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scRNAseq of ARID1B+/+ (control) and ARID1B+/- human telencephalic organoids at D120

This dataset contains scRNAseq data of human telencephalic organoids, at day 120, from 4 different sequencing runs (libraries), as follows (please see cell line clone nomenclature in original publication): 1. Library 177136: Pat.2 ARID1B+/+ clone 2c (2 organoids, E11rep_1, E11rep_2), Pat.2 ARID1B+/- clone 2a (2 organoids: B002orig_1, B002orig_2) 2. Library 178119: Pat.2 ARID1B+/+ clone 2c (3 organoids: E11rep_1, E11rep_2, E11rep_3), Pat.2 ARID1B+/- clone 2a (3 organoids: B002orig_1, B002orig_2, B002orig_3) 3. Library 178120: Pat.2 ARID1B+/+ clone 2d (3 organoids: A3rep_1, A3rep_2, A3rep_3), Pat.2 ARID1B+/- clone 2b (3 organoids: B002_F7_1, B002_F7_2, B002_F7_3) 4. Library 184337: Pat.1 ARID1B+/- clone 1a (3 organoids: B001orig_1, B001orig_2, B001orig_3), HD.1 ARID1B+/+ clone 3a (3 organoids: 176_1, 176_2, 176_3), HD.1 ARID1B+/- clone 3b (3 organoids: F10_1, F10_2, F10_3)

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Data Access Policy for IMBA is as follows. The following questions will be evaluated by the Data Access Committee for IMBA: Does the research project comply with the original informed consent? Project's ethical approval Security and confidentiality of the local environment Preventing re-identity of the subject from the published data Accept or Deny Contract between requester and corresponding author Authorization tool

Data Access EGA studies consist of one or more datasets. Each dataset is affiliated to a Data Access Committee (DAC), which is the body responsible for all data access decisions. Data Access Comitte for IMBA Contact persons: ethics@imba.oeaw.ac.at Contact persons: Arabella Meixner/Nina Malajner Data Access Policy: Does the research project comply with the original informed consent? Project's ethical approval Security and confidentiality of the local environment Preventing re-identity of the subject from the published data Accept or Deny Contract between requester and corresponding author Authorization tool Ethical principles IMBA fulfills all legal requirements as Research Institute in Austria that is allowed by Austrian law to use, process, collect and import human cells and human tissue. This study is designed and shall be implemented and reported in accordance with the ICH (International Conference on Harmonization) Harmonized Tripartite Guidelines for Good Clinical Practice, with the ethical principles stated in the Declaration of Helsinki. All procedures will be performed after patients’ written informed consent and after approval by the local national ethic committee/Institutional Review Board following the national, international and EU ethics regulations. The samples received have been pseudonymized/anonymized at the local institutions and thus cannot be retracked by any IMBA employee. The identity and other types of personal information of the patients will be treated strictly confidential. All required licenses necessary for the execution of the project are in place. Their validity is monitored by our “Ethics and Biosafety” Department. If applicable, their renewal process will be initiated in time to guarantee continuous validity. The group leader and all scientists will respect the highest standards of research integrity and will ensure: to present all research goals in an honest and transparent manner to design the research carefully and conduct it in a reliable fashion to use appropriate techniques and methodologies (including for data management) to exercise due care for the subjects of research to ensure objectivity, accuracy and impartiality while disseminating to make the necessary references to refrain from plagiarism, data falsification or fabrication to avoid double funding, conflicts of interest and misrepresentation of credentials All persons involved in research are obliged to adhere to the principles of integrity in research and scholarship as well as to the Standards of Good Scientific Practice. IMBA, via the membership of the Austrian Academy of Sciences, has adopted guidelines and procedural regulations of the Austrian Agency for Research Integrity https://oeawi.at/richtlinien/”.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000344 Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008344308 fastq.gz 6.7 GB
EGAF00008344327 fastq.gz 12.9 GB
EGAF00008344330 fastq.gz 7.5 GB
EGAF00008344350 fastq.gz 14.3 GB
EGAF00008344351 fastq.gz 9.0 GB
EGAF00008344363 fastq.gz 7.8 GB
EGAF00008344369 fastq.gz 17.1 GB
EGAF00008344392 fastq.gz 1.7 GB
EGAF00008344404 fastq.gz 4.2 GB
EGAF00008344408 fastq.gz 1.8 GB
EGAF00008344427 fastq.gz 15.1 GB
EGAF00008344428 fastq.gz 1.7 GB
EGAF00008348047 fastq.gz 4.2 GB
EGAF00008348050 fastq.gz 1.9 GB
EGAF00008348065 fastq.gz 4.3 GB
EGAF00008348074 fastq.gz 4.5 GB
EGAF00008348078 fastq.gz 1.6 GB
EGAF00008348083 fastq.gz 3.9 GB
EGAF00008348097 fastq.gz 4.1 GB
EGAF00008348114 fastq.gz 2.1 GB
EGAF00008348125 fastq.gz 1.7 GB
EGAF00008348128 fastq.gz 5.5 GB
EGAF00008348134 fastq.gz 5.4 GB
EGAF00008348139 fastq.gz 5.6 GB
EGAF00008348149 fastq.gz 1.6 GB
EGAF00008348158 fastq.gz 2.0 GB
EGAF00008348182 fastq.gz 2.0 GB
EGAF00008348185 fastq.gz 5.8 GB
EGAF00008348187 fastq.gz 4.2 GB
EGAF00008348196 fastq.gz 2.4 GB
EGAF00008348203 fastq.gz 1.6 GB
EGAF00008348206 fastq.gz 2.0 GB
EGAF00008348239 fastq.gz 5.6 GB
EGAF00008348242 fastq.gz 1.7 GB
EGAF00008348249 fastq.gz 3.4 GB
EGAF00008348252 fastq.gz 3.6 GB
EGAF00008348261 fastq.gz 2.4 GB
EGAF00008348294 fastq.gz 2.5 GB
EGAF00008348305 fastq.gz 2.3 GB
EGAF00008348308 fastq.gz 2.4 GB
EGAF00008348331 fastq.gz 4.3 GB
EGAF00008348338 fastq.gz 2.1 GB
EGAF00008348354 fastq.gz 2.2 GB
EGAF00008348371 fastq.gz 4.8 GB
EGAF00008348372 fastq.gz 4.4 GB
EGAF00008348374 fastq.gz 4.7 GB
EGAF00008348387 fastq.gz 4.3 GB
EGAF00008348398 fastq.gz 3.4 GB
EGAF00008348408 fastq.gz 1.9 GB
EGAF00008348455 fastq.gz 4.2 GB
50 Files (226.7 GB)