Need Help?

Systematic dissection of tumor-normal single-cell ecosystems across a thousand tumors of 30 cancer types

Raw bam file for bulk RNA-seq of checkpoint-blockade treated lung cancer cohorts

Request Access

This data includes exome sequencing of individuals, which are tightly regulated. Thus, in order to use this data, the user has to agree to only use data for purpose of project and only for research purposes. Also, the confidentiality of these data should be preserved at all times.

1. The User Institution agrees to only use these Data only for Research Purposes. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix II. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify DATA ACCESS COMMITTEE IN SAMSUNG MEDICAL CENTER(SMC) within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify DATA ACCESS COMMITTEE IN SAMSUNG MEDICAL CENTER(SMC) rior to any significant changes to the protocol for the Project. 14. The User Institution will notify DATA ACCESS COMMITTEE IN SAMSUNG MEDICAL CENTER(SMC) as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. DATA ACCESS COMMITTEE IN SAMSUNG MEDICAL CENTER(SMC) may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than DATA ACCESS COMMITTEE IN SAMSUNG MEDICAL CENTER(SMC) . In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. Appendix I File access: Data can be held in unencrypted files on an institutional compute system, with Unix user group read/write access for one or more appropriate groups but not Unix world read/write access behind a secure firewall. Laptops holding these data should have password protected logins and screenlocks (set to lock after 5 min of inactivity). If held on USB keys or other portable hard drives, the data must be encrypted. APPENDIX II – PUBLICATION POLICY DATA ACCESS COMMITTEE IN SAMSUNG MEDICAL CENTER(SMC) intend to publish the results of their analysis of this dataset and do not consider its deposition into public databases to be the equivalent of such publications. DATA ACCESS COMMITTEE IN SAMSUNG MEDICAL CENTER(SMC) anticipate that the dataset could be useful to other qualified researchers for a variety of purposes. However, some areas of work are subject to a publication moratorium. The publication moratorium covers any publications (including oral communications) that describe the use of the dataset. For research papers, submission for publication should not occur until 12 months after these data were first made available on the relevant hosting database, unless DATA ACCESS COMMITTEE IN SAMSUNG MEDICAL CENTER(SMC) has provided written consent to earlier submission. In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGAS00000000029), and acknowledge its use in a form agreed by the User Institution with DATA ACCESS COMMITTEE IN SAMSUNG MEDICAL CENTER(SMC) .

