About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Bulk RNA-seq of human muscle-invasive bladder cancer tissue samples before and after platinum-based chemotherapy (Chelushkin, van Dorp, et al., 2024)

The current dataset represents bulk RNA-Seq gene expression profiling (with an exome library preparation kit) of muscle-invasive bladder cancer tissue samples obtained before and after platinum-based chemotherapy. 89 samples are pre-treatment transurethral resection of the bladder tumor (TUR-BT) tissue at diagnosis (baseline), 86 are post-treatment cystectomy tissue (resected tumor bulk), comprising 76 pairs of samples from the same patients. FASTQ files contain gene expression data.

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Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy

Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000309 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000100934 fastq.gz 878.4 MB Report
EGAF50000100935 fastq.gz 1.6 GB Report
EGAF50000100936 fastq.gz 840.9 MB Report
EGAF50000100937 fastq.gz 2.3 GB Report
EGAF50000100938 fastq.gz 852.8 MB Report
EGAF50000100939 fastq.gz 1.9 GB Report
EGAF50000100940 fastq.gz 807.6 MB Report
EGAF50000100941 fastq.gz 1.4 GB Report
EGAF50000100942 fastq.gz 1.7 GB Report
EGAF50000100943 fastq.gz 174.7 MB Report
EGAF50000100944 fastq.gz 1.9 GB Report
EGAF50000100945 fastq.gz 2.2 GB Report
EGAF50000100946 fastq.gz 1.6 GB Report
EGAF50000100947 fastq.gz 1.1 GB Report
EGAF50000100948 fastq.gz 1.2 GB Report
EGAF50000100949 fastq.gz 837.7 MB Report
EGAF50000100950 fastq.gz 2.0 GB Report
EGAF50000100951 fastq.gz 1.7 GB Report
EGAF50000100952 fastq.gz 1.5 GB Report
EGAF50000100953 fastq.gz 2.2 GB Report
EGAF50000100954 fastq.gz 1.5 GB Report
EGAF50000100955 fastq.gz 1.5 GB Report
EGAF50000100956 fastq.gz 1.1 GB Report
EGAF50000100957 fastq.gz 735.0 MB Report
EGAF50000100958 fastq.gz 1.1 GB Report
EGAF50000100959 fastq.gz 1.5 GB Report
EGAF50000100960 fastq.gz 1.5 GB Report
EGAF50000100961 fastq.gz 1.6 GB Report
EGAF50000100962 fastq.gz 774.5 MB Report
EGAF50000100963 fastq.gz 830.4 MB Report
EGAF50000100964 fastq.gz 1.2 GB Report
EGAF50000100965 fastq.gz 2.1 GB Report
EGAF50000100966 fastq.gz 2.0 GB Report
EGAF50000100967 fastq.gz 969.1 MB Report
EGAF50000100968 fastq.gz 1.3 GB Report
EGAF50000100969 fastq.gz 1.3 GB Report
EGAF50000100970 fastq.gz 934.6 MB Report
EGAF50000100971 fastq.gz 1.3 GB Report
EGAF50000100972 fastq.gz 763.6 MB Report
EGAF50000100973 fastq.gz 739.2 MB Report
EGAF50000100974 fastq.gz 1.2 GB Report
EGAF50000100975 fastq.gz 1.5 GB Report
EGAF50000100976 fastq.gz 780.1 MB Report
EGAF50000100977 fastq.gz 1.3 GB Report
EGAF50000100978 fastq.gz 1.3 GB Report
EGAF50000100979 fastq.gz 967.6 MB Report
EGAF50000100980 fastq.gz 1.3 GB Report
EGAF50000100981 fastq.gz 1.6 GB Report
EGAF50000100982 fastq.gz 961.6 MB Report
EGAF50000100983 fastq.gz 983.2 MB Report
EGAF50000100984 fastq.gz 1.5 GB Report
EGAF50000100985 fastq.gz 1.3 GB Report
EGAF50000100986 fastq.gz 696.1 MB Report
EGAF50000100987 fastq.gz 1.3 GB Report
EGAF50000100988 fastq.gz 1.6 GB Report
