About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Alpha synucleinopathy spectrum - bulk RNA seq of prefrontal cortex

Dataset corresponding to the bulk RNA seq dataset from prefrontal cortex for a total of N=44 samples. Tissue samples correspond to patients with different alpha synucleinopathies. Specifically, idiopathic Parkinson's disease (PD, N=20) monogenic PD caused by LRRK2 mutations (LRRK2-PD, N=7), multiple system atrophy (MSA, N=6) and neurologically healthy controls (N=11). RNA seq was carried out using ribosomal depletion. The totality of these samples were also sequenced using single nucleus RNA seq, and available within the same study as a separate dataset.

Request Access

DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000020
version: 2021-02-23

collaboration required

This data use modifier indicates that the requestor must agree to collaboration with the primary study investigator(s).

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

DUO:0000025
version: 2021-02-23

time limit on use

This data use modifier indicates that use is approved for a specific number of months.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

Haukeland University Hospital Data Access Policy for ParkOme-1: omics of Parkinson’s disease and related disorders datasets archived in Federated EGA Norway

1. Data Access Committee A Data Access Committee (DAC) is a body of one or more named individuals who are responsible for data release to external requesters based on consent and/or National Research Ethics terms. Each dataset submitted by Haukeland University Hospital for archival and controlled access sharing in Federated EGA Norway, has a DAC appointed by Haukeland University Hospital to govern controlled access to the dataset according to this Data Access Policy. Multiple datasets may be affiliated to a single DAC. Haukeland University Hospital as an institution has the overall data controller responsibility, and has appointed a DAC based on proper internal procedures that ensures involvement of institutional functions such as Data Protection Officer, legal control, etc. 2. Data use conditions To advise any would-be requester on how the data can be used, Data Use Ontology codes (DUO) is associated to each dataset, providing the requester more insights into which terms for sharing and use of the data that applies, and that needs to be addressed as part of the communication with the DAC in a data access request. No access to an Haukeland University Hospital dataset deposited in FEGA Norway can be granted to a requester before all applicable conditions and requirements for the use and management of the data have been agreed upon in a signed Data Access Agreement. 3. Data Access Agreement The Data Access Agreement (DAA) will include requirements specific for both the dataset and the management of the data in the hands of the requester applying for access, and will thus be an individual DAA for each case of granted access to a dataset. As a rule, a DAA for an Haukeland University Hospital dataset will take the form of a Data Transfer Agreement, where the requester will commit to take on responsibilities and duties as a data controller. 4. Processing of requests for access The overall data access approval process at Haukeland University Hospital can be summarized as follows: ● DAC for an Haukeland University Hospital dataset is contacted by a potential data requester ● DAC continues communication with requester to understand the purpose of use, i.e. research setting the dataset is envisioned for by requester, to identify if data sharing is possible directly under current conditions for the dataset, or actions such as re-consenting is needed and desirable to accommodate the proposed research setting/data use. ● A Data Access Agreement is jointly formulated and agreed upon, with the DAC following internal Haukeland University Hospital procedure to include the Data Protection Officer and Division for research support. ● When a completed DAA has been signed between the parties, and archived at Haukeland University Hospital, the DAC will instruct the FEGA Norway node to release the data to the requester.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000301 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000099437 fastq.gz 7.2 GB