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000324 RNASeq
  • In compliance with institutional privacy regulations, the original fastq.gz sequencing files have been replaced to BAM files.
  • Dataset Released

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008556561 bam 2.4 GB
EGAF00008556562 bam 2.4 GB
EGAF00008556563 bam 2.2 GB
EGAF00008556564 bam 2.3 GB
EGAF00008556565 bam 2.1 GB
EGAF00008556566 bam 3.0 GB
EGAF00008556567 bam 2.4 GB
EGAF00008556568 bam 2.6 GB
EGAF00008556569 bam 1.9 GB
EGAF00008556570 bam 2.1 GB
EGAF00008556571 bam 2.8 GB
EGAF00008556572 bam 2.6 GB
EGAF00008556573 bam 1.9 GB
EGAF00008556574 bam 2.9 GB
EGAF00008556575 bam 2.2 GB
EGAF00008556576 bam 2.4 GB
EGAF00008556577 bam 2.3 GB
EGAF00008556578 bam 2.6 GB
EGAF00008556579 bam 2.4 GB
EGAF00008556580 bam 3.4 GB
EGAF00008556581 bam 3.1 GB
EGAF00008556582 bam 2.3 GB
EGAF00008556583 bam 2.0 GB
EGAF00008556584 bam 1.8 GB
EGAF00008556585 bam 2.9 GB
EGAF00008556586 bam 2.4 GB
EGAF00008556587 bam 3.0 GB
EGAF00008556588 bam 1.7 GB
EGAF00008556589 bam 1.0 GB
EGAF00008556590 bam 1.5 GB
EGAF00008556591 bam 2.1 GB
EGAF00008556592 bam 2.7 GB
EGAF00008556593 bam 2.0 GB
EGAF00008556594 bam 2.3 GB
EGAF00008556595 bam 1.4 GB
EGAF00008556596 bam 3.0 GB
EGAF00008556597 bam 2.9 GB
EGAF00008556598 bam 1.9 GB
EGAF00008556599 bam 2.4 GB
EGAF00008556600 bam 2.3 GB
EGAF00008556601 bam 1.7 GB
EGAF00008556602 bam 1.7 GB
EGAF00008556603 bam 3.2 GB
EGAF00008556604 bam 2.0 GB
EGAF00008556605 bam 2.5 GB
EGAF00008556606 bam 2.3 GB
EGAF00008556607 bam 1.5 GB
EGAF00008556608 bam 3.4 GB
EGAF00008556609 bam 2.7 GB
EGAF00008556610 bam 1.8 GB
EGAF00008556611 bam 2.0 GB
EGAF00008556612 bam 2.6 GB
EGAF00008556613 bam 2.9 GB
EGAF00008556614 bam 2.1 GB
EGAF00008556615 bam 1.7 GB
EGAF00008556616 bam 2.2 GB
EGAF00008556617 bam 2.3 GB
EGAF00008556618 bam 2.7 GB
EGAF00008556619 bam 2.3 GB
EGAF00008556620 bam 1.6 GB
EGAF00008556621 bam 2.7 GB
EGAF00008556622 bam 2.1 GB
EGAF00008556623 bam 2.2 GB
EGAF00008556624 bam 2.2 GB
EGAF00008556625 bam 2.8 GB
EGAF00008556626 bam 2.5 GB
EGAF00008556627 bam 2.0 GB
EGAF00008556628 bam 3.2 GB
EGAF00008556629 bam 1.8 GB
EGAF00008556630 bam 2.5 GB
EGAF00008556631 bam 2.3 GB
EGAF00008556632 bam 3.2 GB
EGAF00008556633 bam 2.5 GB
EGAF00008556634 bam 2.4 GB
