SECRETO Oral metagenome

The dataset comprises data for n=329 participants who underwent saliva sampling. Shotgun metagenomic paired-end sequencing was conducted using the Illumina NovaSeq 6000 platform, and the resulting files are in FASTQ format.

26/02/2024
331 samples
DAC: EGAC00001003449
Technology: Illumina NovaSeq 6000

Access Policy1 Study Files

Metadata

Request Access

SECRETO Oral study consortia Consortium Data Access Committee

Pseudonymised data and/or biological samples are issued for the purpose of research by the SECRETO Oral study consortia of the University of Helsinki and Helsinki University Hospital. This is based on the Human Genes Research Act (https://www.riigiteataja.ee/en/eli/531102013003/consolide). Access to summary data and individual-level genotype data is available by application to the SECRETO Oral Study Consortium Data Access Committee (CDAC). Access to data will be granted to qualified investigators for appropriate use. The CDAC also controls the individual-level genotype data for the 329 SECRETO Oral samples.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS00001007505	SECRETO Oral metagenome study	Metagenomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size	Quality Report
EGAF00008330891	fq.gz	79.0 MB	Report
EGAF00008330905	fq.gz	43.4 MB	Report
EGAF00008330908	fq.gz	86.7 MB	Report
EGAF00008330911	fq.gz	47.3 MB	Report
EGAF00008330925	fq.gz	50.4 MB	Report
EGAF00008330935	fq.gz	56.5 MB	Report
EGAF00008330947	fq.gz	69.9 MB	Report
EGAF00008330955	fq.gz	80.5 MB	Report
EGAF00008330969	fq.gz	86.2 MB	Report
EGAF00008330983	fq.gz	45.5 MB	Report
EGAF00008330994	fq.gz	41.3 MB	Report
EGAF00008330998	fq.gz	78.2 MB	Report
EGAF00008331001	fq.gz	37.5 MB	Report
EGAF00008331007	fq.gz	41.4 MB	Report
EGAF00008331024	fq.gz	22.0 MB	Report
EGAF00008331025	fq.gz	23.4 MB	Report
EGAF00008331032	fq.gz	27.2 MB	Report
EGAF00008331045	fq.gz	29.8 MB	Report
EGAF00008331050	fq.gz	118.5 MB	Report
EGAF00008331063	fq.gz	82.6 MB	Report
EGAF00008331076	fq.gz	139.9 MB	Report
EGAF00008331079	fq.gz	92.8 MB	Report
EGAF00008331091	fq.gz	84.3 MB	Report
EGAF00008331095	fq.gz	93.9 MB	Report
EGAF00008331105	fq.gz	24.1 MB	Report
EGAF00008331114	fq.gz	25.9 MB	Report
EGAF00008331125	fq.gz	87.3 MB	Report
EGAF00008331132	fq.gz	96.3 MB	Report
EGAF00008331140	fq.gz	25.8 MB	Report
EGAF00008331153	fq.gz	27.9 MB	Report
EGAF00008331154	fq.gz	25.5 MB	Report
EGAF00008331161	fq.gz	27.8 MB	Report
EGAF00008331168	fq.gz	23.9 MB	Report
EGAF00008331184	fq.gz	26.4 MB	Report
EGAF00008331191	fq.gz	16.9 MB	Report
EGAF00008331198	fq.gz	18.0 MB	Report
