About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Bulk RNAseq of cultured fibroblasts

Fastq files from bulk RNAseq of fibroblasts after culture and facs sorting (N=9). Sorted FAP+ CAF cells RNAs were extracted using Qiagen miRNeasy Kit (Qiagen, #217004) according to the manufacturer's instructions. Verification of RNA integrity and quality was performed using the Agilent RNA 6000 nano Kit (Agilent Technologies, #5067-1511). cDNA libraries were prepared using the TruSeq Stranded mRNA Kit (Illumina, #20020594) followed by sequencing on NovaSeq (Illumina).

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Data Access policy

Access to the sequence level data produced by the «U830 Stress and Cancer» laboratory at the Institut Curie is controlled by Fatima Mechta-Grigoriou, Principal Investigator (DAC). Access to data will be granted to qualified investigators for appropriate use after request to Fatima.Mechta-Grigoriou@curie.fr

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000220 Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000063388 fastq.gz 2.4 GB Report
EGAF50000063389 fastq.gz 2.4 GB Report
EGAF50000063390 fastq.gz 2.1 GB Report
EGAF50000063391 fastq.gz 2.1 GB Report
EGAF50000063396 fastq.gz 2.5 GB Report
EGAF50000063397 fastq.gz 2.5 GB Report
EGAF50000087503 fastq.gz 2.1 GB Report
EGAF50000087504 fastq.gz 2.0 GB Report
EGAF50000087505 fastq.gz 2.4 GB Report
EGAF50000087506 fastq.gz 2.4 GB Report
EGAF50000087507 fastq.gz 2.3 GB Report
EGAF50000087508 fastq.gz 2.2 GB Report
EGAF50000087509 fastq.gz 1.9 GB Report
EGAF50000087510 fastq.gz 1.9 GB Report
EGAF50000087511 fastq.gz 2.7 GB Report
EGAF50000087512 fastq.gz 2.7 GB Report
EGAF50000087535 fastq.gz 2.0 GB Report
EGAF50000087536 fastq.gz 2.0 GB Report
18 Files (40.6 GB)