EGAF00008556635 bam 2.2 GB
EGAF00008556636 bam 2.2 GB
EGAF00008556637 bam 989.4 MB
EGAF00008556638 bam 2.2 GB
EGAF00008556639 bam 2.2 GB
EGAF00008556640 bam 1.9 GB
EGAF00008556641 bam 2.3 GB
EGAF00008556642 bam 1.4 GB
EGAF00008556643 bam 2.0 GB
EGAF00008556644 bam 2.6 GB
EGAF00008556645 bam 1.9 GB
EGAF00008556646 bam 2.6 GB
EGAF00008556647 bam 2.2 GB
EGAF00008556648 bam 1.9 GB
EGAF00008556649 bam 2.8 GB
EGAF00008556650 bam 2.4 GB
EGAF00008556651 bam 2.2 GB
EGAF00008556652 bam 2.6 GB
EGAF00008556653 bam 3.3 GB
EGAF00008556654 bam 2.2 GB
EGAF00008556655 bam 2.3 GB
EGAF00008556656 bam 2.3 GB
EGAF00008556657 bam 3.2 GB
EGAF00008556658 bam 2.9 GB
EGAF00008556659 bam 2.2 GB
EGAF00008556660 bam 2.2 GB
EGAF00008556661 bam 2.2 GB
EGAF00008556662 bam 2.7 GB
EGAF00008556663 bam 1.9 GB
EGAF00008556664 bam 2.3 GB
EGAF00008556665 bam 2.3 GB
EGAF00008556666 bam 2.9 GB
EGAF00008556667 bam 2.5 GB
EGAF00008556668 bam 2.8 GB
EGAF00008556669 bam 2.4 GB
EGAF00008556670 bam 3.4 GB
EGAF00008556671 bam 3.2 GB
EGAF00008556672 bam 1.9 GB
EGAF00008556673 bam 2.8 GB
EGAF00008556674 bam 2.3 GB
EGAF00008556675 bam 3.1 GB
EGAF00008556676 bam 2.7 GB
EGAF00008556677 bam 3.0 GB
EGAF00008556678 bam 2.8 GB
EGAF00008556679 bam 1.9 GB
EGAF00008556680 bam 2.2 GB
EGAF00008556681 bam 2.9 GB
EGAF00008556682 bam 3.4 GB
EGAF00008556683 bam 2.6 GB
EGAF00008556684 bam 2.6 GB
EGAF00008556685 bam 2.4 GB
EGAF00008556686 bam 2.7 GB
EGAF00008556687 bam 3.7 GB
EGAF00008556688 bam 2.2 GB
EGAF00008556689 bam 2.5 GB
EGAF00008556690 bam 1.8 GB
EGAF00008556691 bam 2.5 GB
EGAF00008556692 bam 3.4 GB
EGAF00008556693 bam 759.4 MB
EGAF00008556694 bam 2.9 GB
EGAF00008556695 bam 2.3 GB
EGAF00008556696 bam 1.2 GB
EGAF00008556697 bam 2.6 GB
EGAF00008556698 bam 2.8 GB
EGAF00008556699 bam 2.0 GB
EGAF00008556700 bam 4.3 GB
EGAF00008556701 bam 1.7 GB
EGAF00008556702 bam 3.2 GB
EGAF00008556703 bam 2.4 GB
EGAF00008556704 bam 2.7 GB
EGAF00008556705 bam 2.5 GB
EGAF00008556706 bam 4.9 GB
EGAF00008556707 bam 3.0 GB
EGAF00008556708 bam 4.8 GB
EGAF00008556709 bam 3.6 GB
EGAF00008556710 bam 3.2 GB
EGAF00008556711 bam 3.9 GB
EGAF00008556712 bam 3.4 GB
EGAF00008556713 bam 2.4 GB
EGAF00008556714 bam 2.8 GB
EGAF00008556715 bam 4.5 GB
EGAF00008556716 bam 2.2 GB
EGAF00008556717 bam 2.7 GB
EGAF00008556718 bam 3.2 GB
EGAF00008556719 bam 5.2 GB
EGAF00008556720 bam 3.0 GB
EGAF00008556721 bam 2.6 GB
EGAF00008556722 bam 3.8 GB
EGAF00008556723 bam 2.4 GB
EGAF00008556724 bam 3.7 GB
EGAF00008556725 bam 2.6 GB
EGAF00008556726 bam 3.7 GB
EGAF00008556727 bam 3.7 GB
EGAF00008556728 bam 1.8 GB