EGAF00008331211	fq.gz	36.7 MB	Report
EGAF00008331218	fq.gz	39.9 MB	Report
EGAF00008331228	fq.gz	105.2 MB	Report
EGAF00008331234	fq.gz	118.0 MB	Report
EGAF00008331241	fq.gz	17.6 MB	Report
EGAF00008331257	fq.gz	18.8 MB	Report
EGAF00008331263	fq.gz	41.1 MB	Report
EGAF00008331274	fq.gz	44.2 MB	Report
EGAF00008331281	fq.gz	202.9 MB	Report
EGAF00008331293	fq.gz	239.7 MB	Report
EGAF00008331299	fq.gz	22.2 MB	Report
EGAF00008331306	fq.gz	24.0 MB	Report
EGAF00008331318	fq.gz	36.9 MB	Report
EGAF00008331323	fq.gz	41.0 MB	Report
EGAF00008331331	fq.gz	97.4 MB	Report
EGAF00008331343	fq.gz	112.6 MB	Report
EGAF00008331359	fq.gz	14.2 MB	Report
EGAF00008331364	fq.gz	15.1 MB	Report
EGAF00008331370	fq.gz	21.5 MB	Report
EGAF00008331377	fq.gz	23.6 MB	Report
EGAF00008331395	fq.gz	57.4 MB	Report
EGAF00008331408	fq.gz	51.7 MB	Report
EGAF00008331410	fq.gz	63.7 MB	Report
EGAF00008331419	fq.gz	56.0 MB	Report
EGAF00008331423	fq.gz	45.2 MB	Report
EGAF00008331437	fq.gz	29.2 MB	Report
EGAF00008331452	fq.gz	56.0 MB	Report
EGAF00008331464	fq.gz	40.7 MB	Report
EGAF00008331466	fq.gz	32.0 MB	Report
EGAF00008331469	fq.gz	61.6 MB	Report
EGAF00008331477	fq.gz	138.9 MB	Report
EGAF00008331483	fq.gz	159.6 MB	Report
EGAF00008331492	fq.gz	55.1 MB	Report
EGAF00008331503	fq.gz	62.2 MB	Report
EGAF00008331514	fq.gz	19.3 MB	Report
EGAF00008331521	fq.gz	21.0 MB	Report
EGAF00008331535	fq.gz	24.1 MB	Report
EGAF00008331541	fq.gz	26.4 MB	Report
EGAF00008331557	fq.gz	117.0 MB	Report
EGAF00008331565	fq.gz	132.5 MB	Report
EGAF00008331575	fq.gz	18.2 MB	Report
EGAF00008331582	fq.gz	19.7 MB	Report
EGAF00008331590	fq.gz	95.6 MB	Report
EGAF00008331603	fq.gz	109.1 MB	Report
EGAF00008331609	fq.gz	30.1 MB	Report
EGAF00008331620	fq.gz	32.5 MB	Report
EGAF00008331630	fq.gz	90.9 MB	Report
EGAF00008331640	fq.gz	108.3 MB	Report
EGAF00008331981	fq.gz	71.4 MB	Report
EGAF00008331999	fq.gz	20.4 MB	Report
EGAF00008332012	fq.gz	64.5 MB	Report
EGAF00008332015	fq.gz	100.5 MB	Report
EGAF00008332051	fq.gz	81.8 MB	Report
EGAF00008332105	fq.gz	38.6 MB	Report
EGAF00008332137	fq.gz	61.5 MB	Report
EGAF00008332170	fq.gz	33.4 MB	Report
EGAF00008332172	fq.gz	21.6 MB	Report
EGAF00008332188	fq.gz	35.9 MB	Report
EGAF00008332211	fq.gz	64.0 MB	Report
EGAF00008332247	fq.gz	72.0 MB	Report
EGAF00008332255	fq.gz	68.2 MB	Report
EGAF00008332262	fq.gz	15.0 MB	Report
EGAF00008332274	fq.gz	92.4 MB	Report
EGAF00008332292	fq.gz	35.1 MB	Report
EGAF00008332293	fq.gz	16.3 MB	Report
EGAF00008332299	fq.gz	89.3 MB	Report
EGAF00008332309	fq.gz	10.2 MB	Report
EGAF00008332326	fq.gz	10.8 MB	Report
EGAF00008332337	fq.gz	25.5 MB	Report
