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Whole transcriptome sequencing of pheochromocytoma and paraganglioma arising from germline SDHB mutations

Paired-end 150 basepair whole transcriptome sequencing of 91 SDHB-deficient non-metastatic and metastatic pheochromocytoma and paraganglioma. Samples were prepared using the NEB-Next directional RNA-Seq kit (NEB, USA) and underwent 150bp paired-end sequencing on the Illumina NovaSeq 6000 (Illumina, USA) according to manufacturer’s instructions. This dataset contains raw sequencing reads in FASTQ format.

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University of Melbourne Cancer Research Centre (UMCCR) Data Access Committee (DAC) request form

University of Melbourne Cancer Research Centre (UMCCR) Data Access Committee (DAC) request form Email the completed form to: UMCCR-DAC@unimelb.edu.au The following form is to be used to submit an expression of interest to access data under the purview of the UMCCR-DAC and does not represent a binding data access agreement. REQUESTOR INFORMATION Graduate research student requestors must include their supervisor or a senior researcher as the Principal Investigator. Please use institutional email addresses only. Requestor Name: Job Title/Position: Department and Institution: Telephone: Email: Postal Address: Principal Investigator (if different to the Requestor) Name: Job Title/Position: Department and Institution: Telephone: Email: Postal Address: Authorised Institutional Representative Name: Job Title/Position: Institution: Telephone: Email: Postal Address: DATA REQUESTED Data description Include the EGA study and dataset accession number(s), other data identifier(s) and/or the name of the publication describing the data. Data type Is the requested data identifiable? (Whole-genome sequencing data is not considered identifiable.) ☐ Yes ☐ No PROJECT DETAILS Project description Describe the project in which the data will be used (500 words maximum). This should include specific details of the aims and what you plan to do with the data. Members of the project team requiring access to the data. Include the following information: Name Job title/position Institution Email Supervisor Feasibility Describe previous experience in this field of research and/or in similar projects by the requestor, principal investigator and other members of the project team. ETHICS APPROVAL Does this project require approval from a Human Research Ethics Committee (HREC) or comparable committee? ☐ Yes ☐ No If yes, name the HREC from which approval has been requested or obtained and attach relevant documentation (ethics application and/or approval documentation). If no, please explain why ethics approval is not required.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000346 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008431996 fastq.gz 9.7 GB
EGAF00008432012 fastq.gz 11.6 GB
