About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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WES profiles from the CheckMate-142 clinical trial.

The dataset contains WES profiles of 59 patients from the CheckMate-142 clinical trial. The Allprep DNA/RNA FFPE kit was used to simultaneously purify genomic DNA and RNA from formalin-fixed, paraffin embedded (FFPE) tissue sections. Baseline tumor tissue and matched whole -blood samples were processed using the Agilent SureSelect Human All Exon V5 in-solution hybrid capture panel and underwent subsequent next-generation sequencing (NGS) on the Illumina NovaSeq platform. Fastq files are included.

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DUO:0000026
version: 2021-02-23

user specific restriction

This data use modifier indicates that use is limited to use by approved users.

DUO:0000027
version: 2021-02-23

project specific restriction

This data use modifier indicates that use is limited to use within an approved project.

Requests for access the BMS accession numbers in EGA should be directed to the BMS FastTrack portal - https://fasttrack.bms.com/. This externally facing website serves as BMS’ request portal for all ISRs (both clinical and non-clinical), as well as for requests for data generated as a part of a BMS study. This portal is facilitated by BMS’ Clinical Trial Transparency organization.

Purpose Below you will find general notes and tips for when you are creating an ISR Request. General Notes and Tips • * [Asterisks] indicate a required field within the interface • You will not be able to move on to the next page if a required field is not completed • Periodically click Save (located at the bottom right corner on any form) in order to save your information. If you do not have all the information, which is necessary to submit your request, click Save and a draft will be available for you on your homepage when you are ready to return to the form. The forms do not auto-save. • FastTrack has a security time-out feature. After sixty (60) minutes of inactivity, you will be required to log back into the system. o If you are working on a record and leave it open while performing other tasks, it is recommend that you navigate to the bottom of the record and click Save to prevent you from losing data you have entered • You can return to any section of the form at any point by clicking the tabs at the top of the page or clicking Back in the lower left of the page We are committed to providing you with answers to your questions and concerns. Please contact us using the information below, and we will respond to your inquiry as quickly as possible. Technical Support Main Number: +1 844-439-5499 (US only) For Outside US, please see the “International BMS Help Desk Phone Number Guide” Main Email: hd-sci-apps@bms.com