EGAF00008556729 bam 2.3 GB
EGAF00008556730 bam 3.2 GB
EGAF00008556731 bam 3.8 GB
EGAF00008556732 bam 2.6 GB
EGAF00008556733 bam 2.5 GB
EGAF00008556734 bam 2.7 GB
EGAF00008556735 bam 2.0 GB
EGAF00008556736 bam 5.6 GB
EGAF00008556737 bam 2.4 GB
EGAF00008556738 bam 2.5 GB
EGAF00008556739 bam 1.9 GB
EGAF00008556740 bam 2.0 GB
EGAF00008556741 bam 3.3 GB
EGAF00008556742 bam 4.8 GB
EGAF00008556743 bam 2.7 GB
EGAF00008556744 bam 3.1 GB
EGAF00008556745 bam 2.9 GB
EGAF00008556746 bam 4.8 GB
EGAF00008556747 bam 2.7 GB
EGAF00008556748 bam 3.2 GB
EGAF00008556749 bam 1.8 GB
EGAF00008556750 bam 4.8 GB
EGAF00008556751 bam 2.6 GB
EGAF00008556752 bam 3.3 GB
EGAF00008556753 bam 6.6 GB
EGAF00008556754 bam 3.0 GB
EGAF00008556755 bam 2.9 GB
EGAF00008556756 bam 4.9 GB
EGAF00008556757 bam 3.0 GB
EGAF00008556758 bam 2.4 GB
EGAF00008556759 bam 5.1 GB
EGAF00008556760 bam 2.3 GB
EGAF00008556761 bam 3.7 GB
EGAF00008556762 bam 3.7 GB
EGAF00008556763 bam 2.6 GB
EGAF00008556764 bam 4.6 GB
EGAF00008556765 bam 2.9 GB
EGAF00008556766 bam 2.4 GB
EGAF00008556767 bam 2.5 GB
EGAF00008556768 bam 2.5 GB
EGAF00008556769 bam 2.4 GB
EGAF00008556770 bam 2.8 GB
EGAF00008556771 bam 4.2 GB
EGAF00008556772 bam 3.3 GB
EGAF00008556773 bam 4.9 GB
EGAF00008556774 bam 2.0 GB
EGAF00008556775 bam 4.0 GB
EGAF00008556776 bam 2.6 GB
EGAF00008556777 bam 2.9 GB
EGAF00008556778 bam 5.1 GB
EGAF00008556779 bam 3.3 GB
EGAF00008556780 bam 4.0 GB
EGAF00008556781 bam 2.6 GB
EGAF00008556782 bam 2.8 GB
EGAF00008556783 bam 2.1 GB
EGAF00008556784 bam 4.7 GB
EGAF00008556785 bam 4.4 GB
EGAF00008556786 bam 3.4 GB
EGAF00008556787 bam 3.6 GB
EGAF00008556788 bam 4.6 GB
EGAF00008556789 bam 2.7 GB
EGAF00008556790 bam 6.3 GB
EGAF00008556791 bam 2.1 GB
EGAF00008556792 bam 3.4 GB
EGAF00008556793 bam 1.6 GB
EGAF00008556794 bam 2.1 GB
EGAF00008556795 bam 3.4 GB
EGAF00008556796 bam 3.7 GB
EGAF00008556797 bam 2.9 GB
EGAF00008556798 bam 2.4 GB
EGAF00008556799 bam 2.7 GB
EGAF00008556800 bam 3.4 GB
EGAF00008556801 bam 5.1 GB
EGAF00008556802 bam 2.0 GB
EGAF00008556803 bam 4.8 GB
EGAF00008556804 bam 2.4 GB
EGAF00008556805 bam 5.3 GB
EGAF00008556806 bam 2.3 GB
EGAF00008556807 bam 2.3 GB
EGAF00008556808 bam 2.8 GB
EGAF00008556809 bam 2.1 GB
EGAF00008556810 bam 4.5 GB
EGAF00008556811 bam 5.2 GB
EGAF00008556812 bam 2.8 GB
EGAF00008556813 bam 2.2 GB
EGAF00008556814 bam 2.8 GB
EGAF00008556815 bam 3.1 GB
EGAF00008556816 bam 7.5 GB
EGAF00008556817 bam 2.2 GB
EGAF00008556818 bam 1.5 GB
EGAF00008556819 bam 2.1 GB
EGAF00008556820 bam 4.3 GB
EGAF00008556821 bam 3.2 GB
EGAF00008556822 bam 3.2 GB
