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Bulk RNA-seq of human muscle-invasive bladder cancer tissue samples before and after platinum-based chemotherapy (Chelushkin, van Dorp, et al., 2024)

The current dataset represents bulk RNA-Seq gene expression profiling (with an exome library preparation kit) of muscle-invasive bladder cancer tissue samples obtained before and after platinum-based chemotherapy. 89 samples are pre-treatment transurethral resection of the bladder tumor (TUR-BT) tissue at diagnosis (baseline), 86 are post-treatment cystectomy tissue (resected tumor bulk), comprising 76 pairs of samples from the same patients. FASTQ files contain gene expression data.

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Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy

Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000309 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000100934 fastq.gz 878.4 MB
EGAF50000100935 fastq.gz 1.6 GB
EGAF50000100936 fastq.gz 840.9 MB
EGAF50000100937 fastq.gz 2.3 GB
EGAF50000100938 fastq.gz 852.8 MB
EGAF50000100939 fastq.gz 1.9 GB
EGAF50000100940 fastq.gz 807.6 MB
EGAF50000100941 fastq.gz 1.4 GB
EGAF50000100942 fastq.gz 1.7 GB
EGAF50000100943 fastq.gz 174.7 MB
EGAF50000100944 fastq.gz 1.9 GB
EGAF50000100945 fastq.gz 2.2 GB
EGAF50000100946 fastq.gz 1.6 GB
EGAF50000100947 fastq.gz 1.1 GB
EGAF50000100948 fastq.gz 1.2 GB
EGAF50000100949 fastq.gz 837.7 MB
EGAF50000100950 fastq.gz 2.0 GB
EGAF50000100951 fastq.gz 1.7 GB
EGAF50000100952 fastq.gz 1.5 GB
EGAF50000100953 fastq.gz 2.2 GB
EGAF50000100954 fastq.gz 1.5 GB
EGAF50000100955 fastq.gz 1.5 GB
EGAF50000100956 fastq.gz 1.1 GB
EGAF50000100957 fastq.gz 735.0 MB
EGAF50000100958 fastq.gz 1.1 GB
EGAF50000100959 fastq.gz 1.5 GB
EGAF50000100960 fastq.gz 1.5 GB
EGAF50000100961 fastq.gz 1.6 GB
EGAF50000100962 fastq.gz 774.5 MB
EGAF50000100963 fastq.gz 830.4 MB
EGAF50000100964 fastq.gz 1.2 GB
EGAF50000100965 fastq.gz 2.1 GB
EGAF50000100966 fastq.gz 2.0 GB
EGAF50000100967 fastq.gz 969.1 MB
EGAF50000100968 fastq.gz 1.3 GB
EGAF50000100969 fastq.gz 1.3 GB
EGAF50000100970 fastq.gz 934.6 MB
EGAF50000100971 fastq.gz 1.3 GB
EGAF50000100972 fastq.gz 763.6 MB
EGAF50000100973 fastq.gz 739.2 MB
EGAF50000100974 fastq.gz 1.2 GB
EGAF50000100975 fastq.gz 1.5 GB
EGAF50000100976 fastq.gz 780.1 MB
EGAF50000100977 fastq.gz 1.3 GB
EGAF50000100978 fastq.gz 1.3 GB
EGAF50000100979 fastq.gz 967.6 MB
EGAF50000100980 fastq.gz 1.3 GB
EGAF50000100981 fastq.gz 1.6 GB
EGAF50000100982 fastq.gz 961.6 MB
EGAF50000100983 fastq.gz 983.2 MB
EGAF50000100984 fastq.gz 1.5 GB
EGAF50000100985 fastq.gz 1.3 GB
