Bulk RNA-seq of human muscle-invasive bladder cancer tissue samples before and after platinum-based chemotherapy (Chelushkin, van Dorp, et al., 2024)
The current dataset represents bulk RNA-Seq gene expression profiling (with an exome library preparation kit) of muscle-invasive bladder cancer tissue samples obtained before and after platinum-based chemotherapy. 89 samples are pre-treatment transurethral resection of the bladder tumor (TUR-BT) tissue at diagnosis (baseline), 86 are post-treatment cystectomy tissue (resected tumor bulk), comprising 76 pairs of samples from the same patients. FASTQ files contain gene expression data.
- 23/04/2024
- 175 samples
- DAC: EGAC50000000055
- Technologies: Illumina HiSeq 2500, Illumina NovaSeq 6000
Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy
Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000309 | RNASeq |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF50000100934 | fastq.gz | 878.4 MB | ||
| EGAF50000100935 | fastq.gz | 1.6 GB | ||
| EGAF50000100936 | fastq.gz | 840.9 MB | ||
| EGAF50000100937 | fastq.gz | 2.3 GB | ||
| EGAF50000100938 | fastq.gz | 852.8 MB | ||
| EGAF50000100939 | fastq.gz | 1.9 GB | ||
| EGAF50000100940 | fastq.gz | 807.6 MB | ||
| EGAF50000100941 | fastq.gz | 1.4 GB | ||
| EGAF50000100942 | fastq.gz | 1.7 GB | ||
| EGAF50000100943 | fastq.gz | 174.7 MB | ||
| EGAF50000100944 | fastq.gz | 1.9 GB | ||
| EGAF50000100945 | fastq.gz | 2.2 GB | ||
| EGAF50000100946 | fastq.gz | 1.6 GB | ||
| EGAF50000100947 | fastq.gz | 1.1 GB | ||
| EGAF50000100948 | fastq.gz | 1.2 GB | ||
| EGAF50000100949 | fastq.gz | 837.7 MB | ||
| EGAF50000100950 | fastq.gz | 2.0 GB | ||
| EGAF50000100951 | fastq.gz | 1.7 GB | ||
| EGAF50000100952 | fastq.gz | 1.5 GB | ||
| EGAF50000100953 | fastq.gz | 2.2 GB | ||
| EGAF50000100954 | fastq.gz | 1.5 GB | ||
| EGAF50000100955 | fastq.gz | 1.5 GB | ||
| EGAF50000100956 | fastq.gz | 1.1 GB | ||
| EGAF50000100957 | fastq.gz | 735.0 MB | ||
| EGAF50000100958 | fastq.gz | 1.1 GB | ||
| EGAF50000100959 | fastq.gz | 1.5 GB | ||
| EGAF50000100960 | fastq.gz | 1.5 GB | ||
| EGAF50000100961 | fastq.gz | 1.6 GB | ||
| EGAF50000100962 | fastq.gz | 774.5 MB | ||
| EGAF50000100963 | fastq.gz | 830.4 MB | ||
| EGAF50000100964 | fastq.gz | 1.2 GB | ||
| EGAF50000100965 | fastq.gz | 2.1 GB | ||
| EGAF50000100966 | fastq.gz | 2.0 GB | ||
| EGAF50000100967 | fastq.gz | 969.1 MB | ||
| EGAF50000100968 | fastq.gz | 1.3 GB | ||
| EGAF50000100969 | fastq.gz | 1.3 GB | ||
| EGAF50000100970 | fastq.gz | 934.6 MB | ||
