About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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RNAseq profiles from the CheckMate-142 clinical trial

The dataset contains RNAseq profiles of 57 patients from the CheckMate-142 clinical trial. The Allprep DNA/RNA FFPE kit was used to simultaneously purify genomic DNA and RNA from formalin-fixed, paraffin embedded (FFPE) tissue sections. Baseline tumor tissue samples were processed using the Illumina TruSeq RNA Access in-solution hybrid capture panel and underwent subsequent NGS on the Illumina NovaSeq platform. Fastq files are included.

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DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

Requests for access the BMS accession numbers in EGA should be directed to the BMS FastTrack portal - https://fasttrack.bms.com/. This externally facing website serves as BMS’ request portal for all ISRs (both clinical and non-clinical), as well as for requests for data generated as a part of a BMS study. This portal is facilitated by BMS’ Clinical Trial Transparency organization.

Purpose Below you will find general notes and tips for when you are creating an ISR Request. General Notes and Tips • * [Asterisks] indicate a required field within the interface • You will not be able to move on to the next page if a required field is not completed • Periodically click Save (located at the bottom right corner on any form) in order to save your information. If you do not have all the information, which is necessary to submit your request, click Save and a draft will be available for you on your homepage when you are ready to return to the form. The forms do not auto-save. • FastTrack has a security time-out feature. After sixty (60) minutes of inactivity, you will be required to log back into the system. o If you are working on a record and leave it open while performing other tasks, it is recommend that you navigate to the bottom of the record and click Save to prevent you from losing data you have entered • You can return to any section of the form at any point by clicking the tabs at the top of the page or clicking Back in the lower left of the page We are committed to providing you with answers to your questions and concerns. Please contact us using the information below, and we will respond to your inquiry as quickly as possible. Technical Support Main Number: +1 844-439-5499 (US only) For Outside US, please see the “International BMS Help Desk Phone Number Guide” Main Email: hd-sci-apps@bms.com