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000416 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00008479003 fastq.gz 4.3 GB Report
EGAF00008479005 fastq.gz 3.8 GB Report
EGAF00008479007 fastq.gz 4.0 GB Report
EGAF00008479008 fastq.gz 3.6 GB Report
EGAF00008479010 fastq.gz 3.5 GB Report
EGAF00008479011 fastq.gz 4.2 GB Report
EGAF00008479012 fastq.gz 4.1 GB Report
EGAF00008479013 fastq.gz 4.1 GB Report
EGAF00008479014 fastq.gz 4.1 GB Report
EGAF00008479015 fastq.gz 4.6 GB Report
EGAF00008479017 fastq.gz 4.2 GB Report
EGAF00008479018 fastq.gz 4.1 GB Report
EGAF00008479019 fastq.gz 4.0 GB Report
EGAF00008479020 fastq.gz 4.4 GB Report
EGAF00008479021 fastq.gz 4.2 GB Report
EGAF00008479022 fastq.gz 4.1 GB Report
EGAF00008479023 fastq.gz 4.3 GB Report
EGAF00008479024 fastq.gz 3.6 GB Report
EGAF00008479025 fastq.gz 4.3 GB Report
EGAF00008479026 fastq.gz 4.2 GB Report
EGAF00008479027 fastq.gz 3.7 GB Report
EGAF00008479028 fastq.gz 4.3 GB Report
EGAF00008479029 fastq.gz 4.3 GB Report
EGAF00008479030 fastq.gz 4.2 GB Report
EGAF00008479031 fastq.gz 4.9 GB Report
EGAF00008479032 fastq.gz 4.2 GB Report
EGAF00008479033 fastq.gz 4.0 GB Report
EGAF00008479034 fastq.gz 4.9 GB Report
EGAF00008479035 fastq.gz 4.7 GB Report
EGAF00008479036 fastq.gz 4.2 GB Report
EGAF00008479037 fastq.gz 4.1 GB Report
EGAF00008479038 fastq.gz 4.7 GB Report
EGAF00008479039 fastq.gz 4.4 GB Report
EGAF00008479040 fastq.gz 4.2 GB Report
EGAF00008479041 fastq.gz 3.7 GB Report
EGAF00008479042 fastq.gz 4.7 GB Report
EGAF00008479043 fastq.gz 4.9 GB Report
EGAF00008479044 fastq.gz 3.8 GB Report
EGAF00008479045 fastq.gz 4.2 GB Report
EGAF00008479046 fastq.gz 4.8 GB Report
EGAF00008479047 fastq.gz 4.2 GB Report
EGAF00008479048 fastq.gz 4.1 GB Report
EGAF00008479049 fastq.gz 4.1 GB Report
EGAF00008479050 fastq.gz 3.9 GB Report
EGAF00008479051 fastq.gz 4.5 GB Report
EGAF00008479052 fastq.gz 4.6 GB Report
EGAF00008479053 fastq.gz 3.7 GB Report
EGAF00008479054 fastq.gz 4.2 GB Report
EGAF00008479055 fastq.gz 3.8 GB Report
EGAF00008479056 fastq.gz 4.3 GB Report
EGAF00008479057 fastq.gz 3.4 GB Report
EGAF00008479058 fastq.gz 4.9 GB Report
EGAF00008479059 fastq.gz 3.6 GB Report
EGAF00008479060 fastq.gz 4.3 GB Report
EGAF00008479061 fastq.gz 4.4 GB Report
EGAF00008479062 fastq.gz 4.2 GB Report
EGAF00008479063 fastq.gz 4.5 GB Report
EGAF00008479064 fastq.gz 4.9 GB Report
EGAF00008479065 fastq.gz 5.2 GB Report
EGAF00008479066 fastq.gz 3.9 GB Report
EGAF00008479067 fastq.gz 5.2 GB Report
EGAF00008479068 fastq.gz 4.8 GB Report
EGAF00008479069 fastq.gz 4.5 GB Report
EGAF00008479070 fastq.gz 4.4 GB Report
EGAF00008479071 fastq.gz 4.0 GB Report
EGAF00008479072 fastq.gz 4.2 GB Report
EGAF00008479073 fastq.gz 3.9 GB Report
EGAF00008479074 fastq.gz 4.5 GB Report
EGAF00008479075 fastq.gz 4.6 GB Report
EGAF00008479076 fastq.gz 4.6 GB Report
EGAF00008479077 fastq.gz 4.5 GB Report
EGAF00008479078 fastq.gz 4.5 GB Report
EGAF00008479079 fastq.gz 4.3 GB Report
EGAF00008479080 fastq.gz 3.8 GB Report
EGAF00008479081 fastq.gz 4.5 GB Report
EGAF00008479082 fastq.gz 4.4 GB Report
EGAF00008479083 fastq.gz 3.9 GB Report