EGAF00008556823 bam 3.0 GB
EGAF00008556824 bam 8.0 GB
EGAF00008556825 bam 2.2 GB
EGAF00008556826 bam 3.0 GB
EGAF00008556827 bam 6.0 GB
EGAF00008556828 bam 3.0 GB
EGAF00008556829 bam 2.8 GB
EGAF00008556830 bam 2.5 GB
EGAF00008556831 bam 2.3 GB
EGAF00008556832 bam 2.4 GB
EGAF00008556833 bam 2.9 GB
EGAF00008556835 bam 4.3 GB
EGAF00008556836 bam 2.6 GB
EGAF00008556837 bam 3.0 GB
EGAF00008556838 bam 2.5 GB
EGAF00008556839 bam 2.9 GB
EGAF00008556840 bam 3.3 GB
EGAF00008556841 bam 2.5 GB
EGAF00008556842 bam 2.6 GB
EGAF00008556843 bam 2.2 GB
EGAF00008556844 bam 3.3 GB
EGAF00008556845 bam 2.9 GB
EGAF00008556846 bam 3.1 GB
EGAF00008556847 bam 2.9 GB
EGAF00008556848 bam 2.8 GB
EGAF00008556849 bam 3.0 GB
EGAF00008556850 bam 881.6 MB
EGAF00008556851 bam 3.6 GB
EGAF00008556852 bam 2.3 GB
EGAF00008556853 bam 3.1 GB
EGAF00008556854 bam 2.8 GB
EGAF00008556855 bam 2.5 GB
EGAF00008556856 bam 3.3 GB
EGAF00008556857 bam 3.2 GB
EGAF00008556858 bam 3.2 GB
EGAF00008556859 bam 2.3 GB
EGAF00008556860 bam 3.1 GB
EGAF00008556861 bam 2.5 GB
EGAF00008556862 bam 2.8 GB
EGAF00008556863 bam 4.5 GB
EGAF00008556864 bam 2.1 GB
EGAF00008556865 bam 1.5 GB
EGAF00008556866 bam 3.8 GB
EGAF00008556867 bam 3.1 GB
EGAF00008556868 bam 3.1 GB
EGAF00008556869 bam 3.0 GB
EGAF00008556870 bam 3.4 GB
EGAF00008556871 bam 2.7 GB
EGAF00008556872 bam 2.1 GB
EGAF00008556873 bam 3.6 GB
EGAF00008556874 bam 3.3 GB
EGAF00008556875 bam 4.0 GB
EGAF00008556876 bam 3.2 GB
EGAF00008556877 bam 3.8 GB
EGAF00008556878 bam 2.8 GB
EGAF00008556879 bam 3.2 GB
EGAF00008556880 bam 5.0 GB
EGAF00008556881 bam 3.3 GB
EGAF00008556882 bam 5.4 GB
EGAF00008556883 bam 2.8 GB
EGAF00008556884 bam 3.2 GB
EGAF00008556885 bam 3.3 GB
EGAF00008556886 bam 2.5 GB
EGAF00008556887 bam 3.1 GB
EGAF00008556888 bam 3.1 GB
EGAF00008556889 bam 2.7 GB
EGAF00008556890 bam 1.7 GB
EGAF00008556891 bam 2.1 GB
EGAF00008556892 bam 2.7 GB
EGAF00008556893 bam 2.7 GB
EGAF00008556895 bam 2.2 GB
EGAF00008556896 bam 2.5 GB
EGAF00008556897 bam 2.5 GB
EGAF00008556898 bam 2.5 GB
EGAF00008556899 bam 2.5 GB
EGAF00008556900 bam 2.9 GB
EGAF00008556901 bam 2.5 GB
EGAF00008556902 bam 3.0 GB
EGAF00008556903 bam 2.3 GB
EGAF00008556904 bam 3.8 GB
EGAF00008556905 bam 2.2 GB
EGAF00008556906 bam 2.6 GB
EGAF00008556907 bam 3.0 GB
EGAF00008556908 bam 2.7 GB
EGAF00008556909 bam 2.6 GB
EGAF00008556910 bam 2.6 GB
EGAF00008556911 bam 2.6 GB
EGAF00008556912 bam 2.3 GB
EGAF00008556913 bam 2.2 GB
EGAF00008556914 bam 3.3 GB
EGAF00008556915 bam 3.0 GB
EGAF00008556916 bam 2.4 GB
EGAF00008556917 bam 3.7 GB
355 Files (1.0 TB)