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RNAseq profiles from the CheckMate-142 clinical trial

The dataset contains RNAseq profiles of 57 patients from the CheckMate-142 clinical trial. The Allprep DNA/RNA FFPE kit was used to simultaneously purify genomic DNA and RNA from formalin-fixed, paraffin embedded (FFPE) tissue sections. Baseline tumor tissue samples were processed using the Illumina TruSeq RNA Access in-solution hybrid capture panel and underwent subsequent NGS on the Illumina NovaSeq platform. Fastq files are included.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000416 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008478893 fastq.gz 1.9 GB
EGAF00008478894 fastq.gz 1.9 GB
EGAF00008478895 fastq.gz 1.9 GB
EGAF00008478896 fastq.gz 1.9 GB
EGAF00008478897 fastq.gz 2.5 GB
EGAF00008478898 fastq.gz 1.8 GB
EGAF00008478899 fastq.gz 2.3 GB
EGAF00008478900 fastq.gz 2.6 GB
EGAF00008478901 fastq.gz 1.8 GB
EGAF00008478902 fastq.gz 2.4 GB
EGAF00008478903 fastq.gz 2.8 GB
EGAF00008478904 fastq.gz 2.9 GB
EGAF00008478905 fastq.gz 2.7 GB
EGAF00008478906 fastq.gz 2.6 GB
EGAF00008478907 fastq.gz 2.6 GB
EGAF00008478908 fastq.gz 2.7 GB
EGAF00008478909 fastq.gz 1.9 GB
EGAF00008478910 fastq.gz 2.4 GB
EGAF00008478911 fastq.gz 2.6 GB
EGAF00008478912 fastq.gz 2.6 GB
EGAF00008478913 fastq.gz 2.5 GB
EGAF00008478914 fastq.gz 2.4 GB
EGAF00008478915 fastq.gz 2.6 GB
EGAF00008478916 fastq.gz 2.0 GB
EGAF00008478917 fastq.gz 1.9 GB
EGAF00008478918 fastq.gz 2.7 GB
EGAF00008478919 fastq.gz 1.9 GB
EGAF00008478920 fastq.gz 2.5 GB
EGAF00008478921 fastq.gz 1.9 GB
EGAF00008478922 fastq.gz 2.0 GB
EGAF00008478923 fastq.gz 2.6 GB
EGAF00008478924 fastq.gz 2.9 GB
EGAF00008478925 fastq.gz 1.9 GB
EGAF00008478926 fastq.gz 2.5 GB
EGAF00008478927 fastq.gz 1.8 GB
EGAF00008478928 fastq.gz 2.1 GB
EGAF00008478929 fastq.gz 2.4 GB
EGAF00008478930 fastq.gz 2.0 GB
EGAF00008478931 fastq.gz 1.9 GB
EGAF00008478932 fastq.gz 3.0 GB
EGAF00008478933 fastq.gz 2.9 GB
EGAF00008478934 fastq.gz 2.0 GB
EGAF00008478935 fastq.gz 2.4 GB
EGAF00008478936 fastq.gz 2.1 GB
EGAF00008478937 fastq.gz 2.0 GB
EGAF00008478938 fastq.gz 1.9 GB
EGAF00008478939 fastq.gz 2.6 GB
EGAF00008478940 fastq.gz 2.0 GB
EGAF00008478941 fastq.gz 2.3 GB
EGAF00008478942 fastq.gz 2.3 GB
EGAF00008478943 fastq.gz 1.9 GB
EGAF00008478944 fastq.gz 2.4 GB
EGAF00008478945 fastq.gz 1.9 GB
EGAF00008478946 fastq.gz 2.8 GB
EGAF00008478947 fastq.gz 2.5 GB
EGAF00008478948 fastq.gz 2.5 GB
EGAF00008478949 fastq.gz 2.0 GB
EGAF00008478950 fastq.gz 2.3 GB
EGAF00008478951 fastq.gz 3.0 GB
EGAF00008478952 fastq.gz 2.5 GB
EGAF00008478953 fastq.gz 2.4 GB
EGAF00008478954 fastq.gz 2.1 GB
EGAF00008478955 fastq.gz 2.0 GB
EGAF00008478956 fastq.gz 2.4 GB
EGAF00008478957 fastq.gz 2.5 GB
EGAF00008478958 fastq.gz 2.6 GB
EGAF00008478959 fastq.gz 2.5 GB
EGAF00008478960 fastq.gz 2.2 GB
EGAF00008478961 fastq.gz 2.6 GB
EGAF00008478962 fastq.gz 2.6 GB
EGAF00008478963 fastq.gz 2.5 GB
EGAF00008478964 fastq.gz 2.0 GB
EGAF00008478965 fastq.gz 3.1 GB
EGAF00008478966 fastq.gz 2.4 GB
EGAF00008478967 fastq.gz 2.6 GB
EGAF00008478968 fastq.gz 1.9 GB
EGAF00008478969 fastq.gz 2.1 GB
EGAF00008478970 fastq.gz 3.2 GB
EGAF00008478971 fastq.gz 2.5 GB
EGAF00008478972 fastq.gz 2.6 GB
EGAF00008478973 fastq.gz 2.0 GB
EGAF00008478974 fastq.gz 2.1 GB
EGAF00008478975 fastq.gz 1.8 GB
EGAF00008478976 fastq.gz 2.7 GB
EGAF00008478977 fastq.gz 2.7 GB
EGAF00008478978 fastq.gz 2.4 GB
EGAF00008478979 fastq.gz 2.5 GB
EGAF00008478980 fastq.gz 2.5 GB
EGAF00008478981 fastq.gz 2.6 GB
EGAF00008478982 fastq.gz 2.4 GB
EGAF00008478983 fastq.gz 2.7 GB
EGAF00008478984 fastq.gz 2.1 GB
EGAF00008478985 fastq.gz 2.8 GB
EGAF00008478986 fastq.gz 1.9 GB
EGAF00008478987 fastq.gz 2.1 GB
EGAF00008478988 fastq.gz 2.4 GB
EGAF00008478989 fastq.gz 2.6 GB
EGAF00008478990 fastq.gz 1.9 GB
EGAF00008478991 fastq.gz 2.0 GB
EGAF00008478992 fastq.gz 1.9 GB
EGAF00008478993 fastq.gz 1.9 GB
EGAF00008478994 fastq.gz 2.0 GB
EGAF00008478995 fastq.gz 2.6 GB
EGAF00008478996 fastq.gz 2.6 GB
EGAF00008478997 fastq.gz 2.0 GB
EGAF00008478998 fastq.gz 2.5 GB
EGAF00008478999 fastq.gz 1.9 GB
EGAF00008479000 fastq.gz 2.5 GB
EGAF00008479001 fastq.gz 1.9 GB
EGAF00008479002 fastq.gz 1.9 GB
EGAF00008479004 fastq.gz 1.9 GB
EGAF00008479006 fastq.gz 1.9 GB
EGAF00008479009 fastq.gz 2.4 GB
EGAF00008479016 fastq.gz 2.4 GB
114 Files (263.9 GB)