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Shallow whole genome sequencing of tumor Samples

Shallow whole genome sequencing of tumor Samples included in the GLASS cohort

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Data originating from patient samples

The Amsterdam UMC, tumor genome analysis core, allows access to published datasets upon written application and signature of a Data Access Agreement (DAA). In addition, applications to clinical datasets require approval by a Data Access Committee (DAC), who assess whether the proposed work is allowed given patient consent, as well as the scientific purpose. To aid this process we ask you to provide the information below. Requests will be prioritised according to novelty of the research question. Applications with insufficient detail on objectives, justification, and methods/planned analyses are unlikely to be accepted. 1.Reference number for the dataset 2.Full legal name and address of university/institution 3.Name(s) of the Principle Investigator who will use the data: 4.Name(s) and job title(s) of any other investigators who will use the data: 5.Please provide a minimum of one reference to a publication that can be found on PubMed and where the Principle Investigator is an author: 6.How will the data be stored and where will it be stored? 7.What is the proposed study title and what are the objectives and outcomes of the study in which the data will be used 8.Please provide a brief justification or rationale for the proposed study (max 250 words) 9.Please provide a brief description of planned data analyses (max 250 words): 10.Will the results arising from use of the data be used for the creation of products for sale or for any commercial purpose?

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001007527 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000130193 bam 303.8 MB
EGAF50000130194 bam 338.1 MB
EGAF50000130195 bam 317.6 MB
EGAF50000130196 bam 489.2 MB
EGAF50000130197 bam 337.5 MB
EGAF50000130198 bam 385.1 MB
EGAF50000130199 bam 233.0 MB
EGAF50000130200 bam 212.2 MB
EGAF50000130201 bam 383.7 MB
EGAF50000130202 bam 382.2 MB
EGAF50000130203 bam 329.1 MB
EGAF50000130204 bam 328.3 MB
EGAF50000130205 bam 292.7 MB
EGAF50000130206 bam 286.3 MB
EGAF50000130207 bam 399.7 MB
EGAF50000130208 bam 378.6 MB
EGAF50000130209 bam 377.9 MB
EGAF50000130210 bam 356.9 MB
EGAF50000130211 bam 310.1 MB
EGAF50000130212 bam 348.4 MB
EGAF50000130213 bam 443.7 MB
EGAF50000130214 bam 340.5 MB
EGAF50000130215 bam 385.7 MB
EGAF50000130216 bam 323.0 MB
EGAF50000130217 bam 450.4 MB
EGAF50000130218 bam 270.1 MB
EGAF50000130219 bam 354.0 MB
EGAF50000130220 bam 379.1 MB
EGAF50000130221 bam 398.7 MB
EGAF50000130222 bam 337.5 MB
EGAF50000130223 bam 374.8 MB
EGAF50000130224 bam 407.1 MB
EGAF50000130225 bam 354.7 MB
EGAF50000130226 bam 394.2 MB
EGAF50000130227 bam 458.7 MB
EGAF50000130228 bam 244.6 MB
EGAF50000130229 bam 363.2 MB
