TOAPR-B patient cell-free DNA WGS and WES

Sequencing files for TOPARP-B patients as described in manuscript

02/10/2024
255 samples
DAC: EGAC50000000200
Technologies: Illumina NovaSeq 6000, NextSeq 500

Access Policy2 Studies History 414 Files (6.6 TB)

Metadata

Request Access

TOPARP-B Sequencing Data Sharing Policy

The dataset is accessible to the scientific community via EGA. Researchers interested in accessing the dataset may do so by following the procedures outlined on the platform, including providing details on the intended usage and agreeing to the platform's terms of use. Access to the dataset is governed by the platform's policies, which encompass acknowledgment of the original data source, adherence to ethical standards and legal regulations. Users are expected to handle the data with care, maintaining confidentiality and complying with data protection laws. Proper citation of the dataset in publications is required. Collaborative initiatives for further analysis or interpretation are strongly encouraged. This data access policy reflects our commitment to transparent and responsible data sharing practices, promoting collaboration and innovation within the research community.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS50000000280	TOPARP-B patient cell-free DNA WGS	Whole Genome Sequencing
EGAS50000000281	TOPARP-B patient cell-free DNA targeted sequencing	Exome Sequencing

Dataset Released 02/10/2024
Corrected minor typo in study title - apologies. 02/10/2024

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID	File Type	Size
EGAF50000095382	fastq.gz	135.3 GB
EGAF50000095383	fastq.gz	52.1 GB
EGAF50000095384	fastq.gz	147.2 GB
EGAF50000095385	fastq.gz	41.8 GB
EGAF50000095386	fastq.gz	130.6 GB
EGAF50000095387	fastq.gz	137.7 GB
EGAF50000095388	fastq.gz	135.5 GB
EGAF50000095389	fastq.gz	147.0 GB
EGAF50000095390	fastq.gz	154.9 GB
EGAF50000095391	fastq.gz	146.1 GB
EGAF50000095392	fastq.gz	39.3 GB
EGAF50000095393	fastq.gz	41.4 GB
EGAF50000095394	fastq.gz	151.2 GB
EGAF50000095395	fastq.gz	105.1 GB
EGAF50000095396	fastq.gz	41.0 GB
EGAF50000095397	fastq.gz	108.9 GB
EGAF50000095398	fastq.gz	2.2 GB
EGAF50000095399	fastq.gz	2.2 GB
EGAF50000095400	fastq.gz	2.2 GB
EGAF50000095401	fastq.gz	2.2 GB
EGAF50000095402	fastq.gz	1.0 GB
EGAF50000095403	fastq.gz	1.0 GB
EGAF50000095404	fastq.gz	1.3 GB
EGAF50000095405	fastq.gz	1.3 GB
EGAF50000095406	fastq.gz	1.2 GB
EGAF50000095407	fastq.gz	1.2 GB