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000416 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00008478893 fastq.gz 1.9 GB Report
EGAF00008478894 fastq.gz 1.9 GB Report
EGAF00008478895 fastq.gz 1.9 GB Report
EGAF00008478896 fastq.gz 1.9 GB Report
EGAF00008478897 fastq.gz 2.5 GB Report
EGAF00008478898 fastq.gz 1.8 GB Report
EGAF00008478899 fastq.gz 2.3 GB Report
EGAF00008478900 fastq.gz 2.6 GB Report
EGAF00008478901 fastq.gz 1.8 GB Report
EGAF00008478902 fastq.gz 2.4 GB Report
EGAF00008478903 fastq.gz 2.8 GB Report
EGAF00008478904 fastq.gz 2.9 GB Report
EGAF00008478905 fastq.gz 2.7 GB Report
EGAF00008478906 fastq.gz 2.6 GB Report
EGAF00008478907 fastq.gz 2.6 GB Report
EGAF00008478908 fastq.gz 2.7 GB Report
EGAF00008478909 fastq.gz 1.9 GB Report
EGAF00008478910 fastq.gz 2.4 GB Report
EGAF00008478911 fastq.gz 2.6 GB Report
EGAF00008478912 fastq.gz 2.6 GB Report
EGAF00008478913 fastq.gz 2.5 GB Report
EGAF00008478914 fastq.gz 2.4 GB Report
EGAF00008478915 fastq.gz 2.6 GB Report
EGAF00008478916 fastq.gz 2.0 GB Report
EGAF00008478917 fastq.gz 1.9 GB Report
EGAF00008478918 fastq.gz 2.7 GB Report
EGAF00008478919 fastq.gz 1.9 GB Report
EGAF00008478920 fastq.gz 2.5 GB Report
EGAF00008478921 fastq.gz 1.9 GB Report
EGAF00008478922 fastq.gz 2.0 GB Report
EGAF00008478923 fastq.gz 2.6 GB Report
EGAF00008478924 fastq.gz 2.9 GB Report
EGAF00008478925 fastq.gz 1.9 GB Report
EGAF00008478926 fastq.gz 2.5 GB Report
EGAF00008478927 fastq.gz 1.8 GB Report
EGAF00008478928 fastq.gz 2.1 GB Report
EGAF00008478929 fastq.gz 2.4 GB Report
EGAF00008478930 fastq.gz 2.0 GB Report
EGAF00008478931 fastq.gz 1.9 GB Report
EGAF00008478932 fastq.gz 3.0 GB Report
EGAF00008478933 fastq.gz 2.9 GB Report
EGAF00008478934 fastq.gz 2.0 GB Report
EGAF00008478935 fastq.gz 2.4 GB Report
EGAF00008478936 fastq.gz 2.1 GB Report
EGAF00008478937 fastq.gz 2.0 GB Report
EGAF00008478938 fastq.gz 1.9 GB Report
EGAF00008478939 fastq.gz 2.6 GB Report
EGAF00008478940 fastq.gz 2.0 GB Report
EGAF00008478941 fastq.gz 2.3 GB Report
EGAF00008478942 fastq.gz 2.3 GB Report
EGAF00008478943 fastq.gz 1.9 GB Report
EGAF00008478944 fastq.gz 2.4 GB Report
EGAF00008478945 fastq.gz 1.9 GB Report
EGAF00008478946 fastq.gz 2.8 GB Report
EGAF00008478947 fastq.gz 2.5 GB Report
EGAF00008478948 fastq.gz 2.5 GB Report
EGAF00008478949 fastq.gz 2.0 GB Report
EGAF00008478950 fastq.gz 2.3 GB Report
EGAF00008478951 fastq.gz 3.0 GB Report
EGAF00008478952 fastq.gz 2.5 GB Report
EGAF00008478953 fastq.gz 2.4 GB Report
EGAF00008478954 fastq.gz 2.1 GB Report
EGAF00008478955 fastq.gz 2.0 GB Report
EGAF00008478956 fastq.gz 2.4 GB Report
EGAF00008478957 fastq.gz 2.5 GB Report
EGAF00008478958 fastq.gz 2.6 GB Report
EGAF00008478959 fastq.gz 2.5 GB Report
EGAF00008478960 fastq.gz 2.2 GB Report
EGAF00008478961 fastq.gz 2.6 GB Report
EGAF00008478962 fastq.gz 2.6 GB Report
EGAF00008478963 fastq.gz 2.5 GB Report
EGAF00008478964 fastq.gz 2.0 GB Report
EGAF00008478965 fastq.gz 3.1 GB Report
EGAF00008478966 fastq.gz 2.4 GB Report
EGAF00008478967 fastq.gz 2.6 GB Report
EGAF00008478968 fastq.gz 1.9 GB Report
EGAF00008478969 fastq.gz 2.1 GB Report
EGAF00008478970 fastq.gz 3.2 GB Report
EGAF00008478971 fastq.gz 2.5 GB Report
EGAF00008478972 fastq.gz 2.6 GB Report
EGAF00008478973 fastq.gz 2.0 GB Report
EGAF00008478974 fastq.gz 2.1 GB Report
EGAF00008478975 fastq.gz 1.8 GB Report
EGAF00008478976 fastq.gz 2.7 GB Report
EGAF00008478977 fastq.gz 2.7 GB Report
EGAF00008478978 fastq.gz 2.4 GB Report
EGAF00008478979 fastq.gz 2.5 GB Report
EGAF00008478980 fastq.gz 2.5 GB Report
EGAF00008478981 fastq.gz 2.6 GB Report
EGAF00008478982 fastq.gz 2.4 GB Report
EGAF00008478983 fastq.gz 2.7 GB Report
EGAF00008478984 fastq.gz 2.1 GB Report
EGAF00008478985 fastq.gz 2.8 GB Report
EGAF00008478986 fastq.gz 1.9 GB Report
EGAF00008478987 fastq.gz 2.1 GB Report
EGAF00008478988 fastq.gz 2.4 GB Report
EGAF00008478989 fastq.gz 2.6 GB Report
EGAF00008478990 fastq.gz 1.9 GB Report
EGAF00008478991 fastq.gz 2.0 GB Report
EGAF00008478992 fastq.gz 1.9 GB Report
EGAF00008478993 fastq.gz 1.9 GB Report
EGAF00008478994 fastq.gz 2.0 GB Report
EGAF00008478995 fastq.gz 2.6 GB Report
EGAF00008478996 fastq.gz 2.6 GB Report
EGAF00008478997 fastq.gz 2.0 GB Report
EGAF00008478998 fastq.gz 2.5 GB Report
EGAF00008478999 fastq.gz 1.9 GB Report
EGAF00008479000 fastq.gz 2.5 GB Report
EGAF00008479001 fastq.gz 1.9 GB Report
EGAF00008479002 fastq.gz 1.9 GB Report
EGAF00008479004 fastq.gz 1.9 GB Report
EGAF00008479006 fastq.gz 1.9 GB Report
EGAF00008479009 fastq.gz 2.4 GB Report
EGAF00008479016 fastq.gz 2.4 GB Report
114 Files (263.9 GB)