EGAF00008432036 fastq.gz 8.1 GB
EGAF00008432058 fastq.gz 7.3 GB
EGAF00008432080 fastq.gz 6.6 GB
EGAF00008432095 fastq.gz 7.3 GB
EGAF00008432103 fastq.gz 5.8 GB
EGAF00008432114 fastq.gz 5.8 GB
EGAF00008432184 fastq.gz 5.2 GB
EGAF00008432208 fastq.gz 5.1 GB
EGAF00008432214 fastq.gz 5.6 GB
EGAF00008432217 fastq.gz 5.5 GB
EGAF00008432223 fastq.gz 9.4 GB
EGAF00008432227 fastq.gz 7.9 GB
EGAF00008432248 fastq.gz 8.1 GB
EGAF00008432258 fastq.gz 9.3 GB
EGAF00008432267 fastq.gz 7.2 GB
EGAF00008432271 fastq.gz 9.3 GB
EGAF00008432294 fastq.gz 6.0 GB
EGAF00008432296 fastq.gz 7.7 GB
EGAF00008432301 fastq.gz 4.7 GB
EGAF00008432371 fastq.gz 7.3 GB
EGAF00008432373 fastq.gz 8.0 GB
EGAF00008432422 fastq.gz 8.3 GB
EGAF00008432440 fastq.gz 7.9 GB
EGAF00008432456 fastq.gz 5.3 GB
EGAF00008432462 fastq.gz 9.5 GB
EGAF00008432475 fastq.gz 7.8 GB
EGAF00008432487 fastq.gz 5.8 GB
EGAF00008432493 fastq.gz 4.9 GB
EGAF00008432498 fastq.gz 1.2 GB
EGAF00008432499 fastq.gz 7.7 GB
EGAF00008432565 fastq.gz 5.5 GB
EGAF00008432580 fastq.gz 6.9 GB
EGAF00008432581 fastq.gz 8.5 GB
EGAF00008432584 fastq.gz 6.1 GB
EGAF00008432627 fastq.gz 8.1 GB
EGAF00008432647 fastq.gz 6.8 GB
EGAF00008432665 fastq.gz 7.3 GB
EGAF00008432668 fastq.gz 7.5 GB
EGAF00008432670 fastq.gz 6.5 GB
EGAF00008432687 fastq.gz 7.9 GB
EGAF00008432692 fastq.gz 7.1 GB
EGAF00008432696 fastq.gz 9.0 GB
EGAF00008432707 fastq.gz 4.6 GB
EGAF00008432727 fastq.gz 7.8 GB
EGAF00008432755 fastq.gz 9.3 GB
EGAF00008432792 fastq.gz 7.7 GB
EGAF00008432795 fastq.gz 4.8 GB
EGAF00008432807 fastq.gz 8.9 GB
EGAF00008432809 fastq.gz 6.7 GB
EGAF00008432815 fastq.gz 5.4 GB
EGAF00008432827 fastq.gz 7.1 GB
EGAF00008432836 fastq.gz 7.8 GB
EGAF00008432837 fastq.gz 9.7 GB
EGAF00008432936 fastq.gz 8.6 GB
EGAF00008432945 fastq.gz 9.4 GB
EGAF00008432950 fastq.gz 7.7 GB
EGAF00008433033 fastq.gz 8.0 GB
EGAF00008433037 fastq.gz 7.2 GB
EGAF00008433140 fastq.gz 7.8 GB
EGAF00008433152 fastq.gz 6.2 GB
EGAF00008433162 fastq.gz 4.9 GB
EGAF00008433166 fastq.gz 9.5 GB
EGAF00008433175 fastq.gz 6.5 GB
EGAF00008433185 fastq.gz 8.2 GB
EGAF00008433203 fastq.gz 4.8 GB
EGAF00008433268 fastq.gz 5.4 GB
EGAF00008433352 fastq.gz 7.5 GB
EGAF00008433353 fastq.gz 9.6 GB
EGAF00008433359 fastq.gz 7.4 GB
EGAF00008433362 fastq.gz 5.5 GB
EGAF00008433369 fastq.gz 7.4 GB
EGAF00008433372 fastq.gz 7.0 GB
EGAF00008433381 fastq.gz 6.6 GB
EGAF00008433388 fastq.gz 6.9 GB
EGAF00008433439 fastq.gz 3.8 GB
EGAF00008433490 fastq.gz 8.5 GB
EGAF00008433498 fastq.gz 8.0 GB
EGAF00008433527 fastq.gz 5.0 GB
EGAF00008433596 fastq.gz 6.2 GB
EGAF00008433618 fastq.gz 7.3 GB
EGAF00008433624 fastq.gz 7.7 GB
EGAF00008433625 fastq.gz 8.3 GB
EGAF00008433627 fastq.gz 5.0 GB
EGAF00008433629 fastq.gz 4.3 GB
EGAF00008433638 fastq.gz 4.4 GB
EGAF00008433658 fastq.gz 9.4 GB
EGAF00008433662 fastq.gz 5.2 GB
EGAF00008433665 fastq.gz 8.4 GB
EGAF00008433722 fastq.gz 7.8 GB
EGAF00008433845 fastq.gz 6.6 GB