EGAF50000095408	fastq.gz	1.9 GB
EGAF50000095409	fastq.gz	1.9 GB
EGAF50000095410	fastq.gz	2.8 GB
EGAF50000095411	fastq.gz	42.2 GB
EGAF50000095412	fastq.gz	112.4 GB
EGAF50000095413	fastq.gz	117.4 GB
EGAF50000095414	fastq.gz	1.8 GB
EGAF50000095415	fastq.gz	1.8 GB
EGAF50000095416	fastq.gz	1.1 GB
EGAF50000095417	fastq.gz	122.8 GB
EGAF50000095418	fastq.gz	128.0 GB
EGAF50000095419	fastq.gz	3.6 GB
EGAF50000095420	fastq.gz	2.5 GB
EGAF50000095421	fastq.gz	2.0 GB
EGAF50000095422	fastq.gz	138.7 GB
EGAF50000095423	fastq.gz	65.5 GB
EGAF50000095424	fastq.gz	68.0 GB
EGAF50000095425	bam	5.7 kB
EGAF50000095426	bam	11.2 kB
EGAF50000095427	bam	2.4 GB
EGAF50000095428	fastq.gz	2.2 GB
EGAF50000095429	fastq.gz	2.2 GB
EGAF50000095430	fastq.gz	1.0 GB
EGAF50000095431	fastq.gz	3.6 GB
EGAF50000095432	fastq.gz	2.0 GB
EGAF50000095433	fastq.gz	1.1 GB
EGAF50000095434	fastq.gz	1.1 GB
EGAF50000095435	fastq.gz	1.2 GB
EGAF50000095436	fastq.gz	1.2 GB
EGAF50000095437	fastq.gz	951.6 MB
EGAF50000095438	fastq.gz	952.4 MB
EGAF50000095439	fastq.gz	1.6 GB
EGAF50000095440	fastq.gz	1.7 GB
EGAF50000095441	fastq.gz	1.6 GB
EGAF50000095442	fastq.gz	1.4 GB
EGAF50000095443	fastq.gz	2.1 GB
EGAF50000095444	fastq.gz	115.2 GB
EGAF50000095445	fastq.gz	1.6 GB
EGAF50000095446	fastq.gz	3.5 GB
EGAF50000095447	fastq.gz	1.5 GB
EGAF50000095448	fastq.gz	1.9 GB
EGAF50000095449	fastq.gz	1.1 GB
EGAF50000095450	fastq.gz	1.8 GB
EGAF50000095451	fastq.gz	2.0 GB
EGAF50000095452	fastq.gz	1.3 GB
EGAF50000095453	fastq.gz	2.4 GB
EGAF50000095454	fastq.gz	2.4 GB
EGAF50000095455	fastq.gz	759.3 MB
EGAF50000095456	fastq.gz	1.8 GB
EGAF50000095457	fastq.gz	1.0 GB
EGAF50000095458	fastq.gz	1.3 GB
EGAF50000095459	fastq.gz	2.9 GB
EGAF50000095460	fastq.gz	1.4 GB
EGAF50000095461	fastq.gz	1.9 GB
EGAF50000095462	fastq.gz	1.2 GB
EGAF50000095463	fastq.gz	661.2 MB
EGAF50000095464	fastq.gz	644.7 MB
EGAF50000095465	fastq.gz	1.3 GB
EGAF50000095466	fastq.gz	3.8 GB
EGAF50000095467	fastq.gz	1.8 GB
EGAF50000095468	fastq.gz	1.1 GB
EGAF50000095469	fastq.gz	782.5 MB
EGAF50000095470	fastq.gz	785.1 MB
EGAF50000095471	fastq.gz	2.3 GB
EGAF50000095472	fastq.gz	1.2 GB
EGAF50000095473	fastq.gz	5.4 GB
EGAF50000095474	fastq.gz	2.7 GB
EGAF50000095475	fastq.gz	1.7 GB
EGAF50000095476	fastq.gz	1.6 GB
EGAF50000095477	fastq.gz	1.8 GB
EGAF50000095478	fastq.gz	1.8 GB
EGAF50000095479	bam	2.9 GB
EGAF50000095480	bam	216.9 MB
EGAF50000095481	fastq.gz	2.3 GB
EGAF50000095482	bam	1.5 GB