EGAF50000100989 fastq.gz 1.6 GB Report
EGAF50000100990 fastq.gz 1.7 GB Report
EGAF50000100991 fastq.gz 1.5 GB Report
EGAF50000100992 fastq.gz 1.1 GB Report
EGAF50000100993 fastq.gz 899.1 MB Report
EGAF50000100994 fastq.gz 2.0 GB Report
EGAF50000100995 fastq.gz 1.1 GB Report
EGAF50000100996 fastq.gz 1.9 GB Report
EGAF50000100997 fastq.gz 1.9 GB Report
EGAF50000100998 fastq.gz 1.2 GB Report
EGAF50000100999 fastq.gz 1.2 GB Report
EGAF50000101000 fastq.gz 758.2 MB Report
EGAF50000101001 fastq.gz 777.0 MB Report
EGAF50000101002 fastq.gz 1.1 GB Report
EGAF50000101003 fastq.gz 1.4 GB Report
EGAF50000101004 fastq.gz 1.1 GB Report
EGAF50000101005 fastq.gz 886.1 MB Report
EGAF50000101006 fastq.gz 1.0 GB Report
EGAF50000101007 fastq.gz 1.6 GB Report
EGAF50000101008 fastq.gz 1.8 GB Report
EGAF50000101009 fastq.gz 1.7 GB Report
EGAF50000101010 fastq.gz 1.1 GB Report
EGAF50000101011 fastq.gz 846.9 MB Report
EGAF50000101012 fastq.gz 1.1 GB Report
EGAF50000101013 fastq.gz 835.1 MB Report
EGAF50000101014 fastq.gz 1.2 GB Report
EGAF50000101015 fastq.gz 1.5 GB Report
EGAF50000101016 fastq.gz 1.4 GB Report
EGAF50000101017 fastq.gz 455.4 MB Report
EGAF50000101018 fastq.gz 447.7 MB Report
EGAF50000101019 fastq.gz 543.4 MB Report
EGAF50000101020 fastq.gz 534.8 MB Report
EGAF50000101021 fastq.gz 630.6 MB Report
EGAF50000101022 fastq.gz 644.3 MB Report
EGAF50000101023 fastq.gz 915.2 MB Report
EGAF50000101024 fastq.gz 936.1 MB Report
EGAF50000101025 fastq.gz 713.6 MB Report
EGAF50000101026 fastq.gz 705.8 MB Report
EGAF50000101027 fastq.gz 686.6 MB Report
EGAF50000101028 fastq.gz 696.6 MB Report
EGAF50000101029 fastq.gz 1.1 GB Report
EGAF50000101030 fastq.gz 1.0 GB Report
EGAF50000101031 fastq.gz 673.9 MB Report
EGAF50000101032 fastq.gz 684.5 MB Report
EGAF50000101033 fastq.gz 820.3 MB Report
EGAF50000101034 fastq.gz 839.3 MB Report
EGAF50000101035 fastq.gz 398.3 MB Report
EGAF50000101036 fastq.gz 385.1 MB Report
EGAF50000101037 fastq.gz 1.4 GB Report
EGAF50000101038 fastq.gz 1.4 GB Report
EGAF50000101039 fastq.gz 404.9 MB Report
EGAF50000101040 fastq.gz 396.8 MB Report
EGAF50000101041 fastq.gz 563.3 MB Report
EGAF50000101042 fastq.gz 555.0 MB Report
EGAF50000101043 fastq.gz 1.3 GB Report
EGAF50000101044 fastq.gz 1.3 GB Report
EGAF50000101045 fastq.gz 502.9 MB Report
EGAF50000101046 fastq.gz 512.0 MB Report
EGAF50000101047 fastq.gz 786.1 MB Report
EGAF50000101048 fastq.gz 773.8 MB Report
EGAF50000101049 fastq.gz 921.6 MB Report
EGAF50000101050 fastq.gz 937.6 MB Report
EGAF50000101051 fastq.gz 471.9 MB Report
EGAF50000101052 fastq.gz 467.5 MB Report
EGAF50000101053 fastq.gz 944.4 MB Report
EGAF50000101054 fastq.gz 930.1 MB Report
EGAF50000101055 fastq.gz 718.4 MB Report
EGAF50000101056 fastq.gz 733.9 MB Report
EGAF50000101057 fastq.gz 703.6 MB Report
EGAF50000101058 fastq.gz 711.6 MB Report
EGAF50000101059 fastq.gz 923.6 MB Report
EGAF50000101060 fastq.gz 942.7 MB Report
EGAF50000101061 fastq.gz 750.2 MB Report
EGAF50000101062 fastq.gz 762.5 MB Report
EGAF50000101063 fastq.gz 678.9 MB Report
EGAF50000101064 fastq.gz 689.2 MB Report
EGAF50000101065 fastq.gz 765.7 MB Report
