WES of pleomorphic lung cancer
Pulmonary pleomorphic carcinoma (PPC) is an aggressive and highly heterogeneous non-small-cell lung carcinoma whose underlying biology is still poorly understood. Forty-two tumor areas including 39 primary tumors and 3 metastases from 20 PPC patients were microdissected and the histologically distinct components were subjected to whole exome sequencing (WES) separately. Twist Human Core Exome + RefSeq + Mito-Panel kit (Twist Bioscience) was used for the whole exome capturing according to manufacturer’s guidelines. Paired-end 100-bp reads were generated on the Illumina NovaSeq 6000. After the sequencing, reads were aligned against the reference human genome GRCh38 using Burrows-Wheeler Aligner (BWA, v0.7.12)
- 21/06/2024
- 62 samples
- DAC: EGAC00001002981
- Technology: Illumina NovaSeq 6000
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ATTENTION: Please check the following policy and the documents/information to provide in order to get access to the requested datasets. You can find the governing policy on Zenodo under the link: https://zenodo.org/records/12517622 Please provide all information as requested in the document to the MF-DAC. Additionally, you can find more information about the Data Access Committee of the Medical Faculty of the University of Basel (MF-DAC) under the following link on Zenodo: https://zenodo.org/records/10137776
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000314 | Exome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF50000103530 | bam | 15.9 GB | ||
| EGAF50000103531 | bam | 19.9 GB | ||
| EGAF50000103532 | bam | 40.9 GB | ||
| EGAF50000103533 | bam | 14.5 GB | ||
| EGAF50000103534 | bam | 23.2 GB | ||
| EGAF50000103535 | bam | 24.9 GB | ||
| EGAF50000103536 | bam | 16.1 GB | ||
| EGAF50000103537 | bam | 18.7 GB | ||
| EGAF50000103538 | bam | 16.4 GB | ||
| EGAF50000103539 | bam | 18.8 GB | ||
| EGAF50000103540 | bam | 13.9 GB | ||
| EGAF50000103541 | bam | 21.3 GB | ||
| EGAF50000103542 | bam | 16.6 GB | ||
| EGAF50000103543 | bam | 19.7 GB | ||
| EGAF50000103544 | bam | 8.5 GB | ||
| EGAF50000103545 | bam | 22.2 GB | ||
| EGAF50000103546 | bam | 15.1 GB | ||
| EGAF50000103547 | bam | 13.7 GB | ||
| EGAF50000103548 | bam | 22.2 GB | ||
| EGAF50000103549 | bam | 25.5 GB | ||
| EGAF50000103550 | bam | 31.4 GB | ||
| EGAF50000103551 | bam | 20.3 GB | ||
| EGAF50000103552 | bam | 18.2 GB | ||
| EGAF50000103553 | bam | 32.3 GB | ||
| EGAF50000103554 | bam | 14.6 GB | ||
| EGAF50000103555 | bam | 13.6 GB | ||
| EGAF50000103556 | bam | 26.2 GB | ||
| EGAF50000103557 | bam | 32.5 GB | ||
| EGAF50000103558 | bam | 20.7 GB | ||
| EGAF50000103559 | bam | 17.8 GB | ||
| EGAF50000103560 | bam | 19.1 GB | ||
| EGAF50000103561 | bam | 18.6 GB | ||
| EGAF50000103562 | bam | 40.0 GB | ||
| EGAF50000103563 | bam | 14.2 GB | ||
| EGAF50000103564 | bam | 18.8 GB | ||
| EGAF50000103565 | bam | 15.0 GB | ||
| EGAF50000103566 | bam | 9.9 GB | ||
| EGAF50000103567 | bam | 13.9 GB | ||
| EGAF50000103568 | bam | 19.1 GB | ||
| EGAF50000103569 | bam | 13.2 GB | ||
| EGAF50000103570 | bam | 26.1 GB | ||
| EGAF50000103571 | bam | 20.2 GB | ||
| EGAF50000103572 | bam | 16.9 GB | ||
| EGAF50000103573 | bam | 19.9 GB | ||
| EGAF50000103574 | bam | 23.6 GB | ||
| EGAF50000103575 | bam | 10.6 GB | ||
| EGAF50000103576 | bam | 23.6 GB | ||
| EGAF50000103577 | bam | 13.7 GB | ||
| EGAF50000103578 | bam | 28.5 GB | ||
| EGAF50000103579 | bam | 35.9 GB | ||
| EGAF50000103580 | bam | 16.6 GB | ||
| EGAF50000103581 | bam | 17.1 GB | ||
| EGAF50000103582 | bam | 18.6 GB | ||
| EGAF50000103583 | bam | 16.4 GB | ||
| EGAF50000103584 | bam | 15.3 GB | ||
| EGAF50000103585 | bam | 15.8 GB | ||
| EGAF50000103586 | bam | 15.5 GB | ||
| EGAF50000103587 | bam | 15.6 GB | ||
| EGAF50000103588 | bam | 12.2 GB | ||
| EGAF50000103589 | bam | 19.5 GB | ||
| EGAF50000103590 | bam | 12.9 GB | ||
| EGAF50000103591 | bam | 21.3 GB | ||
| EGAF50000103592 | xlsx | 1.4 MB | ||
| 63 Files (1.2 TB) | ||||