq.gz 57.1 MB
EGAF00008333714 fq.gz 69.1 MB
EGAF00008333719 fq.gz 82.3 MB
EGAF00008333726 fq.gz 62.1 MB
EGAF00008333731 fq.gz 70.2 MB
EGAF00008333737 fq.gz 26.4 MB
EGAF00008333742 fq.gz 28.7 MB
EGAF00008333750 fq.gz 64.7 MB
EGAF00008333756 fq.gz 72.2 MB
EGAF00008333761 fq.gz 70.2 MB
EGAF00008333843 fq.gz 82.3 MB
EGAF00008333847 fq.gz 28.2 MB
EGAF00008333854 fq.gz 32.4 MB
EGAF00008333860 fq.gz 94.6 MB
EGAF00008333967 fq.gz 110.3 MB
EGAF00008333971 fq.gz 65.5 MB
EGAF00008333979 fq.gz 71.6 MB
EGAF00008333985 fq.gz 14.4 MB
EGAF00008333988 fq.gz 15.8 MB
EGAF00008333999 fq.gz 36.5 MB
EGAF00008334005 fq.gz 41.4 MB
EGAF00008334011 fq.gz 45.4 MB
EGAF00008334022 fq.gz 33.4 MB
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EGAF00008334026 fq.gz 95.0 MB
EGAF00008334032 fq.gz 6.5 MB
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EGAF00008334051 fq.gz 40.9 MB
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EGAF00008334075 fq.gz 102.2 MB
EGAF00008334077 fq.gz 87.9 MB
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EGAF00008334092 fq.gz 54.6 MB
EGAF00008334102 fq.gz 65.6 MB
EGAF00008334105 fq.gz 59.0 MB
EGAF00008334112 fq.gz 65.5 MB
EGAF00008334116 fq.gz 46.9 MB
EGAF00008334124 fq.gz 52.8 MB
EGAF00008334128 fq.gz 30.2 MB
EGAF00008334135 fq.gz 33.5 MB
EGAF00008334140 fq.gz 50.4 MB
EGAF00008334147 fq.gz 54.3 MB
EGAF00008334153 fq.gz 72.6 MB
EGAF00008334160 fq.gz 85.1 MB
EGAF00008334165 fq.gz 79.6 MB
EGAF00008334233 fq.gz 93.9 MB
EGAF00008334339 fq.gz 16.4 MB
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EGAF00008334468 fq.gz 152.7 MB
EGAF00008334549 fq.gz 53.3 MB
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EGAF00008334673 fq.gz 145.4 MB
EGAF00008334776 fq.gz 172.1 MB
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EGAF00008334871 fq.gz 49.7 MB
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659 Files (34.6 GB)