EGAF00008332347	fq.gz	27.1 MB	Report
EGAF00008332357	fq.gz	73.1 MB	Report
EGAF00008332369	fq.gz	81.4 MB	Report
EGAF00008332378	fq.gz	71.4 MB	Report
EGAF00008332396	fq.gz	49.4 MB	Report
EGAF00008332402	fq.gz	79.1 MB	Report
EGAF00008332407	fq.gz	57.3 MB	Report
EGAF00008332416	fq.gz	47.2 MB	Report
EGAF00008332426	fq.gz	52.1 MB	Report
EGAF00008332436	fq.gz	75.7 MB	Report
EGAF00008332444	fq.gz	85.7 MB	Report
EGAF00008332451	fq.gz	63.8 MB	Report
EGAF00008332459	fq.gz	71.6 MB	Report
EGAF00008332469	fq.gz	24.5 MB	Report
EGAF00008332479	fq.gz	26.3 MB	Report
EGAF00008332488	fq.gz	9.4 MB	Report
EGAF00008332495	fq.gz	10.1 MB	Report
EGAF00008332506	fq.gz	22.0 MB	Report
EGAF00008332519	fq.gz	24.4 MB	Report
EGAF00008332523	fq.gz	64.6 MB	Report
EGAF00008332537	fq.gz	74.2 MB	Report
EGAF00008332545	fq.gz	34.9 MB	Report
EGAF00008332554	fq.gz	38.9 MB	Report
EGAF00008332564	fq.gz	74.8 MB	Report
EGAF00008332573	fq.gz	84.8 MB	Report
EGAF00008332582	fq.gz	47.0 MB	Report
EGAF00008332589	fq.gz	52.5 MB	Report
EGAF00008332600	fq.gz	23.2 MB	Report
EGAF00008332611	fq.gz	25.1 MB	Report
EGAF00008332619	fq.gz	19.3 MB	Report
EGAF00008332629	fq.gz	21.0 MB	Report
EGAF00008332637	fq.gz	62.5 MB	Report
EGAF00008332647	fq.gz	70.0 MB	Report
EGAF00008332655	fq.gz	32.4 MB	Report
EGAF00008332665	fq.gz	35.6 MB	Report
EGAF00008332672	fq.gz	13.0 MB	Report
EGAF00008332681	fq.gz	13.7 MB	Report
EGAF00008332689	fq.gz	90.3 MB	Report
EGAF00008332697	fq.gz	106.6 MB	Report
EGAF00008332703	fq.gz	68.7 MB	Report
EGAF00008332713	fq.gz	77.5 MB	Report
EGAF00008332718	fq.gz	42.4 MB	Report
EGAF00008332728	fq.gz	46.5 MB	Report
EGAF00008332736	fq.gz	22.5 MB	Report
EGAF00008332744	fq.gz	24.6 MB	Report
EGAF00008332751	fq.gz	93.3 MB	Report
EGAF00008332762	fq.gz	109.3 MB	Report
EGAF00008332768	fq.gz	79.0 MB	Report
EGAF00008332777	fq.gz	89.1 MB	Report
EGAF00008332783	fq.gz	84.1 MB	Report
EGAF00008332792	fq.gz	92.5 MB	Report
EGAF00008332797	fq.gz	19.0 MB	Report
EGAF00008332805	fq.gz	20.0 MB	Report
EGAF00008332813	fq.gz	115.4 MB	Report
EGAF00008332826	fq.gz	129.3 MB	Report
EGAF00008332829	fq.gz	42.9 MB	Report
EGAF00008332837	fq.gz	46.7 MB	Report
EGAF00008332846	fq.gz	100.3 MB	Report
EGAF00008332855	fq.gz	114.0 MB	Report
EGAF00008332862	fq.gz	47.7 MB	Report
EGAF00008332872	fq.gz	52.9 MB	Report
EGAF00008332878	fq.gz	62.3 MB	Report
EGAF00008332886	fq.gz	71.0 MB	Report
EGAF00008332894	fq.gz	38.5 MB	Report
EGAF00008332903	fq.gz	41.9 MB	Report
EGAF00008332908	fq.gz	43.0 MB	Report
EGAF00008332919	fq.gz	47.1 MB	Report
EGAF00008332925	fq.gz	18.1 MB	Report
EGAF00008332934	fq.gz	19.5 MB	Report
EGAF00008332944	fq.gz	204.1 MB	Report
