About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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RNA sequencing

For RNA sequencing: All sample numbers starting with 6717 are tumor samples which has been sequenced using transcriptomics (see BAM files). It concerns biopsies of metastatic lesions from patients with BRAFV600 mutated melanoma, obtained before, during and after the study treatment (see samples metadata). RNA sequencing is performed using the Illumina Novaseq 6000 system.

Request Access

Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy

Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007709 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000092980 cram 978.2 MB Report
EGAF50000092981 cram 647.5 MB Report
EGAF50000092982 cram 756.3 MB Report
EGAF50000092983 cram 657.2 MB Report
EGAF50000092984 cram 671.6 MB Report
EGAF50000092985 cram 543.9 MB Report
EGAF50000092986 cram 662.5 MB Report
EGAF50000092987 cram 680.1 MB Report
EGAF50000092988 cram 719.1 MB Report
EGAF50000092989 cram 615.3 MB Report
EGAF50000092990 cram 634.8 MB Report
EGAF50000092991 cram 600.6 MB Report
EGAF50000092992 cram 788.6 MB Report
EGAF50000092993 cram 703.0 MB Report
EGAF50000092994 cram 644.6 MB Report
EGAF50000092995 cram 740.9 MB Report
EGAF50000092996 cram 685.4 MB Report
EGAF50000092997 cram 744.7 MB Report
EGAF50000092998 cram 724.4 MB Report
EGAF50000092999 cram 815.5 MB Report
EGAF50000093000 cram 576.3 MB Report
EGAF50000093001 cram 630.4 MB Report
EGAF50000093002 cram 943.7 MB Report
EGAF50000093003 cram 715.6 MB Report
EGAF50000093004 cram 713.7 MB Report
EGAF50000093023 cram 1.5 GB Report
EGAF50000093024 cram 696.1 MB Report
EGAF50000093025 cram 696.0 MB Report
EGAF50000093026 cram 421.2 MB Report
EGAF50000093027 cram 776.8 MB Report
30 Files (21.7 GB)