Federated EGA
EGAF50000099438 fastq.gz 7.4 GB
Federated EGA
EGAF50000099439 fastq.gz 7.4 GB
Federated EGA
EGAF50000099440 fastq.gz 7.5 GB
Federated EGA
EGAF50000099441 fastq.gz 7.6 GB
Federated EGA
EGAF50000099442 fastq.gz 7.7 GB
Federated EGA
EGAF50000099443 fastq.gz 7.3 GB
Federated EGA
EGAF50000099444 fastq.gz 7.5 GB
Federated EGA
EGAF50000099445 fastq.gz 6.9 GB
Federated EGA
EGAF50000099446 fastq.gz 7.0 GB
Federated EGA
EGAF50000099447 fastq.gz 8.0 GB
Federated EGA
EGAF50000099448 fastq.gz 8.2 GB
Federated EGA
EGAF50000099449 fastq.gz 7.1 GB
Federated EGA
EGAF50000099450 fastq.gz 7.2 GB
Federated EGA
EGAF50000099451 fastq.gz 6.6 GB
Federated EGA
EGAF50000099452 fastq.gz 6.8 GB
Federated EGA
EGAF50000099453 fastq.gz 6.8 GB
Federated EGA
EGAF50000099454 fastq.gz 7.0 GB
Federated EGA
EGAF50000099455 fastq.gz 6.8 GB
Federated EGA
EGAF50000099456 fastq.gz 6.9 GB
Federated EGA
EGAF50000099457 fastq.gz 6.4 GB
Federated EGA
EGAF50000099458 fastq.gz 6.6 GB
Federated EGA
EGAF50000099459 fastq.gz 6.6 GB
Federated EGA
EGAF50000099460 fastq.gz 6.8 GB
Federated EGA
EGAF50000099461 fastq.gz 7.0 GB
Federated EGA
EGAF50000099462 fastq.gz 7.3 GB
Federated EGA
EGAF50000099463 fastq.gz 7.6 GB
Federated EGA
EGAF50000099464 fastq.gz 7.8 GB
Federated EGA
EGAF50000099465 fastq.gz 9.2 GB
Federated EGA
EGAF50000099466 fastq.gz 9.6 GB
Federated EGA
EGAF50000099467 fastq.gz 5.9 GB
Federated EGA
EGAF50000099468 fastq.gz 6.1 GB
Federated EGA
EGAF50000099469 fastq.gz 5.8 GB
Federated EGA
EGAF50000099470 fastq.gz 5.9 GB
Federated EGA
EGAF50000099471 fastq.gz 6.2 GB
Federated EGA
EGAF50000099472 fastq.gz 6.4 GB
Federated EGA
EGAF50000099473 fastq.gz 6.2 GB
Federated EGA
EGAF50000099474 fastq.gz 6.5 GB
Federated EGA
EGAF50000099475 fastq.gz 7.2 GB
Federated EGA
EGAF50000099476 fastq.gz 7.4 GB
Federated EGA
EGAF50000099477 fastq.gz 9.0 GB
Federated EGA
EGAF50000099478 fastq.gz 9.3 GB
Federated EGA
EGAF50000099479 fastq.gz 7.9 GB
Federated EGA
EGAF50000099480 fastq.gz 8.2 GB
Federated EGA
EGAF50000099785 fastq.gz 6.9 GB
Federated EGA
EGAF50000099786 fastq.gz 7.0 GB
Federated EGA
EGAF50000099787 fastq.gz 6.4 GB
Federated EGA
EGAF50000099788 fastq.gz 6.5 GB
Federated EGA
EGAF50000099789 fastq.gz 5.4 GB
Federated EGA
EGAF50000099790 fastq.gz 5.5 GB
Federated EGA
EGAF50000099791 fastq.gz 6.5 GB
Federated EGA
EGAF50000099792 fastq.gz 6.7 GB
Federated EGA
EGAF50000099793 fastq.gz 6.6 GB
Federated EGA
EGAF50000099794 fastq.gz 6.9 GB
Federated EGA
EGAF50000099795 fastq.gz 7.6 GB
Federated EGA
EGAF50000099796 fastq.gz 7.8 GB
Federated EGA
EGAF50000099797 fastq.gz 7.2 GB
Federated EGA
EGAF50000099798 fastq.gz 7.4 GB
Federated EGA
EGAF50000099799 fastq.gz 7.1 GB
Federated EGA
EGAF50000099800 fastq.gz 7.4 GB
Federated EGA
EGAF50000099801 fastq.gz 6.6 GB
Federated EGA
EGAF50000099802 fastq.gz 6.8 GB
Federated EGA
EGAF50000099803 fastq.gz 6.6 GB
Federated EGA
EGAF50000099804 fastq.gz 6.8 GB
Federated EGA
EGAF50000099805 fastq.gz 6.9 GB
Federated EGA
EGAF50000099806 fastq.gz 7.2 GB
Federated EGA
EGAF50000099807 fastq.gz 6.4 GB
Federated EGA
EGAF50000099808 fastq.gz 6.5 GB
Federated EGA
EGAF50000099809 fastq.gz 6.7 GB
Federated EGA
EGAF50000099810 fastq.gz 6.9 GB
Federated EGA
EGAF50000099811 fastq.gz 6.1 GB
Federated EGA
EGAF50000099812 fastq.gz 6.3 GB
Federated EGA
EGAF50000099813 fastq.gz 7.0 GB
Federated EGA
EGAF50000099814 fastq.gz 7.1 GB
Federated EGA
EGAF50000099815 fastq.gz 6.2 GB
Federated EGA
EGAF50000099816 fastq.gz 6.3 GB
Federated EGA
EGAF50000099817 fastq.gz 5.9 GB
Federated EGA
EGAF50000099818 fastq.gz 6.2 GB
Federated EGA
EGAF50000099819 fastq.gz 6.2 GB
Federated EGA
EGAF50000099820 fastq.gz 6.4 GB
Federated EGA
EGAF50000099821 fastq.gz 7.1 GB
Federated EGA
EGAF50000099822 fastq.gz 7.3 GB
Federated EGA
EGAF50000099823 fastq.gz 6.6 GB
Federated EGA
EGAF50000099824 fastq.gz 6.7 GB
Federated EGA
EGAF50000099825 fastq.gz 6.5 GB
Federated EGA
EGAF50000099826 fastq.gz 6.7 GB
Federated EGA
EGAF50000099827 fastq.gz 6.2 GB
Federated EGA
EGAF50000099828 fastq.gz 6.3 GB
Federated EGA
EGAF50000099979 xlsx 11.5 kB
Federated EGA
89 Files (610.6 GB)