EGAF00008479084 fastq.gz 5.0 GB Report
EGAF00008479085 fastq.gz 4.4 GB Report
EGAF00008479086 fastq.gz 4.2 GB Report
EGAF00008479087 fastq.gz 4.6 GB Report
EGAF00008479088 fastq.gz 3.9 GB Report
EGAF00008479089 fastq.gz 4.3 GB Report
EGAF00008479090 fastq.gz 4.2 GB Report
EGAF00008479091 fastq.gz 5.1 GB Report
EGAF00008479092 fastq.gz 4.1 GB Report
EGAF00008479093 fastq.gz 4.0 GB Report
EGAF00008479094 fastq.gz 4.2 GB Report
EGAF00008479095 fastq.gz 4.3 GB Report
EGAF00008479096 fastq.gz 4.2 GB Report
EGAF00008479097 fastq.gz 4.7 GB Report
EGAF00008479098 fastq.gz 4.0 GB Report
EGAF00008479099 fastq.gz 4.2 GB Report
EGAF00008479100 fastq.gz 4.1 GB Report
EGAF00008479101 fastq.gz 4.1 GB Report
EGAF00008479102 fastq.gz 4.4 GB Report
EGAF00008479103 fastq.gz 4.4 GB Report
EGAF00008479104 fastq.gz 4.0 GB Report
EGAF00008479105 fastq.gz 4.8 GB Report
EGAF00008479106 fastq.gz 4.6 GB Report
EGAF00008479107 fastq.gz 4.2 GB Report
EGAF00008479108 fastq.gz 4.2 GB Report
EGAF00008479109 fastq.gz 3.8 GB Report
EGAF00008479110 fastq.gz 4.3 GB Report
EGAF00008479111 fastq.gz 4.0 GB Report
EGAF00008479112 fastq.gz 4.1 GB Report
EGAF00008479113 fastq.gz 4.4 GB Report
EGAF00008479114 fastq.gz 4.4 GB Report
EGAF00008479115 fastq.gz 5.0 GB Report
EGAF00008479116 fastq.gz 3.9 GB Report
EGAF00008479117 fastq.gz 4.3 GB Report
EGAF00008479118 fastq.gz 4.6 GB Report
EGAF00008479119 fastq.gz 4.1 GB Report
EGAF00008479120 fastq.gz 3.7 GB Report
EGAF00008479121 fastq.gz 4.5 GB Report
EGAF00008479122 fastq.gz 4.7 GB Report
EGAF00008479123 fastq.gz 4.6 GB Report
EGAF00008479124 fastq.gz 5.3 GB Report
EGAF00008479125 fastq.gz 4.2 GB Report
EGAF00008479126 fastq.gz 4.6 GB Report
EGAF00008479127 fastq.gz 4.1 GB Report
EGAF00008479128 fastq.gz 4.4 GB Report
EGAF00008479129 fastq.gz 4.4 GB Report
EGAF00008479130 fastq.gz 4.3 GB Report
EGAF00008479131 fastq.gz 3.9 GB Report
EGAF00008479132 fastq.gz 4.2 GB Report
EGAF00008479133 fastq.gz 4.5 GB Report
EGAF00008479134 fastq.gz 4.4 GB Report
EGAF00008479135 fastq.gz 5.1 GB Report
EGAF00008479136 fastq.gz 4.4 GB Report
EGAF00008479137 fastq.gz 5.0 GB Report
EGAF00008479138 fastq.gz 4.2 GB Report
EGAF00008479139 fastq.gz 4.6 GB Report
EGAF00008479140 fastq.gz 4.3 GB Report
EGAF00008479141 fastq.gz 4.0 GB Report
EGAF00008479142 fastq.gz 4.2 GB Report
EGAF00008479143 fastq.gz 4.3 GB Report
EGAF00008479144 fastq.gz 4.5 GB Report
EGAF00008479145 fastq.gz 5.2 GB Report
EGAF00008479146 fastq.gz 4.4 GB Report
EGAF00008479147 fastq.gz 4.2 GB Report
EGAF00008479148 fastq.gz 4.3 GB Report
EGAF00008479149 fastq.gz 4.3 GB Report
EGAF00008479150 fastq.gz 3.7 GB Report
EGAF00008479151 fastq.gz 4.6 GB Report
EGAF00008479152 fastq.gz 4.4 GB Report
EGAF00008479153 fastq.gz 3.9 GB Report
EGAF00008479154 fastq.gz 5.0 GB Report
EGAF00008479155 fastq.gz 4.5 GB Report
EGAF00008479156 fastq.gz 4.3 GB Report
EGAF00008479157 fastq.gz 4.3 GB Report
EGAF00008479158 fastq.gz 4.8 GB Report
EGAF00008479159 fastq.gz 4.3 GB Report
EGAF00008479160 fastq.gz 4.6 GB Report
EGAF00008479161 fastq.gz 4.6 GB Report
EGAF00008479162 fastq.gz 4.8 GB Report
EGAF00008479163 fastq.gz 4.2 GB Report