| EGAF50000100971 | fastq.gz | 1.3 GB | ||
| EGAF50000100972 | fastq.gz | 763.6 MB | ||
| EGAF50000100973 | fastq.gz | 739.2 MB | ||
| EGAF50000100974 | fastq.gz | 1.2 GB | ||
| EGAF50000100975 | fastq.gz | 1.5 GB | ||
| EGAF50000100976 | fastq.gz | 780.1 MB | ||
| EGAF50000100977 | fastq.gz | 1.3 GB | ||
| EGAF50000100978 | fastq.gz | 1.3 GB | ||
| EGAF50000100979 | fastq.gz | 967.6 MB | ||
| EGAF50000100980 | fastq.gz | 1.3 GB | ||
| EGAF50000100981 | fastq.gz | 1.6 GB | ||
| EGAF50000100982 | fastq.gz | 961.6 MB | ||
| EGAF50000100983 | fastq.gz | 983.2 MB | ||
| EGAF50000100984 | fastq.gz | 1.5 GB | ||
| EGAF50000100985 | fastq.gz | 1.3 GB | ||
| EGAF50000100986 | fastq.gz | 696.1 MB | ||
| EGAF50000100987 | fastq.gz | 1.3 GB | ||
| EGAF50000100988 | fastq.gz | 1.6 GB | ||
| EGAF50000100989 | fastq.gz | 1.6 GB | ||
| EGAF50000100990 | fastq.gz | 1.7 GB | ||
| EGAF50000100991 | fastq.gz | 1.5 GB | ||
| EGAF50000100992 | fastq.gz | 1.1 GB | ||
| EGAF50000100993 | fastq.gz | 899.1 MB | ||
| EGAF50000100994 | fastq.gz | 2.0 GB | ||
| EGAF50000100995 | fastq.gz | 1.1 GB | ||
| EGAF50000100996 | fastq.gz | 1.9 GB | ||
| EGAF50000100997 | fastq.gz | 1.9 GB | ||
| EGAF50000100998 | fastq.gz | 1.2 GB | ||
| EGAF50000100999 | fastq.gz | 1.2 GB | ||
| EGAF50000101000 | fastq.gz | 758.2 MB | ||
| EGAF50000101001 | fastq.gz | 777.0 MB | ||
| EGAF50000101002 | fastq.gz | 1.1 GB | ||
| EGAF50000101003 | fastq.gz | 1.4 GB | ||
| EGAF50000101004 | fastq.gz | 1.1 GB | ||
| EGAF50000101005 | fastq.gz | 886.1 MB | ||
| EGAF50000101006 | fastq.gz | 1.0 GB | ||
| EGAF50000101007 | fastq.gz | 1.6 GB | ||
| EGAF50000101008 | fastq.gz | 1.8 GB | ||
| EGAF50000101009 | fastq.gz | 1.7 GB | ||
| EGAF50000101010 | fastq.gz | 1.1 GB | ||
| EGAF50000101011 | fastq.gz | 846.9 MB | ||
| EGAF50000101012 | fastq.gz | 1.1 GB | ||
| EGAF50000101013 | fastq.gz | 835.1 MB | ||
| EGAF50000101014 | fastq.gz | 1.2 GB | ||
| EGAF50000101015 | fastq.gz | 1.5 GB | ||
| EGAF50000101016 | fastq.gz | 1.4 GB | ||
| EGAF50000101017 | fastq.gz | 455.4 MB | ||
| EGAF50000101018 | fastq.gz | 447.7 MB | ||
| EGAF50000101019 | fastq.gz | 543.4 MB | ||
| EGAF50000101020 | fastq.gz | 534.8 MB | ||
| EGAF50000101021 | fastq.gz | 630.6 MB | ||
| EGAF50000101022 | fastq.gz | 644.3 MB | ||
| EGAF50000101023 | fastq.gz | 915.2 MB | ||
| EGAF50000101024 | fastq.gz | 936.1 MB | ||
| EGAF50000101025 | fastq.gz | 713.6 MB | ||
| EGAF50000101026 | fastq.gz | 705.8 MB | ||
| EGAF50000101027 | fastq.gz | 686.6 MB | ||
| EGAF50000101028 | fastq.gz | 696.6 MB | ||