EGAF50000095483	fastq.gz	2.2 GB
EGAF50000095484	fastq.gz	2.2 GB
EGAF50000095485	fastq.gz	2.3 GB
EGAF50000095486	fastq.gz	1.3 GB
EGAF50000095487	fastq.gz	1.6 GB
EGAF50000095488	fastq.gz	1.6 GB
EGAF50000095489	fastq.gz	1.1 GB
EGAF50000095490	fastq.gz	1.8 GB
EGAF50000095491	fastq.gz	1.3 GB
EGAF50000095492	fastq.gz	1.4 GB
EGAF50000095493	fastq.gz	1.3 GB
EGAF50000095494	fastq.gz	753.7 MB
EGAF50000095495	fastq.gz	2.0 GB
EGAF50000095496	fastq.gz	1.6 GB
EGAF50000095497	fastq.gz	5.3 GB
EGAF50000095498	fastq.gz	10.9 GB
EGAF50000095499	bam	1.3 GB
EGAF50000095500	fastq.gz	2.1 GB
EGAF50000095501	fastq.gz	39.9 GB
EGAF50000095502	fastq.gz	39.3 GB
EGAF50000095503	fastq.gz	125.8 GB
EGAF50000095504	bam	2.7 GB
EGAF50000095505	bam	507.8 MB
EGAF50000095506	bam	1.0 GB
EGAF50000095507	bam	1.3 GB
EGAF50000095508	bam	3.7 GB
EGAF50000095509	fastq.gz	2.0 GB
EGAF50000095510	fastq.gz	1.9 GB
EGAF50000095511	fastq.gz	1.9 GB
EGAF50000095512	fastq.gz	2.3 GB
EGAF50000095513	fastq.gz	2.4 GB
EGAF50000095514	fastq.gz	2.5 GB
EGAF50000095515	fastq.gz	1.7 GB
EGAF50000095516	fastq.gz	1.7 GB
EGAF50000095517	fastq.gz	1.7 GB
EGAF50000095518	fastq.gz	3.0 GB
EGAF50000095519	fastq.gz	3.0 GB
EGAF50000095520	fastq.gz	130.2 GB
EGAF50000095521	fastq.gz	129.4 GB
EGAF50000095522	fastq.gz	61.6 GB
EGAF50000095523	fastq.gz	1.1 GB
EGAF50000095524	bam	2.8 GB
EGAF50000095525	bam	3.0 GB
EGAF50000095526	bam	2.4 GB
EGAF50000095527	bam	16.6 kB
EGAF50000095528	bam	2.5 GB
EGAF50000095529	bam	1.1 GB
EGAF50000095530	bam	908.5 MB
EGAF50000095531	fastq.gz	922.0 MB
EGAF50000095532	fastq.gz	923.6 MB
EGAF50000095533	fastq.gz	1.9 GB
EGAF50000095534	fastq.gz	1.9 GB
EGAF50000095535	fastq.gz	1.6 GB
EGAF50000095536	fastq.gz	1.6 GB
EGAF50000095537	fastq.gz	974.6 MB
EGAF50000095538	fastq.gz	979.7 MB
EGAF50000095539	fastq.gz	1.0 GB
EGAF50000095540	fastq.gz	1.6 GB
EGAF50000095541	fastq.gz	1.9 GB
EGAF50000095542	fastq.gz	1.9 GB
EGAF50000095543	fastq.gz	691.5 MB
EGAF50000095544	fastq.gz	702.3 MB
EGAF50000095545	fastq.gz	1.2 GB
EGAF50000095546	fastq.gz	1.3 GB
EGAF50000095547	fastq.gz	2.0 GB
EGAF50000095548	fastq.gz	2.0 GB
EGAF50000095549	fastq.gz	869.3 MB
EGAF50000095550	fastq.gz	858.1 MB
EGAF50000095551	fastq.gz	2.6 GB
EGAF50000095552	fastq.gz	2.6 GB
EGAF50000095553	fastq.gz	3.0 GB
EGAF50000095554	fastq.gz	1.9 GB
EGAF50000095555	fastq.gz	1.9 GB
EGAF50000095556	fastq.gz	1.1 GB
EGAF50000095557	fastq.gz	1.1 GB
EGAF50000095558	fastq.gz	3.4 GB
EGAF50000095559	fastq.gz	1.2 GB
