Datasets of bulk beta-chain TCRseq anaysis from: "T cell repertorie analysis fom a Spanish cohort of mild and severe cases of COVID-19 recovered patients"
The cohort included 98 mild and 75 severe cases with a median age of 53 years. We amplified and sequenced the T Cell Receptor (TCR β) chain complementary determining region 3 (CDR3b) and performed bioinformatic analyses to assess repertoire diversity, clonality, allelic usage, and epitope affinity CDR3b clustering. CDR3b sequences were amplified by multiplex PCR and sequenced by Illumina. The resulting raw files were processed for clonotype assembly, filtering for coding clonotypes, removal of non-TRB alleles, and downsampling.
- 08/05/2024
- 173 samples
- DAC: EGAC00001003090
- Technology: NextSeq 500
DAA for the group formed in 'DAC for the study molecular biomarkers associated with the diagnosis and severity of genetic diseases
At the time of requesting access to the data deposited by this DAC, the project in which the researcher will use these data must, without exception, be funded and therefore must be approved by the corresponding Ethics Committee (CE), for studies involving human participants.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000331 | Transcriptome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF50000107292 | tsv.gz | 3.1 MB | ||
| EGAF50000107293 | tsv.gz | 1.9 MB | ||
| EGAF50000107294 | tsv.gz | 3.4 MB | ||
| EGAF50000107295 | tsv.gz | 3.0 MB | ||
| EGAF50000107296 | tsv.gz | 2.3 MB | ||
| EGAF50000107297 | tsv.gz | 3.6 MB | ||
| EGAF50000107298 | tsv.gz | 2.8 MB | ||
| EGAF50000107299 | tsv.gz | 1.8 MB | ||
| EGAF50000107300 | tsv.gz | 4.3 MB | ||
| EGAF50000107301 | tsv.gz | 2.7 MB | ||
| EGAF50000107302 | tsv.gz | 3.3 MB | ||
| EGAF50000107303 | tsv.gz | 1.5 MB | ||
| EGAF50000107304 | tsv.gz | 3.5 MB | ||
| EGAF50000107305 | tsv.gz | 2.8 MB | ||
| EGAF50000107306 | tsv.gz | 4.0 MB | ||
| EGAF50000107307 | tsv.gz | 4.0 MB | ||
| EGAF50000107308 | tsv.gz | 4.1 MB | ||
| EGAF50000107309 | tsv.gz | 1.6 MB | ||
| EGAF50000107310 | tsv.gz | 3.1 MB | ||
| EGAF50000107311 | tsv.gz | 3.3 MB | ||
| EGAF50000107312 | tsv.gz | 3.2 MB | ||
| EGAF50000107313 | tsv.gz | 2.9 MB | ||
| EGAF50000107314 | tsv.gz | 1.5 MB | ||
| EGAF50000107315 | tsv.gz | 1.4 MB | ||
| EGAF50000107316 | tsv.gz | 2.6 MB | ||
| EGAF50000107317 | tsv.gz | 4.3 MB | ||
| EGAF50000107318 | tsv.gz | 4.0 MB | ||
| EGAF50000107319 | tsv.gz | 3.5 MB | ||
| EGAF50000107320 | tsv.gz | 3.1 MB | ||
| EGAF50000107321 | tsv.gz | 2.0 MB | ||
| EGAF50000107322 | tsv.gz | 4.0 MB | ||
| EGAF50000107323 | tsv.gz | 2.4 MB | ||
| EGAF50000107324 | tsv.gz | 1.9 MB | ||
| EGAF50000107325 | tsv.gz | 3.0 MB | ||
| EGAF50000107326 | tsv.gz | 3.3 MB | ||
| EGAF50000107327 | tsv.gz | 3.9 MB | ||
| EGAF50000107328 | tsv.gz | 3.0 MB | ||