EGAF50000101066 fastq.gz 779.3 MB
EGAF50000101067 fastq.gz 778.1 MB Report
EGAF50000101068 fastq.gz 791.3 MB Report
EGAF50000101069 fastq.gz 557.8 MB Report
EGAF50000101070 fastq.gz 567.0 MB Report
EGAF50000101071 fastq.gz 463.2 MB Report
EGAF50000101072 fastq.gz 457.3 MB
EGAF50000101073 fastq.gz 704.9 MB Report
EGAF50000101074 fastq.gz 717.6 MB Report
EGAF50000101075 fastq.gz 715.5 MB Report
EGAF50000101076 fastq.gz 727.0 MB Report
EGAF50000101077 fastq.gz 651.0 MB Report
EGAF50000101078 fastq.gz 662.8 MB Report
EGAF50000101079 fastq.gz 993.4 MB Report
EGAF50000101080 fastq.gz 1.0 GB Report
EGAF50000101081 fastq.gz 754.3 MB Report
EGAF50000101082 fastq.gz 763.9 MB Report
EGAF50000101083 fastq.gz 665.0 MB Report
EGAF50000101084 fastq.gz 673.3 MB Report
EGAF50000101085 fastq.gz 1.2 GB Report
EGAF50000101086 fastq.gz 819.6 MB Report
EGAF50000101087 fastq.gz 528.5 MB Report
EGAF50000101088 fastq.gz 2.6 GB Report
EGAF50000101089 fastq.gz 917.7 MB Report
EGAF50000101090 fastq.gz 342.9 MB Report
EGAF50000101091 fastq.gz 1.0 GB Report
EGAF50000101092 fastq.gz 1.7 GB Report
EGAF50000101093 fastq.gz 469.6 MB Report
EGAF50000101094 fastq.gz 1.6 GB Report
EGAF50000101095 fastq.gz 1.1 GB Report
EGAF50000101096 fastq.gz 918.8 MB Report
EGAF50000101097 fastq.gz 1.4 GB Report
EGAF50000101098 fastq.gz 1.3 GB Report
EGAF50000101099 fastq.gz 1.4 GB Report
EGAF50000101100 fastq.gz 2.5 GB Report
EGAF50000101101 fastq.gz 1.1 GB Report
EGAF50000101102 fastq.gz 2.0 GB Report
EGAF50000101103 fastq.gz 1.8 GB Report
EGAF50000101104 fastq.gz 522.1 MB Report
EGAF50000101105 fastq.gz 993.1 MB
EGAF50000101106 fastq.gz 1.3 GB Report
EGAF50000101107 fastq.gz 1.5 GB Report
EGAF50000101108 fastq.gz 1.8 GB Report
EGAF50000101109 fastq.gz 1.1 GB Report
EGAF50000101110 fastq.gz 2.0 GB Report
EGAF50000101111 fastq.gz 827.6 MB Report
EGAF50000101112 fastq.gz 972.5 MB Report
EGAF50000101113 fastq.gz 1.7 GB Report
EGAF50000101114 fastq.gz 1.5 GB Report
EGAF50000101115 fastq.gz 1.1 GB Report
EGAF50000101116 fastq.gz 920.0 MB Report
EGAF50000101117 fastq.gz 852.7 MB Report
EGAF50000101118 fastq.gz 743.0 MB Report
EGAF50000101119 fastq.gz 1.4 GB Report
EGAF50000101120 fastq.gz 1.2 GB Report
EGAF50000101121 fastq.gz 958.1 MB Report
EGAF50000101122 fastq.gz 1.4 GB Report
EGAF50000101123 fastq.gz 1.4 GB Report
EGAF50000101124 fastq.gz 1.0 GB Report
EGAF50000101125 fastq.gz 1.9 GB Report
EGAF50000101126 fastq.gz 1.3 GB Report
EGAF50000101127 fastq.gz 2.2 GB Report
EGAF50000101128 fastq.gz 1.3 GB Report
EGAF50000101129 fastq.gz 1.1 GB Report
EGAF50000101130 fastq.gz 1.9 GB Report
EGAF50000101131 fastq.gz 1.8 GB Report
EGAF50000101132 fastq.gz 1.7 GB Report
EGAF50000101133 fastq.gz 1.0 GB Report
EGAF50000101134 fastq.gz 1.1 GB Report
EGAF50000101135 fastq.gz 1.8 GB Report
EGAF50000101136 fastq.gz 843.1 MB Report
EGAF50000101137 fastq.gz 1.1 GB Report
EGAF50000101138 fastq.gz 1.0 GB Report
EGAF50000101139 fastq.gz 2.2 GB Report
EGAF50000101140 fastq.gz 1.0 GB Report
EGAF50000101141 fastq.gz 1.5 GB Report
EGAF50000101142 fastq.gz 1.8 GB Report
EGAF50000101143 fastq.gz 760.0 MB Report
210 Files (235.9 GB)