EGAF50000095560	fastq.gz	1.2 GB
EGAF50000095561	fastq.gz	1.2 GB
EGAF50000095562	fastq.gz	2.5 GB
EGAF50000095563	fastq.gz	664.7 MB
EGAF50000095564	fastq.gz	572.6 MB
EGAF50000095565	fastq.gz	566.8 MB
EGAF50000095566	fastq.gz	1.1 GB
EGAF50000095567	fastq.gz	1.1 GB
EGAF50000095568	fastq.gz	1.2 GB
EGAF50000095569	fastq.gz	1.2 GB
EGAF50000095570	fastq.gz	2.0 GB
EGAF50000095571	fastq.gz	2.0 GB
EGAF50000095572	fastq.gz	1.6 GB
EGAF50000095573	fastq.gz	1.6 GB
EGAF50000095574	fastq.gz	2.2 GB
EGAF50000095575	fastq.gz	2.2 GB
EGAF50000095576	fastq.gz	3.8 GB
EGAF50000095577	fastq.gz	637.7 MB
EGAF50000095578	fastq.gz	2.2 GB
EGAF50000095579	fastq.gz	2.2 GB
EGAF50000095580	fastq.gz	1.3 GB
EGAF50000095581	fastq.gz	1.1 GB
EGAF50000095582	fastq.gz	1.3 GB
EGAF50000095583	fastq.gz	1.1 GB
EGAF50000095584	fastq.gz	2.0 GB
EGAF50000095585	fastq.gz	2.0 GB
EGAF50000095586	fastq.gz	5.4 GB
EGAF50000095587	fastq.gz	796.8 MB
EGAF50000095588	fastq.gz	1.7 GB
EGAF50000095589	fastq.gz	1.3 GB
EGAF50000095590	fastq.gz	1.3 GB
EGAF50000095591	fastq.gz	1.1 GB
EGAF50000095592	fastq.gz	1.1 GB
EGAF50000095593	fastq.gz	1.2 GB
EGAF50000095594	fastq.gz	1.2 GB
EGAF50000095595	fastq.gz	8.2 GB
EGAF50000095596	fastq.gz	8.1 GB
EGAF50000095597	fastq.gz	1.7 GB
EGAF50000095598	fastq.gz	1.7 GB
EGAF50000095599	fastq.gz	1.7 GB
EGAF50000095600	fastq.gz	2.1 GB
EGAF50000095601	fastq.gz	3.1 GB
EGAF50000095602	fastq.gz	3.1 GB
EGAF50000095603	fastq.gz	2.9 GB
EGAF50000095604	fastq.gz	2.9 GB
EGAF50000095605	fastq.gz	1.3 GB
EGAF50000095606	fastq.gz	1.3 GB
EGAF50000095607	fastq.gz	1.4 GB
EGAF50000095608	fastq.gz	1.4 GB
EGAF50000095609	fastq.gz	2.2 GB
EGAF50000095610	fastq.gz	2.2 GB
EGAF50000095611	fastq.gz	2.6 GB
EGAF50000095612	fastq.gz	2.6 GB
EGAF50000095613	fastq.gz	3.5 GB
EGAF50000095614	fastq.gz	1.9 GB
EGAF50000095615	fastq.gz	1.8 GB
EGAF50000095616	fastq.gz	1.3 GB
EGAF50000095617	fastq.gz	1.3 GB
EGAF50000095618	fastq.gz	1.7 GB
EGAF50000095619	fastq.gz	1.7 GB
EGAF50000095620	fastq.gz	1.4 GB
EGAF50000095621	fastq.gz	1.4 GB
EGAF50000095622	fastq.gz	1.6 GB
EGAF50000095623	fastq.gz	1.6 GB
EGAF50000095624	fastq.gz	2.0 GB
EGAF50000095625	fastq.gz	4.6 GB
EGAF50000095626	fastq.gz	1.8 GB
EGAF50000095627	fastq.gz	1.4 GB
EGAF50000095628	fastq.gz	1.2 GB
EGAF50000095629	fastq.gz	1.2 GB
EGAF50000095630	fastq.gz	1.3 GB
EGAF50000095631	fastq.gz	1.4 GB
EGAF50000095632	fastq.gz	1.8 GB
EGAF50000095633	fastq.gz	1.1 GB
EGAF50000095634	fastq.gz	1.3 GB