EGAF50000130230 bam 447.5 MB
EGAF50000130231 bam 398.2 MB
EGAF50000130232 bam 375.1 MB
EGAF50000130233 bam 289.9 MB
EGAF50000130234 bam 229.6 MB
EGAF50000130235 bam 409.5 MB
EGAF50000130236 bam 577.6 MB
EGAF50000130237 bam 327.8 MB
EGAF50000130238 bam 276.8 MB
EGAF50000130239 bam 297.5 MB
EGAF50000130240 bam 249.1 MB
EGAF50000130241 bam 244.5 MB
EGAF50000130242 bam 276.4 MB
EGAF50000130243 bam 291.0 MB
EGAF50000130244 bam 225.6 MB
EGAF50000130245 bam 281.7 MB
EGAF50000130246 bam 374.4 MB
EGAF50000130247 bam 357.6 MB
EGAF50000130248 bam 301.6 MB
EGAF50000130249 bam 364.4 MB
EGAF50000130250 bam 448.2 MB
EGAF50000130251 bam 345.2 MB
EGAF50000130252 bam 322.3 MB
EGAF50000130253 bam 338.9 MB
EGAF50000130254 bam 324.4 MB
EGAF50000130255 bam 230.3 MB
EGAF50000130256 bam 143.3 MB
EGAF50000130257 bam 168.9 MB
EGAF50000130258 bam 120.4 MB
EGAF50000130259 bam 179.4 MB
EGAF50000130260 bam 182.1 MB
EGAF50000130261 bam 292.3 MB
EGAF50000130262 bam 265.5 MB
EGAF50000130263 bam 54.0 MB
EGAF50000130264 bam 76.5 MB
EGAF50000130265 bam 32.1 MB
EGAF50000130266 bam 421.6 MB
EGAF50000130267 bam 246.6 MB
EGAF50000130268 bam 246.7 MB
EGAF50000130269 bam 59.6 MB
EGAF50000130270 bam 691.3 MB
EGAF50000130271 bam 159.5 MB
EGAF50000130272 bam 271.7 MB
EGAF50000130273 bam 343.7 MB
EGAF50000130274 bam 181.7 MB
EGAF50000130275 bam 197.9 MB
EGAF50000130276 bam 266.6 MB
EGAF50000130277 bam 137.5 MB
EGAF50000130278 bam 865.3 MB
EGAF50000130279 bam 364.7 MB
EGAF50000130280 bam 261.6 MB
EGAF50000130281 bam 433.9 MB
EGAF50000130282 bam 277.7 MB
EGAF50000130283 bam 316.6 MB
EGAF50000130284 bam 175.7 MB
EGAF50000130285 bam 234.7 MB
EGAF50000130286 bam 535.5 MB
EGAF50000130287 bam 435.7 MB
EGAF50000130288 bam 171.7 MB
EGAF50000130289 bam 523.3 MB
EGAF50000130290 bam 243.7 MB
EGAF50000130291 bam 191.2 MB
EGAF50000130292 bam 177.9 MB
EGAF50000130293 bam 242.0 MB
EGAF50000130294 bam 276.2 MB
EGAF50000130295 bam 268.1 MB
EGAF50000130296 bam 211.0 MB
EGAF50000130297 bam 294.0 MB
EGAF50000130298 bam 274.0 MB
EGAF50000130299 bam 364.6 MB
EGAF50000130300 bam 327.4 MB
EGAF50000130301 bam 196.0 MB
EGAF50000130302 bam 201.9 MB
EGAF50000130303 bam 235.8 MB
EGAF50000130304 bam 293.7 MB
EGAF50000130305 bam 414.5 MB
EGAF50000130306 bam 256.0 MB
EGAF50000130307 bam 444.2 MB
EGAF50000130308 bam 376.0 MB
EGAF50000130309 bam 252.1 MB
EGAF50000130310 bam 418.3 MB
EGAF50000130311 bam 239.9 MB
EGAF50000130312 bam 354.3 MB
EGAF50000130313 bam 390.6 MB
EGAF50000130314 bam 332.3 MB
EGAF50000130315 bam 390.7 MB
EGAF50000130316 bam 388.6 MB
EGAF50000130317 bam 334.6 MB
EGAF50000130318 bam 286.7 MB
EGAF50000130319 bam 353.1 MB
EGAF50000130320 bam 317.6 MB
EGAF50000130321 bam 404.0 MB
EGAF50000130322 bam 390.9 MB
EGAF50000130323 bam 230.0 MB
EGAF50000130324 bam 398.2 MB
EGAF50000130325 bam 148.5 MB
EGAF50000130326 bam 290.9 MB
EGAF50000130327 bam 270.7 MB
EGAF50000130328 bam 370.1 MB
EGAF50000130329 bam 392.6 MB
EGAF50000130330 bam 349.3 MB
