About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Complex-I stratification of Parkinson's disease - single nucleus RNAseq

Single nucleus RNA seq dataset for CI stratification of Parkinson's disease Single nucleus RNA seq dataset of prefrontal cortex tissue from a total of N=18 samples. Tissue samples correspond to patients with idiopathic Parkison's disease (PD) with varying levels of Complex-I activity (N=12) and neurologically healthy controls (N=6). Single nucleus RNA seq was carried out using 10X Genomics Chromium. This dataset corresponds to a subset of the samples sequenced using conventional bulk tissue RNA seq and available within this Study as a separate Dataset.

Request Access

DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000020
version: 2021-02-23

collaboration required

This data use modifier indicates that the requestor must agree to collaboration with the primary study investigator(s).

DUO:0000021
version: 2021-02-23

ethics approval required

This data use modifier indicates that the requestor must provide documentation of local IRB/ERB approval.

DUO:0000025
version: 2021-02-23

time limit on use

This data use modifier indicates that use is approved for a specific number of months.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

DUO:0000028
version: 2021-02-23

institution specific restriction

This data use modifier indicates that use is limited to use within an approved institution.

Haukeland University Hospital Data Access Policy for ParkOme-1: omics of Parkinson’s disease and related disorders datasets archived in Federated EGA Norway