EGAF00008332950	fq.gz	237.7 MB	Report
EGAF00008332958	fq.gz	59.2 MB	Report
EGAF00008332965	fq.gz	67.1 MB	Report
EGAF00008332975	fq.gz	57.9 MB	Report
EGAF00008332981	fq.gz	66.1 MB	Report
EGAF00008332989	fq.gz	78.3 MB	Report
EGAF00008332998	fq.gz	88.6 MB	Report
EGAF00008333003	fq.gz	22.5 MB	Report
EGAF00008333012	fq.gz	24.3 MB	Report
EGAF00008333021	fq.gz	21.5 MB	Report
EGAF00008333027	fq.gz	23.3 MB	Report
EGAF00008333037	fq.gz	16.5 MB	Report
EGAF00008333045	fq.gz	17.9 MB	Report
EGAF00008333055	fq.gz	7.9 MB	Report
EGAF00008333063	fq.gz	8.4 MB	Report
EGAF00008333079	fq.gz	26.5 MB	Report
EGAF00008333084	fq.gz	29.4 MB	Report
EGAF00008333091	fq.gz	25.8 MB	Report
EGAF00008333098	fq.gz	28.6 MB	Report
EGAF00008333108	fq.gz	36.0 MB	Report
EGAF00008333116	fq.gz	41.1 MB	Report
EGAF00008333126	fq.gz	56.2 MB	Report
EGAF00008333133	fq.gz	60.7 MB	Report
EGAF00008333143	fq.gz	82.8 MB	Report
EGAF00008333150	fq.gz	92.9 MB	Report
EGAF00008333158	fq.gz	54.6 MB	Report
EGAF00008333165	fq.gz	60.9 MB	Report
EGAF00008333172	fq.gz	13.6 MB	Report
EGAF00008333178	fq.gz	14.7 MB	Report
EGAF00008333186	fq.gz	115.4 MB	Report
EGAF00008333193	fq.gz	136.0 MB	Report
EGAF00008333199	fq.gz	29.0 MB	Report
EGAF00008333205	fq.gz	32.7 MB	Report
EGAF00008333215	fq.gz	71.9 MB	Report
EGAF00008333221	fq.gz	80.4 MB	Report
EGAF00008333227	fq.gz	67.3 MB	Report
EGAF00008333233	fq.gz	74.7 MB	Report
EGAF00008333240	fq.gz	27.6 MB	Report
EGAF00008333253	fq.gz	62.0 MB	Report
EGAF00008333259	fq.gz	71.6 MB	Report
EGAF00008333267	fq.gz	7.0 MB	Report
EGAF00008333274	fq.gz	7.3 MB	Report
EGAF00008333282	fq.gz	67.5 MB	Report
EGAF00008333287	fq.gz	74.0 MB	Report
EGAF00008333293	fq.gz	127.5 MB	Report
EGAF00008333298	fq.gz	148.2 MB	Report
EGAF00008333305	fq.gz	60.8 MB	Report
EGAF00008333311	fq.gz	71.6 MB	Report
EGAF00008333317	fq.gz	17.2 MB	Report
EGAF00008333322	fq.gz	19.0 MB	Report
EGAF00008333329	fq.gz	14.9 MB	Report
EGAF00008333334	fq.gz	16.0 MB	Report
EGAF00008333443	fq.gz	105.7 MB	Report
EGAF00008333448	fq.gz	71.7 MB	Report
EGAF00008333489	fq.gz	96.5 MB	Report
EGAF00008333506	fq.gz	62.4 MB	Report
EGAF00008333508	fq.gz	124.2 MB	Report
EGAF00008333511	fq.gz	106.9 MB	Report
EGAF00008333521	fq.gz	34.3 MB	Report
EGAF00008333526	fq.gz	37.8 MB	Report
EGAF00008333533	fq.gz	30.4 MB	Report
EGAF00008333538	fq.gz	34.1 MB	Report
EGAF00008333545	fq.gz	22.5 MB	Report
EGAF00008333550	fq.gz	24.0 MB	Report
EGAF00008333557	fq.gz	49.1 MB	Report
EGAF00008333562	fq.gz	54.4 MB	Report
EGAF00008333570	fq.gz	35.5 MB	Report
EGAF00008333575	fq.gz	37.9 MB	Report
EGAF00008333581	fq.gz	30.9 MB	Report