| EGAF50000101029 | fastq.gz | 1.1 GB | ||
| EGAF50000101030 | fastq.gz | 1.0 GB | ||
| EGAF50000101031 | fastq.gz | 673.9 MB | ||
| EGAF50000101032 | fastq.gz | 684.5 MB | ||
| EGAF50000101033 | fastq.gz | 820.3 MB | ||
| EGAF50000101034 | fastq.gz | 839.3 MB | ||
| EGAF50000101035 | fastq.gz | 398.3 MB | ||
| EGAF50000101036 | fastq.gz | 385.1 MB | ||
| EGAF50000101037 | fastq.gz | 1.4 GB | ||
| EGAF50000101038 | fastq.gz | 1.4 GB | ||
| EGAF50000101039 | fastq.gz | 404.9 MB | ||
| EGAF50000101040 | fastq.gz | 396.8 MB | ||
| EGAF50000101041 | fastq.gz | 563.3 MB | ||
| EGAF50000101042 | fastq.gz | 555.0 MB | ||
| EGAF50000101043 | fastq.gz | 1.3 GB | ||
| EGAF50000101044 | fastq.gz | 1.3 GB | ||
| EGAF50000101045 | fastq.gz | 502.9 MB | ||
| EGAF50000101046 | fastq.gz | 512.0 MB | ||
| EGAF50000101047 | fastq.gz | 786.1 MB | ||
| EGAF50000101048 | fastq.gz | 773.8 MB | ||
| EGAF50000101049 | fastq.gz | 921.6 MB | ||
| EGAF50000101050 | fastq.gz | 937.6 MB | ||
| EGAF50000101051 | fastq.gz | 471.9 MB | ||
| EGAF50000101052 | fastq.gz | 467.5 MB | ||
| EGAF50000101053 | fastq.gz | 944.4 MB | ||
| EGAF50000101054 | fastq.gz | 930.1 MB | ||
| EGAF50000101055 | fastq.gz | 718.4 MB | ||
| EGAF50000101056 | fastq.gz | 733.9 MB | ||
| EGAF50000101057 | fastq.gz | 703.6 MB | ||
| EGAF50000101058 | fastq.gz | 711.6 MB | ||
| EGAF50000101059 | fastq.gz | 923.6 MB | ||
| EGAF50000101060 | fastq.gz | 942.7 MB | ||
| EGAF50000101061 | fastq.gz | 750.2 MB | ||
| EGAF50000101062 | fastq.gz | 762.5 MB | ||
| EGAF50000101063 | fastq.gz | 678.9 MB | ||
| EGAF50000101064 | fastq.gz | 689.2 MB | ||
| EGAF50000101065 | fastq.gz | 765.7 MB | ||
| EGAF50000101066 | fastq.gz | 779.3 MB | ||
| EGAF50000101067 | fastq.gz | 778.1 MB | ||
| EGAF50000101068 | fastq.gz | 791.3 MB | ||
| EGAF50000101069 | fastq.gz | 557.8 MB | ||
| EGAF50000101070 | fastq.gz | 567.0 MB | ||
| EGAF50000101071 | fastq.gz | 463.2 MB | ||
| EGAF50000101072 | fastq.gz | 457.3 MB | ||
| EGAF50000101073 | fastq.gz | 704.9 MB | ||
| EGAF50000101074 | fastq.gz | 717.6 MB | ||
| EGAF50000101075 | fastq.gz | 715.5 MB | ||
| EGAF50000101076 | fastq.gz | 727.0 MB | ||
| EGAF50000101077 | fastq.gz | 651.0 MB | ||
| EGAF50000101078 | fastq.gz | 662.8 MB | ||
| EGAF50000101079 | fastq.gz | 993.4 MB | ||
| EGAF50000101080 | fastq.gz | 1.0 GB | ||
| EGAF50000101081 | fastq.gz | 754.3 MB | ||
| EGAF50000101082 | fastq.gz | 763.9 MB | ||
| EGAF50000101083 | fastq.gz | 665.0 MB | ||
| EGAF50000101084 | fastq.gz | 673.3 MB | ||
| EGAF50000101085 | fastq.gz | 1.2 GB | ||