| EGAF50000107329 | tsv.gz | 3.4 MB | ||
| EGAF50000107330 | tsv.gz | 2.6 MB | ||
| EGAF50000107331 | tsv.gz | 3.1 MB | ||
| EGAF50000107332 | tsv.gz | 3.3 MB | ||
| EGAF50000107333 | tsv.gz | 2.8 MB | ||
| EGAF50000107334 | tsv.gz | 2.2 MB | ||
| EGAF50000107335 | tsv.gz | 3.8 MB | ||
| EGAF50000107336 | tsv.gz | 2.6 MB | ||
| EGAF50000107337 | tsv.gz | 1.7 MB | ||
| EGAF50000107338 | tsv.gz | 2.2 MB | ||
| EGAF50000107339 | tsv.gz | 3.7 MB | ||
| EGAF50000107340 | tsv.gz | 1.5 MB | ||
| EGAF50000107341 | tsv.gz | 2.9 MB | ||
| EGAF50000107342 | tsv.gz | 4.4 MB | ||
| EGAF50000107343 | tsv.gz | 4.0 MB | ||
| EGAF50000107344 | tsv.gz | 3.4 MB | ||
| EGAF50000107345 | tsv.gz | 4.2 MB | ||
| EGAF50000107346 | tsv.gz | 2.1 MB | ||
| EGAF50000107347 | tsv.gz | 3.5 MB | ||
| EGAF50000107348 | tsv.gz | 2.6 MB | ||
| EGAF50000107349 | tsv.gz | 3.6 MB | ||
| EGAF50000107350 | tsv.gz | 3.0 MB | ||
| EGAF50000107351 | tsv.gz | 2.9 MB | ||
| EGAF50000107352 | tsv.gz | 4.2 MB | ||
| EGAF50000107353 | tsv.gz | 3.1 MB | ||
| EGAF50000107354 | tsv.gz | 3.2 MB | ||
| EGAF50000107355 | tsv.gz | 1.1 MB | ||
| EGAF50000107356 | tsv.gz | 4.1 MB | ||
| EGAF50000107357 | tsv.gz | 2.0 MB | ||
| EGAF50000107358 | tsv.gz | 3.1 MB | ||
| EGAF50000107359 | tsv.gz | 3.0 MB | ||
| EGAF50000107360 | tsv.gz | 2.6 MB | ||
| EGAF50000107361 | tsv.gz | 3.6 MB | ||
| EGAF50000107362 | tsv.gz | 1.9 MB | ||
| EGAF50000107363 | tsv.gz | 3.4 MB | ||
| EGAF50000107364 | tsv.gz | 3.4 MB | ||
| EGAF50000107365 | tsv.gz | 2.3 MB | ||
| EGAF50000107366 | tsv.gz | 3.1 MB | ||
| EGAF50000107367 | tsv.gz | 2.4 MB | ||
| EGAF50000107368 | tsv.gz | 2.7 MB | ||
| EGAF50000107369 | tsv.gz | 3.5 MB | ||
| EGAF50000107370 | tsv.gz | 2.6 MB | ||
| EGAF50000107371 | tsv.gz | 1.5 MB | ||
| EGAF50000107372 | tsv.gz | 2.2 MB | ||
| EGAF50000107373 | tsv.gz | 3.6 MB | ||
| EGAF50000107374 | tsv.gz | 3.0 MB | ||
| EGAF50000107375 | tsv.gz | 2.3 MB | ||
| EGAF50000107376 | tsv.gz | 2.4 MB | ||
| EGAF50000107377 | tsv.gz | 3.3 MB | ||
| EGAF50000107378 | tsv.gz | 1.9 MB | ||
| EGAF50000107379 | tsv.gz | 3.0 MB | ||
| EGAF50000107380 | tsv.gz | 2.6 MB | ||
| EGAF50000107381 | tsv.gz | 1.6 MB | ||
| EGAF50000107382 | tsv.gz | 2.5 MB | ||
| EGAF50000107383 | tsv.gz | 2.7 MB | ||
| EGAF50000107384 | tsv.gz | 3.2 MB | ||
| EGAF50000107385 | tsv.gz | 1.8 MB | ||
| EGAF50000107386 | tsv.gz | 2.6 MB | ||
| EGAF50000107387 | tsv.gz | 2.7 MB | ||
| EGAF50000107388 | tsv.gz | 2.8 MB | ||
| EGAF50000107389 | tsv.gz | 2.7 MB | ||
| EGAF50000107390 | tsv.gz | 2.0 MB | ||
| EGAF50000107391 | tsv.gz | 2.4 MB | ||
| EGAF50000107392 | tsv.gz | 3.4 MB | ||
| EGAF50000107393 | tsv.gz | 944.1 kB | ||
| EGAF50000107394 | tsv.gz | 3.1 MB | ||
| EGAF50000107395 | tsv.gz | 1.7 MB | ||
| EGAF50000107396 | tsv.gz | 2.6 MB | ||