EGAF00008433870 fastq.gz 7.1 GB
EGAF00008433937 fastq.gz 8.7 GB
EGAF00008433973 fastq.gz 7.0 GB
EGAF00008434010 fastq.gz 6.7 GB
EGAF00008434029 fastq.gz 9.0 GB
EGAF00008434036 fastq.gz 9.5 GB
EGAF00008434041 fastq.gz 6.1 GB
EGAF00008434051 fastq.gz 5.0 GB
EGAF00008434066 fastq.gz 6.9 GB
EGAF00008434068 fastq.gz 7.6 GB
EGAF00008434081 fastq.gz 8.1 GB
EGAF00008434096 fastq.gz 8.2 GB
EGAF00008434102 fastq.gz 7.9 GB
EGAF00008434107 fastq.gz 7.8 GB
EGAF00008434192 fastq.gz 9.3 GB
EGAF00008434211 fastq.gz 8.7 GB
EGAF00008434405 fastq.gz 8.4 GB
EGAF00008434506 fastq.gz 8.3 GB
EGAF00008434668 fastq.gz 7.0 GB
EGAF00008434687 fastq.gz 7.1 GB
EGAF00008434707 fastq.gz 4.4 GB
EGAF00008434738 fastq.gz 6.8 GB
EGAF00008434779 fastq.gz 7.9 GB
EGAF00008434813 fastq.gz 8.8 GB
EGAF00008434827 fastq.gz 6.1 GB
EGAF00008434833 fastq.gz 4.9 GB
EGAF00008434839 fastq.gz 4.4 GB
EGAF00008434861 fastq.gz 8.3 GB
EGAF00008434876 fastq.gz 7.4 GB
EGAF00008434886 fastq.gz 5.1 GB
EGAF00008434894 fastq.gz 7.6 GB
EGAF00008434917 fastq.gz 7.0 GB
EGAF00008434940 fastq.gz 7.9 GB
EGAF00008434942 fastq.gz 1.3 GB
EGAF00008435030 fastq.gz 8.2 GB
EGAF00008435069 fastq.gz 7.7 GB
EGAF00008435074 fastq.gz 7.0 GB
EGAF00008435110 fastq.gz 9.4 GB
EGAF00008435122 fastq.gz 10.4 GB
EGAF00008435123 fastq.gz 9.8 GB
EGAF00008435149 fastq.gz 6.0 GB
EGAF00008435155 fastq.gz 7.1 GB
EGAF00008435238 fastq.gz 3.6 GB
EGAF00008435284 fastq.gz 11.4 GB
EGAF00008435291 fastq.gz 8.0 GB
EGAF00008435299 fastq.gz 7.7 GB
EGAF00008435322 fastq.gz 8.5 GB
EGAF00008435329 fastq.gz 7.9 GB
EGAF00008435352 fastq.gz 7.6 GB
EGAF00008435354 fastq.gz 7.0 GB
EGAF00008435355 fastq.gz 8.2 GB
EGAF00008435356 fastq.gz 9.4 GB
EGAF00008435359 fastq.gz 10.4 GB
EGAF00008435362 fastq.gz 5.1 GB
EGAF00008435363 fastq.gz 8.5 GB
EGAF00008435364 fastq.gz 9.1 GB
EGAF00008435396 fastq.gz 8.7 GB
EGAF00008435438 fastq.gz 7.8 GB
EGAF00008435488 fastq.gz 7.1 GB
EGAF00008435502 fastq.gz 7.1 GB
EGAF00008435680 fastq.gz 6.7 GB
EGAF00008435717 fastq.gz 7.2 GB
EGAF00008435737 fastq.gz 8.8 GB
EGAF00008435739 fastq.gz 4.8 GB
EGAF00008435743 fastq.gz 7.4 GB
EGAF00008435763 fastq.gz 6.4 GB
EGAF00008435872 fastq.gz 7.2 GB
EGAF00008436020 fastq.gz 6.3 GB
EGAF00008436024 fastq.gz 8.9 GB
EGAF00008436100 fastq.gz 4.4 GB
EGAF00008436161 fastq.gz 4.3 GB
EGAF00008436197 fastq.gz 6.2 GB
EGAF00008436216 fastq.gz 8.3 GB
EGAF00008436236 fastq.gz 8.1 GB
EGAF00008436254 fastq.gz 8.1 GB
EGAF00008436260 fastq.gz 6.1 GB
EGAF00008436371 fastq.gz 4.6 GB
EGAF00008436373 fastq.gz 7.5 GB
EGAF00008436375 fastq.gz 8.5 GB
EGAF00008436377 fastq.gz 7.2 GB
EGAF00008436380 fastq.gz 7.5 GB
EGAF00008436382 fastq.gz 5.7 GB
EGAF00008436383 fastq.gz 5.1 GB
EGAF00008436384 fastq.gz 8.9 GB
EGAF00008436385 fastq.gz 9.1 GB
EGAF00008436386 fastq.gz 9.0 GB
EGAF00008436387 fastq.gz 9.1 GB
EGAF00008436389 fastq.gz 9.5 GB
EGAF00008436501 fastq.gz 7.6 GB
EGAF00008436503 fastq.gz 7.5 GB
182 Files (1.3 TB)