EGAF50000100986 fastq.gz 696.1 MB
EGAF50000100987 fastq.gz 1.3 GB
EGAF50000100988 fastq.gz 1.6 GB
EGAF50000100989 fastq.gz 1.6 GB
EGAF50000100990 fastq.gz 1.7 GB
EGAF50000100991 fastq.gz 1.5 GB
EGAF50000100992 fastq.gz 1.1 GB
EGAF50000100993 fastq.gz 899.1 MB
EGAF50000100994 fastq.gz 2.0 GB
EGAF50000100995 fastq.gz 1.1 GB
EGAF50000100996 fastq.gz 1.9 GB
EGAF50000100997 fastq.gz 1.9 GB
EGAF50000100998 fastq.gz 1.2 GB
EGAF50000100999 fastq.gz 1.2 GB
EGAF50000101000 fastq.gz 758.2 MB
EGAF50000101001 fastq.gz 777.0 MB
EGAF50000101002 fastq.gz 1.1 GB
EGAF50000101003 fastq.gz 1.4 GB
EGAF50000101004 fastq.gz 1.1 GB
EGAF50000101005 fastq.gz 886.1 MB
EGAF50000101006 fastq.gz 1.0 GB
EGAF50000101007 fastq.gz 1.6 GB
EGAF50000101008 fastq.gz 1.8 GB
EGAF50000101009 fastq.gz 1.7 GB
EGAF50000101010 fastq.gz 1.1 GB
EGAF50000101011 fastq.gz 846.9 MB
EGAF50000101012 fastq.gz 1.1 GB
EGAF50000101013 fastq.gz 835.1 MB
EGAF50000101014 fastq.gz 1.2 GB
EGAF50000101015 fastq.gz 1.5 GB
EGAF50000101016 fastq.gz 1.4 GB
EGAF50000101017 fastq.gz 455.4 MB
EGAF50000101018 fastq.gz 447.7 MB
EGAF50000101019 fastq.gz 543.4 MB
EGAF50000101020 fastq.gz 534.8 MB
EGAF50000101021 fastq.gz 630.6 MB
EGAF50000101022 fastq.gz 644.3 MB
EGAF50000101023 fastq.gz 915.2 MB
EGAF50000101024 fastq.gz 936.1 MB
EGAF50000101025 fastq.gz 713.6 MB
EGAF50000101026 fastq.gz 705.8 MB
EGAF50000101027 fastq.gz 686.6 MB
EGAF50000101028 fastq.gz 696.6 MB
EGAF50000101029 fastq.gz 1.1 GB
EGAF50000101030 fastq.gz 1.0 GB
EGAF50000101031 fastq.gz 673.9 MB
EGAF50000101032 fastq.gz 684.5 MB
EGAF50000101033 fastq.gz 820.3 MB
EGAF50000101034 fastq.gz 839.3 MB
EGAF50000101035 fastq.gz 398.3 MB
EGAF50000101036 fastq.gz 385.1 MB
EGAF50000101037 fastq.gz 1.4 GB
EGAF50000101038 fastq.gz 1.4 GB
EGAF50000101039 fastq.gz 404.9 MB
EGAF50000101040 fastq.gz 396.8 MB
EGAF50000101041 fastq.gz 563.3 MB
EGAF50000101042 fastq.gz 555.0 MB
EGAF50000101043 fastq.gz 1.3 GB
EGAF50000101044 fastq.gz 1.3 GB
EGAF50000101045 fastq.gz 502.9 MB
EGAF50000101046 fastq.gz 512.0 MB
EGAF50000101047 fastq.gz 786.1 MB
EGAF50000101048 fastq.gz 773.8 MB
EGAF50000101049 fastq.gz 921.6 MB
EGAF50000101050 fastq.gz 937.6 MB
EGAF50000101051 fastq.gz 471.9 MB
EGAF50000101052 fastq.gz 467.5 MB
EGAF50000101053 fastq.gz 944.4 MB
EGAF50000101054 fastq.gz 930.1 MB
EGAF50000101055 fastq.gz 718.4 MB
EGAF50000101056 fastq.gz 733.9 MB
EGAF50000101057 fastq.gz 703.6 MB
EGAF50000101058 fastq.gz 711.6 MB
EGAF50000101059 fastq.gz 923.6 MB
EGAF50000101060 fastq.gz 942.7 MB
EGAF50000101061 fastq.gz 750.2 MB
EGAF50000101062 fastq.gz 762.5 MB
EGAF50000101063 fastq.gz 678.9 MB
EGAF50000101064 fastq.gz 689.2 MB