EGAF50000095635	fastq.gz	1.4 GB
EGAF50000095636	fastq.gz	3.0 GB
EGAF50000095637	fastq.gz	3.0 GB
EGAF50000095638	fastq.gz	10.8 GB
EGAF50000095639	bam	1.6 GB
EGAF50000095640	bam	112.2 MB
EGAF50000095641	bam	2.5 GB
EGAF50000095642	bam	371.4 MB
EGAF50000095643	bam	1.6 GB
EGAF50000095644	bam	509.2 MB
EGAF50000095645	bam	90.9 MB
EGAF50000095646	bam	3.4 GB
EGAF50000095647	bam	2.3 GB
EGAF50000095648	bam	1.2 GB
EGAF50000095649	fastq.gz	1.4 GB
EGAF50000095650	fastq.gz	1.4 GB
EGAF50000095651	fastq.gz	5.5 GB
EGAF50000095652	fastq.gz	5.5 GB
EGAF50000095653	fastq.gz	1.4 GB
EGAF50000095654	fastq.gz	1.3 GB
EGAF50000095655	fastq.gz	2.8 GB
EGAF50000095656	fastq.gz	2.8 GB
EGAF50000095657	fastq.gz	5.4 GB
EGAF50000095658	fastq.gz	1.3 GB
EGAF50000095659	fastq.gz	2.0 GB
EGAF50000095660	fastq.gz	732.9 MB
EGAF50000095661	bam	528.9 MB
EGAF50000095662	bam	1.7 GB
EGAF50000095663	bam	256.0 MB
EGAF50000095664	bam	2.1 GB
EGAF50000095665	bam	2.1 GB
EGAF50000095666	bam	3.7 GB
EGAF50000095667	bam	4.0 GB
EGAF50000095668	bam	3.9 GB
EGAF50000095669	bam	4.7 GB
EGAF50000095670	bam	3.5 GB
EGAF50000095671	bam	3.6 GB
EGAF50000095672	bam	3.2 GB
EGAF50000095673	bam	2.2 GB
EGAF50000095674	bam	24.6 kB
EGAF50000095675	bam	4.4 GB
EGAF50000095676	fastq.gz	1.5 GB
EGAF50000095677	fastq.gz	1.5 GB
EGAF50000095678	fastq.gz	1.5 GB
EGAF50000095679	bam	3.6 GB
EGAF50000095680	bam	14.1 GB
EGAF50000095681	bam	5.8 GB
EGAF50000095682	bam	5.3 GB
EGAF50000095683	bam	5.7 GB
EGAF50000095684	fastq.gz	2.7 GB
EGAF50000095685	fastq.gz	2.8 GB
EGAF50000095686	fastq.gz	1.0 GB
EGAF50000095687	fastq.gz	1.3 GB
EGAF50000095688	bam	2.9 GB
EGAF50000095689	bam	3.0 GB
EGAF50000095690	bam	5.1 GB
EGAF50000095691	bam	5.0 GB
EGAF50000095692	bam	4.8 GB
EGAF50000095693	bam	5.0 GB
EGAF50000095694	bam	4.6 GB
EGAF50000095695	bam	4.3 GB
EGAF50000095696	bam	3.8 GB
EGAF50000095697	bam	4.8 GB
EGAF50000095698	bam	5.2 GB
EGAF50000095699	bam	3.9 GB
EGAF50000095700	bam	5.4 GB
EGAF50000095701	bam	4.5 GB
EGAF50000095702	bam	3.5 GB
EGAF50000095703	bam	4.0 GB
EGAF50000095704	bam	3.7 GB
EGAF50000095705	bam	4.9 GB
EGAF50000095706	bam	3.0 GB
EGAF50000095707	bam	4.4 GB
EGAF50000095708	bam	897.3 MB
EGAF50000095709	bam	131.5 MB
EGAF50000095710	bam	94.0 MB
EGAF50000095711	bam	208.0 MB
EGAF50000095712	fastq.gz	2.0 GB
EGAF50000095713	fastq.gz	2.0 GB
EGAF50000095714	fastq.gz	3.2 GB
EGAF50000095715	fastq.gz	3.2 GB
EGAF50000095716	fastq.gz	2.2 GB
EGAF50000095717	fastq.gz	2.2 GB
EGAF50000095718	fastq.gz	2.3 GB