EGAF00008333586	fq.gz	34.6 MB	Report
EGAF00008333593	fq.gz	42.6 MB	Report
EGAF00008333598	fq.gz	46.8 MB	Report
EGAF00008333605	fq.gz	78.4 MB	Report
EGAF00008333610	fq.gz	91.8 MB	Report
EGAF00008333617	fq.gz	17.0 MB	Report
EGAF00008333622	fq.gz	18.5 MB	Report
EGAF00008333629	fq.gz	13.7 MB	Report
EGAF00008333634	fq.gz	14.9 MB	Report
EGAF00008333641	fq.gz	17.8 MB	Report
EGAF00008333646	fq.gz	19.5 MB	Report
EGAF00008333653	fq.gz	29.8 MB	Report
EGAF00008333658	fq.gz	32.9 MB	Report
EGAF00008333665	fq.gz	36.1 MB	Report
EGAF00008333670	fq.gz	40.6 MB	Report
EGAF00008333677	fq.gz	15.7 MB	Report
EGAF00008333682	fq.gz	16.8 MB	Report
EGAF00008333690	fq.gz	53.3 MB	Report
EGAF00008333695	fq.gz	60.0 MB	Report
EGAF00008333701	fq.gz	52.5 MB	Report
EGAF00008333706	fq.gz	57.1 MB	Report
EGAF00008333714	fq.gz	69.1 MB	Report
EGAF00008333719	fq.gz	82.3 MB	Report
EGAF00008333726	fq.gz	62.1 MB	Report
EGAF00008333731	fq.gz	70.2 MB	Report
EGAF00008333737	fq.gz	26.4 MB	Report
EGAF00008333742	fq.gz	28.7 MB	Report
EGAF00008333750	fq.gz	64.7 MB	Report
EGAF00008333756	fq.gz	72.2 MB	Report
EGAF00008333761	fq.gz	70.2 MB	Report
EGAF00008333843	fq.gz	82.3 MB	Report
EGAF00008333847	fq.gz	28.2 MB	Report
EGAF00008333854	fq.gz	32.4 MB	Report
EGAF00008333860	fq.gz	94.6 MB	Report
EGAF00008333967	fq.gz	110.3 MB	Report
EGAF00008333971	fq.gz	65.5 MB	Report
EGAF00008333979	fq.gz	71.6 MB	Report
EGAF00008333985	fq.gz	14.4 MB	Report
EGAF00008333988	fq.gz	15.8 MB	Report
EGAF00008333999	fq.gz	36.5 MB	Report
EGAF00008334005	fq.gz	41.4 MB	Report
EGAF00008334011	fq.gz	45.4 MB	Report
EGAF00008334022	fq.gz	33.4 MB	Report
EGAF00008334024	fq.gz	81.5 MB	Report
EGAF00008334026	fq.gz	95.0 MB	Report
EGAF00008334032	fq.gz	6.5 MB	Report
EGAF00008334039	fq.gz	6.9 MB	Report
EGAF00008334042	fq.gz	37.4 MB	Report
EGAF00008334051	fq.gz	40.9 MB	Report
EGAF00008334057	fq.gz	51.5 MB	Report
EGAF00008334063	fq.gz	57.3 MB	Report
EGAF00008334075	fq.gz	102.2 MB	Report
EGAF00008334077	fq.gz	87.9 MB	Report
EGAF00008334080	fq.gz	34.2 MB	Report
EGAF00008334087	fq.gz	38.2 MB	Report
EGAF00008334092	fq.gz	54.6 MB	Report
EGAF00008334102	fq.gz	65.6 MB	Report
EGAF00008334105	fq.gz	59.0 MB	Report
EGAF00008334112	fq.gz	65.5 MB	Report
EGAF00008334116	fq.gz	46.9 MB	Report
EGAF00008334124	fq.gz	52.8 MB	Report
EGAF00008334128	fq.gz	30.2 MB	Report
EGAF00008334135	fq.gz	33.5 MB	Report
EGAF00008334140	fq.gz	50.4 MB	Report
EGAF00008334147	fq.gz	54.3 MB	Report
EGAF00008334153	fq.gz	72.6 MB	Report
EGAF00008334160	fq.gz	85.1 MB	Report
EGAF00008334165	fq.gz	79.6 MB	Report
EGAF00008334233	fq.gz	93.9 MB	Report
EGAF00008334339	fq.gz	16.4 MB	Report