EGAF00008479164 fastq.gz 4.6 GB Report
EGAF00008479165 fastq.gz 4.5 GB Report
EGAF00008479166 fastq.gz 4.8 GB Report
EGAF00008479167 fastq.gz 4.0 GB Report
EGAF00008479168 fastq.gz 4.3 GB Report
EGAF00008479169 fastq.gz 3.6 GB Report
EGAF00008479170 fastq.gz 4.6 GB Report
EGAF00008479171 fastq.gz 3.7 GB Report
EGAF00008479172 fastq.gz 4.0 GB Report
EGAF00008479173 fastq.gz 4.2 GB Report
EGAF00008479174 fastq.gz 4.1 GB Report
EGAF00008479175 fastq.gz 4.2 GB Report
EGAF00008479176 fastq.gz 4.2 GB Report
EGAF00008479177 fastq.gz 4.3 GB Report
EGAF00008479178 fastq.gz 3.9 GB Report
EGAF00008479179 fastq.gz 4.0 GB Report
EGAF00008479180 fastq.gz 4.4 GB Report
EGAF00008479181 fastq.gz 4.0 GB Report
EGAF00008479182 fastq.gz 4.8 GB Report
EGAF00008479183 fastq.gz 5.1 GB Report
EGAF00008479184 fastq.gz 4.4 GB Report
EGAF00008479185 fastq.gz 4.6 GB Report
EGAF00008479186 fastq.gz 5.2 GB Report
EGAF00008479187 fastq.gz 4.1 GB Report
EGAF00008479188 fastq.gz 4.5 GB Report
EGAF00008479189 fastq.gz 4.0 GB Report
EGAF00008479190 fastq.gz 3.8 GB Report
EGAF00008479191 fastq.gz 4.1 GB Report
EGAF00008479192 fastq.gz 4.8 GB Report
EGAF00008479193 fastq.gz 4.4 GB Report
EGAF00008479194 fastq.gz 4.1 GB Report
EGAF00008479195 fastq.gz 4.2 GB Report
EGAF00008479196 fastq.gz 4.4 GB Report
EGAF00008479197 fastq.gz 5.4 GB Report
EGAF00008479198 fastq.gz 5.1 GB Report
EGAF00008479199 fastq.gz 4.0 GB Report
EGAF00008479200 fastq.gz 4.2 GB Report
EGAF00008479201 fastq.gz 4.7 GB Report
EGAF00008479202 fastq.gz 4.1 GB Report
EGAF00008479203 fastq.gz 4.5 GB Report
EGAF00008479204 fastq.gz 3.8 GB Report
EGAF00008479205 fastq.gz 4.3 GB Report
EGAF00008479206 fastq.gz 4.2 GB Report
EGAF00008479207 fastq.gz 4.2 GB Report
EGAF00008479208 fastq.gz 3.7 GB Report
EGAF00008479209 fastq.gz 4.1 GB Report
EGAF00008479210 fastq.gz 4.9 GB Report
EGAF00008479211 fastq.gz 4.2 GB Report
EGAF00008479212 fastq.gz 5.3 GB Report
EGAF00008479213 fastq.gz 4.4 GB Report
EGAF00008479214 fastq.gz 4.0 GB Report
EGAF00008479215 fastq.gz 3.8 GB Report
EGAF00008479216 fastq.gz 4.1 GB Report
EGAF00008479217 fastq.gz 4.3 GB Report
EGAF00008479218 fastq.gz 4.3 GB Report
EGAF00008479219 fastq.gz 4.2 GB Report
EGAF00008479220 fastq.gz 4.2 GB Report
EGAF00008479221 fastq.gz 4.3 GB Report
EGAF00008479222 fastq.gz 4.0 GB Report
EGAF00008479223 fastq.gz 4.0 GB Report
EGAF00008479224 fastq.gz 4.3 GB Report
EGAF00008479225 fastq.gz 4.5 GB Report
EGAF00008479226 fastq.gz 4.2 GB Report
EGAF00008479227 fastq.gz 4.5 GB Report
EGAF00008479228 fastq.gz 4.3 GB Report
EGAF00008479229 fastq.gz 3.8 GB Report
EGAF00008479230 fastq.gz 4.6 GB Report
EGAF00008479231 fastq.gz 3.8 GB Report
EGAF00008479232 fastq.gz 4.3 GB Report
EGAF00008479233 fastq.gz 4.3 GB Report
EGAF00008479234 fastq.gz 4.4 GB Report
EGAF00008479235 fastq.gz 4.7 GB Report
EGAF00008479236 fastq.gz 4.1 GB Report
EGAF00008479237 fastq.gz 4.8 GB Report
EGAF00008479238 fastq.gz 4.1 GB Report
EGAF00008479239 fastq.gz 4.1 GB Report
EGAF00008479240 fastq.gz 4.1 GB Report
EGAF00008479241 fastq.gz 4.1 GB Report
EGAF00008479242 fastq.gz 3.8 GB Report
236 Files (1.0 TB)