EGAF50000130331 bam 314.1 MB
EGAF50000130332 bam 327.0 MB
EGAF50000130333 bam 276.8 MB
EGAF50000130334 bam 248.6 MB
EGAF50000130335 bam 274.4 MB
EGAF50000130336 bam 302.6 MB
EGAF50000130337 bam 341.3 MB
EGAF50000130338 bam 246.2 MB
EGAF50000130339 bam 402.7 MB
EGAF50000130340 bam 289.0 MB
EGAF50000130341 bam 271.2 MB
EGAF50000130342 bam 214.8 MB
EGAF50000130343 bam 274.0 MB
EGAF50000130344 bam 308.8 MB
EGAF50000130345 bam 355.5 MB
EGAF50000130346 bam 292.3 MB
EGAF50000130347 bam 262.0 MB
EGAF50000130348 bam 336.7 MB
EGAF50000130349 bam 243.1 MB
EGAF50000130350 bam 348.7 MB
EGAF50000130351 bam 65.5 MB
EGAF50000130352 bam 337.3 MB
EGAF50000130353 bam 221.5 MB
EGAF50000130354 bam 240.3 MB
EGAF50000130355 bam 356.9 MB
EGAF50000130356 bam 425.9 MB
EGAF50000130357 bam 356.0 MB
EGAF50000130358 bam 291.0 MB
EGAF50000130359 bam 336.3 MB
EGAF50000130360 bam 343.4 MB
EGAF50000130361 bam 187.3 MB
EGAF50000130362 bam 258.9 MB
EGAF50000130363 bam 374.0 MB
EGAF50000130364 bam 287.1 MB
EGAF50000130365 bam 378.9 MB
EGAF50000130366 bam 313.4 MB
EGAF50000130367 bam 310.8 MB
EGAF50000130368 bam 276.8 MB
EGAF50000130369 bam 441.8 MB
EGAF50000130370 bam 276.2 MB
EGAF50000130371 bam 182.5 MB
EGAF50000130372 bam 296.4 MB
EGAF50000130373 bam 325.2 MB
EGAF50000130374 bam 388.1 MB
EGAF50000130375 bam 398.6 MB
EGAF50000130376 bam 343.8 MB
EGAF50000130377 bam 80.3 MB
EGAF50000130378 bam 403.9 MB
EGAF50000130379 bam 361.1 MB
EGAF50000130380 bam 394.4 MB
EGAF50000130381 bam 326.0 MB
EGAF50000130382 bam 389.7 MB
EGAF50000130383 bam 351.5 MB
EGAF50000130384 bam 375.3 MB
EGAF50000130385 bam 241.8 MB
EGAF50000130386 bam 271.6 MB
EGAF50000130387 bam 234.1 MB
EGAF50000130388 bam 359.3 MB
EGAF50000130389 bam 414.8 MB
EGAF50000130390 bam 364.9 MB
EGAF50000130391 bam 449.4 MB
EGAF50000130392 bam 278.6 MB
EGAF50000130393 bam 346.1 MB
EGAF50000130394 bam 360.0 MB
EGAF50000130395 bam 228.2 MB
EGAF50000130396 bam 292.6 MB
EGAF50000130397 bam 269.1 MB
EGAF50000130398 bam 338.8 MB
EGAF50000130399 bam 735.0 MB
EGAF50000130400 bam 254.6 MB
EGAF50000130401 bam 314.4 MB
EGAF50000130402 bam 264.4 MB
EGAF50000130403 bam 244.7 MB
EGAF50000130404 bam 327.7 MB
EGAF50000130405 bam 355.0 MB
EGAF50000130406 bam 310.4 MB
EGAF50000130407 bam 266.4 MB
EGAF50000130408 bam 284.8 MB
EGAF50000130409 bam 298.8 MB
EGAF50000130410 bam 308.2 MB
EGAF50000130411 bam 276.3 MB
EGAF50000130412 bam 444.3 MB
EGAF50000130413 bam 336.6 MB
EGAF50000130414 bam 362.3 MB
EGAF50000130415 bam 273.6 MB
EGAF50000130416 bam 344.2 MB
EGAF50000130417 bam 197.8 MB
EGAF50000130418 bam 244.4 MB
EGAF50000130419 bam 335.7 MB
EGAF50000130420 bam 355.9 MB
EGAF50000130421 bam 381.7 MB
EGAF50000130422 bam 314.7 MB
EGAF50000130423 bam 271.1 MB
EGAF50000130424 bam 462.4 MB
EGAF50000130425 bam 300.6 MB
EGAF50000130426 bam 254.7 MB
EGAF50000130427 bam 297.4 MB
EGAF50000130428 bam 304.7 MB
EGAF50000130429 bam 167.5 MB
EGAF50000130430 bam 320.6 MB
EGAF50000130431 bam 402.2 MB
239 Files (75.3 GB)