| EGAF50000107397 | tsv.gz | 2.0 MB | ||
| EGAF50000107398 | tsv.gz | 3.3 MB | ||
| EGAF50000107399 | tsv.gz | 2.6 MB | ||
| EGAF50000107400 | tsv.gz | 2.4 MB | ||
| EGAF50000107401 | tsv.gz | 4.2 MB | ||
| EGAF50000107402 | tsv.gz | 2.4 MB | ||
| EGAF50000107403 | tsv.gz | 1.7 MB | ||
| EGAF50000107404 | tsv.gz | 2.0 MB | ||
| EGAF50000107405 | tsv.gz | 2.8 MB | ||
| EGAF50000107406 | tsv.gz | 2.9 MB | ||
| EGAF50000107407 | tsv.gz | 2.7 MB | ||
| EGAF50000107408 | tsv.gz | 3.2 MB | ||
| EGAF50000107409 | tsv.gz | 3.2 MB | ||
| EGAF50000107410 | tsv.gz | 3.4 MB | ||
| EGAF50000107411 | tsv.gz | 2.2 MB | ||
| EGAF50000107412 | tsv.gz | 3.0 MB | ||
| EGAF50000107413 | tsv.gz | 2.8 MB | ||
| EGAF50000107414 | tsv.gz | 3.0 MB | ||
| EGAF50000107415 | tsv.gz | 3.0 MB | ||
| EGAF50000107416 | tsv.gz | 2.8 MB | ||
| EGAF50000107417 | tsv.gz | 2.0 MB | ||
| EGAF50000107418 | tsv.gz | 2.8 MB | ||
| EGAF50000107419 | tsv.gz | 3.5 MB | ||
| EGAF50000107420 | tsv.gz | 2.8 MB | ||
| EGAF50000107421 | tsv.gz | 2.7 MB | ||
| EGAF50000107422 | tsv.gz | 3.0 MB | ||
| EGAF50000107423 | tsv.gz | 3.0 MB | ||
| EGAF50000107424 | tsv.gz | 2.3 MB | ||
| EGAF50000107425 | tsv.gz | 1.8 MB | ||
| EGAF50000107426 | tsv.gz | 3.3 MB | ||
| EGAF50000107427 | tsv.gz | 2.7 MB | ||
| EGAF50000107428 | tsv.gz | 3.5 MB | ||
| EGAF50000107429 | tsv.gz | 2.3 MB | ||
| EGAF50000107430 | tsv.gz | 2.9 MB | ||
| EGAF50000107431 | tsv.gz | 3.0 MB | ||
| EGAF50000107432 | tsv.gz | 2.0 MB | ||
| EGAF50000107433 | tsv.gz | 1.9 MB | ||
| EGAF50000107434 | tsv.gz | 3.0 MB | ||
| EGAF50000107435 | tsv.gz | 3.6 MB | ||
| EGAF50000107436 | tsv.gz | 684.7 kB | ||
| EGAF50000107437 | tsv.gz | 2.8 MB | ||
| EGAF50000107438 | tsv.gz | 2.2 MB | ||
| EGAF50000107439 | tsv.gz | 3.1 MB | ||
| EGAF50000107440 | tsv.gz | 920.0 kB | ||
| EGAF50000107441 | tsv.gz | 3.4 MB | ||
| EGAF50000107442 | tsv.gz | 3.7 MB | ||
| EGAF50000107443 | tsv.gz | 2.6 MB | ||
| EGAF50000107444 | tsv.gz | 2.3 MB | ||
| EGAF50000107445 | tsv.gz | 2.5 MB | ||
| EGAF50000107446 | tsv.gz | 2.9 MB | ||
| EGAF50000107447 | tsv.gz | 1.9 MB | ||
| EGAF50000107448 | tsv.gz | 4.0 MB | ||
| EGAF50000107449 | tsv.gz | 836.5 kB | ||
| EGAF50000107450 | tsv.gz | 2.0 MB | ||
| EGAF50000107451 | tsv.gz | 1.7 MB | ||
| EGAF50000107452 | tsv.gz | 2.9 MB | ||
| EGAF50000107453 | tsv.gz | 2.3 MB | ||
| EGAF50000107454 | tsv.gz | 2.6 MB | ||
| EGAF50000107455 | tsv.gz | 2.3 MB | ||
| EGAF50000107456 | tsv.gz | 2.3 MB | ||
| EGAF50000108483 | tsv.gz | 2.7 MB | ||
| EGAF50000108484 | tsv.gz | 3.1 MB | ||
| EGAF50000108485 | tsv.gz | 2.4 MB | ||
| EGAF50000108486 | tsv.gz | 3.3 MB | ||
| EGAF50000108487 | tsv.gz | 1.6 MB | ||
| EGAF50000108488 | tsv.gz | 2.9 MB | ||
| EGAF50000108489 | tsv.gz | 2.9 MB | ||
| EGAF50000108490 | tsv.gz | 1.2 MB | ||
| 173 Files (476.9 MB) | ||||