| EGAF50000101086 | fastq.gz | 819.6 MB | ||
| EGAF50000101087 | fastq.gz | 528.5 MB | ||
| EGAF50000101088 | fastq.gz | 2.6 GB | ||
| EGAF50000101089 | fastq.gz | 917.7 MB | ||
| EGAF50000101090 | fastq.gz | 342.9 MB | ||
| EGAF50000101091 | fastq.gz | 1.0 GB | ||
| EGAF50000101092 | fastq.gz | 1.7 GB | ||
| EGAF50000101093 | fastq.gz | 469.6 MB | ||
| EGAF50000101094 | fastq.gz | 1.6 GB | ||
| EGAF50000101095 | fastq.gz | 1.1 GB | ||
| EGAF50000101096 | fastq.gz | 918.8 MB | ||
| EGAF50000101097 | fastq.gz | 1.4 GB | ||
| EGAF50000101098 | fastq.gz | 1.3 GB | ||
| EGAF50000101099 | fastq.gz | 1.4 GB | ||
| EGAF50000101100 | fastq.gz | 2.5 GB | ||
| EGAF50000101101 | fastq.gz | 1.1 GB | ||
| EGAF50000101102 | fastq.gz | 2.0 GB | ||
| EGAF50000101103 | fastq.gz | 1.8 GB | ||
| EGAF50000101104 | fastq.gz | 522.1 MB | ||
| EGAF50000101105 | fastq.gz | 993.1 MB | ||
| EGAF50000101106 | fastq.gz | 1.3 GB | ||
| EGAF50000101107 | fastq.gz | 1.5 GB | ||
| EGAF50000101108 | fastq.gz | 1.8 GB | ||
| EGAF50000101109 | fastq.gz | 1.1 GB | ||
| EGAF50000101110 | fastq.gz | 2.0 GB | ||
| EGAF50000101111 | fastq.gz | 827.6 MB | ||
| EGAF50000101112 | fastq.gz | 972.5 MB | ||
| EGAF50000101113 | fastq.gz | 1.7 GB | ||
| EGAF50000101114 | fastq.gz | 1.5 GB | ||
| EGAF50000101115 | fastq.gz | 1.1 GB | ||
| EGAF50000101116 | fastq.gz | 920.0 MB | ||
| EGAF50000101117 | fastq.gz | 852.7 MB | ||
| EGAF50000101118 | fastq.gz | 743.0 MB | ||
| EGAF50000101119 | fastq.gz | 1.4 GB | ||
| EGAF50000101120 | fastq.gz | 1.2 GB | ||
| EGAF50000101121 | fastq.gz | 958.1 MB | ||
| EGAF50000101122 | fastq.gz | 1.4 GB | ||
| EGAF50000101123 | fastq.gz | 1.4 GB | ||
| EGAF50000101124 | fastq.gz | 1.0 GB | ||
| EGAF50000101125 | fastq.gz | 1.9 GB | ||
| EGAF50000101126 | fastq.gz | 1.3 GB | ||
| EGAF50000101127 | fastq.gz | 2.2 GB | ||
| EGAF50000101128 | fastq.gz | 1.3 GB | ||
| EGAF50000101129 | fastq.gz | 1.1 GB | ||
| EGAF50000101130 | fastq.gz | 1.9 GB | ||
| EGAF50000101131 | fastq.gz | 1.8 GB | ||
| EGAF50000101132 | fastq.gz | 1.7 GB | ||
| EGAF50000101133 | fastq.gz | 1.0 GB | ||
| EGAF50000101134 | fastq.gz | 1.1 GB | ||
| EGAF50000101135 | fastq.gz | 1.8 GB | ||
| EGAF50000101136 | fastq.gz | 843.1 MB | ||
| EGAF50000101137 | fastq.gz | 1.1 GB | ||
| EGAF50000101138 | fastq.gz | 1.0 GB | ||
| EGAF50000101139 | fastq.gz | 2.2 GB | ||
| EGAF50000101140 | fastq.gz | 1.0 GB | ||
| EGAF50000101141 | fastq.gz | 1.5 GB | ||
| EGAF50000101142 | fastq.gz | 1.8 GB | ||
| EGAF50000101143 | fastq.gz | 760.0 MB | ||
| 210 Files (235.9 GB) | ||||