EGAF50000095719	fastq.gz	2.3 GB
EGAF50000095720	fastq.gz	2.3 GB
EGAF50000095721	fastq.gz	2.4 GB
EGAF50000095722	fastq.gz	3.3 GB
EGAF50000095723	fastq.gz	3.3 GB
EGAF50000095724	fastq.gz	1.9 GB
EGAF50000095725	fastq.gz	1.9 GB
EGAF50000095726	fastq.gz	3.1 GB
EGAF50000095727	fastq.gz	3.2 GB
EGAF50000095728	fastq.gz	2.0 GB
EGAF50000095729	fastq.gz	2.0 GB
EGAF50000095730	fastq.gz	2.0 GB
EGAF50000095731	fastq.gz	2.0 GB
EGAF50000095732	fastq.gz	2.8 GB
EGAF50000095733	fastq.gz	2.8 GB
EGAF50000095734	fastq.gz	1.7 GB
EGAF50000095735	fastq.gz	130.5 GB
EGAF50000095736	fastq.gz	136.2 GB
EGAF50000095737	fastq.gz	143.1 GB
EGAF50000095738	fastq.gz	41.0 GB
EGAF50000095739	fastq.gz	132.2 GB
EGAF50000095740	fastq.gz	137.8 GB
EGAF50000095741	fastq.gz	142.2 GB
EGAF50000095742	fastq.gz	49.3 GB
EGAF50000095743	fastq.gz	143.2 GB
EGAF50000095744	fastq.gz	151.2 GB
EGAF50000095745	fastq.gz	59.2 GB
EGAF50000095746	fastq.gz	59.5 GB
EGAF50000095747	bam	3.2 GB
EGAF50000095748	bam	1.6 GB
EGAF50000095749	bam	4.1 GB
EGAF50000095750	bam	3.9 GB
EGAF50000095751	bam	3.6 GB
EGAF50000095752	bam	4.4 GB
EGAF50000095753	bam	961.4 MB
EGAF50000095754	bam	2.5 GB
EGAF50000095755	bam	5.3 GB
EGAF50000095756	bam	5.5 GB
EGAF50000095757	bam	4.9 GB
EGAF50000095758	bam	5.3 GB
EGAF50000095759	bam	3.0 GB
EGAF50000095760	bam	3.8 GB
EGAF50000095761	fastq.gz	120.3 GB
EGAF50000095762	fastq.gz	126.5 GB
EGAF50000095763	fastq.gz	55.7 GB
EGAF50000095764	fastq.gz	158.7 GB
EGAF50000095765	fastq.gz	2.3 GB
EGAF50000095766	fastq.gz	1.2 GB
EGAF50000095767	fastq.gz	3.5 GB
EGAF50000095768	fastq.gz	1.5 GB
EGAF50000095769	fastq.gz	1.8 GB
EGAF50000095770	fastq.gz	1.4 GB
EGAF50000095771	fastq.gz	1.5 GB
EGAF50000095772	fastq.gz	2.0 GB
EGAF50000095773	fastq.gz	1.9 GB
EGAF50000095774	fastq.gz	2.3 GB
EGAF50000095775	fastq.gz	1.2 GB
EGAF50000095776	fastq.gz	144.4 GB
EGAF50000095777	fastq.gz	151.4 GB
EGAF50000095778	bam	2.4 GB
EGAF50000095779	bam	3.6 GB
EGAF50000095780	bam	3.9 GB
EGAF50000095781	bam	2.5 GB
EGAF50000095782	fastq.gz	2.7 GB
EGAF50000095783	fastq.gz	2.7 GB
EGAF50000095784	bam	574.1 MB
EGAF50000095785	bam	851.7 MB
EGAF50000095786	fastq.gz	132.5 GB
EGAF50000095787	fastq.gz	143.3 GB
EGAF50000095788	fastq.gz	149.6 GB
EGAF50000095789	fastq.gz	65.4 GB
EGAF50000095790	fastq.gz	55.0 GB
EGAF50000095791	bam	1.3 GB
EGAF50000095792	bam	4.8 GB
EGAF50000095793	bam	1.8 GB
EGAF50000095794	fastq.gz	1.6 GB
EGAF50000095795	fastq.gz	4.6 GB
414 Files (6.6 TB)