EGAF50000101065 fastq.gz 765.7 MB
EGAF50000101066 fastq.gz 779.3 MB
EGAF50000101067 fastq.gz 778.1 MB
EGAF50000101068 fastq.gz 791.3 MB
EGAF50000101069 fastq.gz 557.8 MB
EGAF50000101070 fastq.gz 567.0 MB
EGAF50000101071 fastq.gz 463.2 MB
EGAF50000101072 fastq.gz 457.3 MB
EGAF50000101073 fastq.gz 704.9 MB
EGAF50000101074 fastq.gz 717.6 MB
EGAF50000101075 fastq.gz 715.5 MB
EGAF50000101076 fastq.gz 727.0 MB
EGAF50000101077 fastq.gz 651.0 MB
EGAF50000101078 fastq.gz 662.8 MB
EGAF50000101079 fastq.gz 993.4 MB
EGAF50000101080 fastq.gz 1.0 GB
EGAF50000101081 fastq.gz 754.3 MB
EGAF50000101082 fastq.gz 763.9 MB
EGAF50000101083 fastq.gz 665.0 MB
EGAF50000101084 fastq.gz 673.3 MB
EGAF50000101085 fastq.gz 1.2 GB
EGAF50000101086 fastq.gz 819.6 MB
EGAF50000101087 fastq.gz 528.5 MB
EGAF50000101088 fastq.gz 2.6 GB
EGAF50000101089 fastq.gz 917.7 MB
EGAF50000101090 fastq.gz 342.9 MB
EGAF50000101091 fastq.gz 1.0 GB
EGAF50000101092 fastq.gz 1.7 GB
EGAF50000101093 fastq.gz 469.6 MB
EGAF50000101094 fastq.gz 1.6 GB
EGAF50000101095 fastq.gz 1.1 GB
EGAF50000101096 fastq.gz 918.8 MB
EGAF50000101097 fastq.gz 1.4 GB
EGAF50000101098 fastq.gz 1.3 GB
EGAF50000101099 fastq.gz 1.4 GB
EGAF50000101100 fastq.gz 2.5 GB
EGAF50000101101 fastq.gz 1.1 GB
EGAF50000101102 fastq.gz 2.0 GB
EGAF50000101103 fastq.gz 1.8 GB
EGAF50000101104 fastq.gz 522.1 MB
EGAF50000101105 fastq.gz 993.1 MB
EGAF50000101106 fastq.gz 1.3 GB
EGAF50000101107 fastq.gz 1.5 GB
EGAF50000101108 fastq.gz 1.8 GB
EGAF50000101109 fastq.gz 1.1 GB
EGAF50000101110 fastq.gz 2.0 GB
EGAF50000101111 fastq.gz 827.6 MB
EGAF50000101112 fastq.gz 972.5 MB
EGAF50000101113 fastq.gz 1.7 GB
EGAF50000101114 fastq.gz 1.5 GB
EGAF50000101115 fastq.gz 1.1 GB
EGAF50000101116 fastq.gz 920.0 MB
EGAF50000101117 fastq.gz 852.7 MB
EGAF50000101118 fastq.gz 743.0 MB
EGAF50000101119 fastq.gz 1.4 GB
EGAF50000101120 fastq.gz 1.2 GB
EGAF50000101121 fastq.gz 958.1 MB
EGAF50000101122 fastq.gz 1.4 GB
EGAF50000101123 fastq.gz 1.4 GB
EGAF50000101124 fastq.gz 1.0 GB
EGAF50000101125 fastq.gz 1.9 GB
EGAF50000101126 fastq.gz 1.3 GB
EGAF50000101127 fastq.gz 2.2 GB
EGAF50000101128 fastq.gz 1.3 GB
EGAF50000101129 fastq.gz 1.1 GB
EGAF50000101130 fastq.gz 1.9 GB
EGAF50000101131 fastq.gz 1.8 GB
EGAF50000101132 fastq.gz 1.7 GB
EGAF50000101133 fastq.gz 1.0 GB
EGAF50000101134 fastq.gz 1.1 GB
EGAF50000101135 fastq.gz 1.8 GB
EGAF50000101136 fastq.gz 843.1 MB
EGAF50000101137 fastq.gz 1.1 GB
EGAF50000101138 fastq.gz 1.0 GB
EGAF50000101139 fastq.gz 2.2 GB
EGAF50000101140 fastq.gz 1.0 GB
EGAF50000101141 fastq.gz 1.5 GB
EGAF50000101142 fastq.gz 1.8 GB
EGAF50000101143 fastq.gz 760.0 MB
210 Files (235.9 GB)