1. Data Access Committee A Data Access Committee (DAC) is a body of one or more named individuals who are responsible for data release to external requesters based on consent and/or National Research Ethics terms. Each dataset submitted by Haukeland University Hospital for archival and controlled access sharing in Federated EGA Norway, has a DAC appointed by Haukeland University Hospital to govern controlled access to the dataset according to this Data Access Policy. Multiple datasets may be affiliated to a single DAC. Haukeland University Hospital as an institution has the overall data controller responsibility, and has appointed a DAC based on proper internal procedures that ensures involvement of institutional functions such as Data Protection Officer, legal control, etc. 2. Data use conditions To advise any would-be requester on how the data can be used, Data Use Ontology codes (DUO) is associated to each dataset, providing the requester more insights into which terms for sharing and use of the data that applies, and that needs to be addressed as part of the communication with the DAC in a data access request. No access to an Haukeland University Hospital dataset deposited in FEGA Norway can be granted to a requester before all applicable conditions and requirements for the use and management of the data have been agreed upon in a signed Data Access Agreement. 3. Data Access Agreement The Data Access Agreement (DAA) will include requirements specific for both the dataset and the management of the data in the hands of the requester applying for access, and will thus be an individual DAA for each case of granted access to a dataset. As a rule, a DAA for an Haukeland University Hospital dataset will take the form of a Data Transfer Agreement, where the requester will commit to take on responsibilities and duties as a data controller. 4. Processing of requests for access The overall data access approval process at Haukeland University Hospital can be summarized as follows: ● DAC for an Haukeland University Hospital dataset is contacted by a potential data requester ● DAC continues communication with requester to understand the purpose of use, i.e. research setting the dataset is envisioned for by requester, to identify if data sharing is possible directly under current conditions for the dataset, or actions such as re-consenting is needed and desirable to accommodate the proposed research setting/data use. ● A Data Access Agreement is jointly formulated and agreed upon, with the DAC following internal Haukeland University Hospital procedure to include the Data Protection Officer and Division for research support. ● When a completed DAA has been signed between the parties, and archived at Haukeland University Hospital, the DAC will instruct the FEGA Norway node to release the data to the requester.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000301 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000091889 fastq.gz 2.0 GB
Federated EGA
EGAF50000091890 fastq.gz 2.4 GB
Federated EGA
EGAF50000091891 fastq.gz 32.3 GB
Federated EGA
EGAF50000091892 fastq.gz 24.3 GB
Federated EGA
EGAF50000091893 fastq.gz 33.3 MB
Federated EGA
EGAF50000091894 fastq.gz 38.3 MB
Federated EGA
EGAF50000091895 fastq.gz 346.2 MB
Federated EGA
EGAF50000091896 fastq.gz 327.7 MB
Federated EGA
EGAF50000091897 fastq.gz 1.7 GB
Federated EGA
EGAF50000091898 fastq.gz 1.9 GB
Federated EGA
EGAF50000091899 fastq.gz 28.4 GB
Federated EGA
EGAF50000091900 fastq.gz 22.8 GB
Federated EGA
EGAF50000095796 fastq.gz 1.6 GB
Federated EGA
EGAF50000095797 fastq.gz 1.8 GB
Federated EGA
EGAF50000099436 fastq.gz 174.0 MB
Federated EGA
EGAF50000099481 fastq.gz 53.3 MB
Federated EGA
EGAF50000099482 fastq.gz 156.6 MB
Federated EGA
EGAF50000099483 fastq.gz 484.0 MB
Federated EGA
EGAF50000099484 fastq.gz 520.5 MB
Federated EGA
EGAF50000099485 fastq.gz 55.9 MB
Federated EGA
EGAF50000099486 fastq.gz 20.9 GB
Federated EGA
EGAF50000099487 fastq.gz 1.8 GB
Federated EGA
EGAF50000099488 fastq.gz 1.8 GB
Federated EGA
EGAF50000099489 fastq.gz 26.4 GB
Federated EGA
EGAF50000099490 fastq.gz 1.9 GB
Federated EGA
EGAF50000099491 fastq.gz 1.9 GB
Federated EGA
EGAF50000099492 fastq.gz 23.7 GB
Federated EGA
EGAF50000099493 fastq.gz 30.0 GB
Federated EGA
EGAF50000099494 fastq.gz 1.8 GB
Federated EGA
EGAF50000099495 fastq.gz 2.0 GB
Federated EGA
EGAF50000099496 fastq.gz 28.5 GB
Federated EGA
EGAF50000099497 fastq.gz 22.6 GB
Federated EGA
EGAF50000099498 fastq.gz 2.1 GB
Federated EGA
EGAF50000099499 fastq.gz 2.1 GB
Federated EGA
EGAF50000099500 fastq.gz 31.2 GB
Federated EGA
EGAF50000099562 fastq.gz 24.8 GB
Federated EGA
EGAF50000099563 fastq.gz 2.3 GB
Federated EGA
EGAF50000099564 fastq.gz 2.5 GB
Federated EGA
EGAF50000099565 fastq.gz 37.3 GB
Federated EGA
EGAF50000099566 fastq.gz 30.0 GB
Federated EGA
EGAF50000099567 fastq.gz 231.0 MB
Federated EGA
EGAF50000099568 fastq.gz 264.2 MB
Federated EGA
EGAF50000099569 fastq.gz 2.6 GB
Federated EGA
EGAF50000099570 fastq.gz 2.5 GB
Federated EGA
EGAF50000099571 fastq.gz 1.7 GB
Federated EGA
EGAF50000099572 fastq.gz 1.9 GB
Federated EGA
EGAF50000099573 fastq.gz 26.1 GB
Federated EGA
EGAF50000099574 fastq.gz 20.9 GB
Federated EGA
EGAF50000099575 fastq.gz 26.2 GB
Federated EGA
EGAF50000099576 fastq.gz 2.0 GB
Federated EGA
EGAF50000099577 fastq.gz 2.3 GB
Federated EGA
EGAF50000099578 fastq.gz 32.6 GB
Federated EGA
EGAF50000099579 fastq.gz 26.0 GB
Federated EGA
EGAF50000099580 fastq.gz 20.9 GB
Federated EGA
EGAF50000099581 fastq.gz 1.7 GB
Federated EGA
EGAF50000099582 fastq.gz 1.7 GB
Federated EGA
EGAF50000099583 fastq.gz 94.7 MB
Federated EGA
EGAF50000099584 fastq.gz 115.6 MB
Federated EGA
EGAF50000099585 fastq.gz 1.0 GB
Federated EGA
EGAF50000099586 fastq.gz 956.0 MB
Federated EGA
EGAF50000099587 fastq.gz 1.6 GB
Federated EGA
EGAF50000099588 fastq.gz 2.0 GB
Federated EGA
EGAF50000099589 fastq.gz 27.7 GB
Federated EGA
EGAF50000099590 fastq.gz 22.2 GB
Federated EGA
EGAF50000099591 fastq.gz 2.0 GB
Federated EGA
EGAF50000099592 fastq.gz 2.0 GB
Federated EGA
EGAF50000099593 fastq.gz 30.2 GB
Federated EGA
EGAF50000099594 fastq.gz 24.9 GB
Federated EGA
EGAF50000099595 fastq.gz 23.7 GB
Federated EGA
EGAF50000099596 fastq.gz 1.9 GB
Federated EGA
EGAF50000099597 fastq.gz 1.9 GB
Federated EGA
EGAF50000099598 fastq.gz 29.3 GB
Federated EGA
EGAF50000099599 fastq.gz 2.4 GB
Federated EGA
EGAF50000099600 fastq.gz 2.1 GB
Federated EGA
EGAF50000099601 fastq.gz 27.2 GB
Federated EGA
EGAF50000099602 fastq.gz 34.9 GB
Federated EGA
EGAF50000099603 fastq.gz 374.3 MB
Federated EGA
EGAF50000099604 fastq.gz 407.8 MB
Federated EGA
EGAF50000099605 fastq.gz 4.5 GB
Federated EGA
EGAF50000099606 fastq.gz 4.2 GB
Federated EGA
EGAF50000099607 fastq.gz 1.4 GB
Federated EGA
EGAF50000099608 fastq.gz 1.7 GB
Federated EGA
EGAF50000099609 fastq.gz 23.9 GB
Federated EGA
EGAF50000099610 fastq.gz 19.2 GB
Federated EGA
EGAF50000099611 fastq.gz 21.8 GB
Federated EGA
EGAF50000099612 fastq.gz 1.6 GB
Federated EGA
EGAF50000099613 fastq.gz 1.8 GB
Federated EGA
EGAF50000099614 fastq.gz 26.4 GB
Federated EGA
EGAF50000099615 fastq.gz 87.4 MB
Federated EGA
EGAF50000099616 fastq.gz 98.1 MB
Federated EGA
EGAF50000099617 fastq.gz 891.3 MB
Federated EGA
EGAF50000099618 fastq.gz 863.0 MB
Federated EGA
EGAF50000099619 fastq.gz 23.5 MB
Federated EGA
EGAF50000099620 fastq.gz 27.1 MB
Federated EGA
EGAF50000099621 fastq.gz 231.4 MB
Federated EGA
EGAF50000099622 fastq.gz 222.0 MB
Federated EGA
EGAF50000099623 fastq.gz 1.8 GB
Federated EGA
EGAF50000099624 fastq.gz 2.1 GB
Federated EGA
EGAF50000099625 fastq.gz 27.6 GB
Federated EGA
EGAF50000099626 fastq.gz 22.5 GB
Federated EGA
EGAF50000099627 fastq.gz 2.1 GB
Federated EGA
EGAF50000099628 fastq.gz 2.2 GB
Federated EGA
EGAF50000099629 fastq.gz 33.3 GB
Federated EGA
EGAF50000099630 fastq.gz 27.4 GB
Federated EGA
EGAF50000099980 xlsx 13.2 kB
Federated EGA
105 Files (1.1 TB)