EGAF00008334404	fq.gz	129.3 MB	Report
EGAF00008334455	fq.gz	14.7 MB	Report
EGAF00008334468	fq.gz	152.7 MB	Report
EGAF00008334549	fq.gz	53.3 MB	Report
EGAF00008334610	fq.gz	60.1 MB	Report
EGAF00008334673	fq.gz	145.4 MB	Report
EGAF00008334776	fq.gz	172.1 MB	Report
EGAF00008334806	fq.gz	61.9 MB	Report
EGAF00008334849	fq.gz	68.7 MB	Report
EGAF00008334871	fq.gz	49.7 MB	Report
EGAF00008334888	fq.gz	55.1 MB	Report
EGAF00008334894	fq.gz	2.3 MB	Report
EGAF00008334903	fq.gz	2.4 MB	Report
EGAF00008334908	fq.gz	44.7 MB	Report
EGAF00008334914	fq.gz	49.1 MB	Report
EGAF00008334921	fq.gz	42.2 MB	Report
EGAF00008334928	fq.gz	46.2 MB	Report
EGAF00008334932	fq.gz	25.0 MB	Report
EGAF00008334939	fq.gz	27.0 MB	Report
EGAF00008334944	fq.gz	78.1 MB	Report
EGAF00008334952	fq.gz	89.2 MB	Report
EGAF00008334957	fq.gz	67.3 MB	Report
EGAF00008334964	fq.gz	76.9 MB	Report
EGAF00008334969	fq.gz	53.7 MB	Report
EGAF00008334976	fq.gz	61.8 MB	Report
EGAF00008334981	fq.gz	99.5 MB	Report
EGAF00008334987	fq.gz	115.6 MB	Report
EGAF00008334992	fq.gz	18.6 MB	Report
EGAF00008334998	fq.gz	20.5 MB	Report
EGAF00008335003	fq.gz	47.1 MB	Report
EGAF00008335008	fq.gz	54.5 MB	Report
EGAF00008335013	fq.gz	58.8 MB	Report
EGAF00008335018	fq.gz	66.4 MB	Report
EGAF00008335023	fq.gz	66.7 MB	Report
EGAF00008335028	fq.gz	76.8 MB	Report
EGAF00008335033	fq.gz	66.6 MB	Report
EGAF00008335038	fq.gz	76.2 MB	Report
EGAF00008335074	fq.gz	51.3 MB	Report
EGAF00008335188	fq.gz	69.7 MB	Report
EGAF00008335283	fq.gz	56.2 MB	Report
EGAF00008335312	fq.gz	54.2 MB	Report
EGAF00008335376	fq.gz	62.0 MB	Report
EGAF00008335430	fq.gz	28.9 MB	Report
EGAF00008335504	fq.gz	31.7 MB	Report
EGAF00008335555	fq.gz	38.2 MB	Report
EGAF00008335613	fq.gz	41.3 MB	Report
EGAF00008335702	fq.gz	54.5 MB	Report
EGAF00008335729	fq.gz	62.1 MB	Report
EGAF00008335746	fq.gz	33.2 MB	Report
EGAF00008335753	fq.gz	36.2 MB	Report
EGAF00008335762	fq.gz	53.2 MB	Report
EGAF00008335767	fq.gz	59.2 MB	Report
EGAF00008335772	fq.gz	119.9 MB	Report
EGAF00008335778	fq.gz	144.8 MB	Report
EGAF00008335781	fq.gz	34.3 MB	Report
EGAF00008335786	fq.gz	38.7 MB	Report
EGAF00008335876	fq.gz	26.9 MB	Report
EGAF00008335905	fq.gz	29.7 MB	Report
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EGAF00008338413	fq.gz	16.3 MB	Report
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EGAF00008338442	fq.gz	90.5 MB	Report
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EGAF00008338449	fq.gz	8.4 kB	Report
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EGAF00008338461	fq.gz	9.5 kB	Report
EGAF00008338468	fq.gz	9.7 kB	Report
659 Files (34.6 GB)