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Adaptive nanopore sequencing of chrX from peripheral samples

Analysis of skewed X inactivation for X-linked disorders

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Walter and Eliza Hall Institute - University of Melbourne X-linked retinal disorders

Data access is subject to having an ethics approval in place, and filling the Data Access Agreement template accessible on https://ega-archive.org/assets/files/EU-STANDS4PM_hDAA_v1.0.docx 1. You, the Data Recipient, agree to only use the Data for the Purpose of the Project. 2. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. You undertake not to use or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 3. You agree not to attempt to identify Data Subjects. 4. You and your Authorised Personnel agree to take into consideration any usage restrictions (if any), stemming from consent, i.e. the appropriate lawful basis for processing the Data, as well as any usage restrictions stemming from any applicable internal policies of your Institution. 5. You agree that in handling this Data You will follow an up-to-date information technology (IT) policy that must include, at a minimum, the following items: a. Logging and auditing of Access to the Data and to the computer network; b. Password protection to computer network and/or strong data encryption; c. Virus and malware protection to computers on the computer network; d. Secure backup procedure; 6. You acknowledge that Access to the Data is granted for the duration of the Project described in Section I, as well as any new Project under the same research field or area. Any use of the Data for a Project of another research field or area will need to be approved under a new Agreement. 7. You recognize that nothing in this Agreement shall operate to transfer to You any intellectual property rights to the Data. 8. You agree not to make intellectual property claims on the Data and not to use intellectual property protection in ways that would prevent or block Access to, or use of, any element of the Data. 9. You can elect to perform further Research that would add intellectual and resource capital to the Data, and decide to obtain intellectual property rights on these downstream discoveries. In this case, You agree to implement licensing policies that will not obstruct further Research, following the Organisation for Economic Co-operation and Development Guidelines. 10. You agree that the Research Project 1) bears no legal responsibility for the accuracy or comprehensiveness of the Data; 2) accepts no liability for indirect, consequential, or incidental damages or losses arising from use of the Data; and 3) bears no responsibility for the further analysis or interpretation of these Data over and above that published by the Controller(s). 11. You agree to hold the Data Subject(s) and Data Controller(s) harmless and to defend and indemnify all these parties against all liabilities, demands, damages, expenses, and losses arising out of Your use for any Purpose of the Data. 12. You agree to a moratorium on publishing global analyses of the dataset until the Data Controller(s) have published their own global analysis or twelve (12) months, the maximum, have passed from the time the Data were deposited, whichever occurs first. You acknowledge that prompt publication or public disclosure of the results of the Research Project is encouraged. You also agree that by publishing Your global analyses of the Data, you will not disclose any results generated from the Data. 13. You agree to acknowledge the contribution of the Data Controller(s) in all oral and written presentations, disclosures, and Publications resulting from all analyses of the Data. 14. You agree to use the Data in Your laboratory. Any Authorised Personnel shall work under Your direct supervision. You agree to distribute a copy of these terms to the Authorised Personnel. 15. You may not transfer any information included in the Data to anyone unless specifically designated in the Research Project, or by prior specific or general written authorisation of the Data Controller(s) responsible for the generation of the original Data in each case. 16. You may not transfer the Data itself to anyone outside the Institution, unless the Controller(s) has (have) approved such transfer and its terms in writing. 17. Should You wish to share the Data with an external collaborator, the external collaborator must complete a separate Data Access Agreement. 18. You shall ensure that ‘all’ who have Access to the Data, namely You and Your Authorised Personnel, will be listed out, and are made aware and be bound by the terms of this Agreement. You remain solely and fully responsible for Your Authorised Personnel’s non-compliance with the provision of the Agreement and/or applicable laws. 19. In case of a breach of security resulting from ‘accidental’ use of Data by You and Your Authorised Personnel, which leads to disclosure of Data, then You must report this to Data Controller(s) within 72 hours maximum, and follow any relevant rule as provided by the GDPR. 20. In case of a ‘non-accidental or minor’ breach of hDAA by You You will further be required to destroy any Data held. 21. You accept that this Agreement will terminate immediately upon ‘any’ breach by You, or its termination (see Section I). 22. You endeavour to settle any dispute with the Data Controller(s) amicably. If you are unable to reach an Agreement, you will meet and negotiate in good faith in an effort to resolve the issue. If the issue has not been resolved within a reasonable period (e.g. 30 calendar days), you are both entitled to submit it for resolution by an arbitrator. 23. Further, the language of the proceedings will be ‘English’ if not otherwise agreed. The award of the arbitration will be final and binding upon the parties concerned. 24. This Agreement (and any dispute, controversy, proceedings, or claim of whatever nature arising out of it or its formation) shall be interpreted, governed by and construed in accordance with the Laws of England and Wales, and shall be subject to the exclusive jurisdiction of the English Courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000440 Epigenetics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000151185 bam 2.5 GB
EGAF50000151186 bam 2.2 GB
EGAF50000151187 bam 2.5 GB
EGAF50000151188 bam 2.1 GB
EGAF50000151189 bam 4.0 GB
EGAF50000151190 bam 4.3 GB
EGAF50000151191 bam 4.1 GB
EGAF50000151192 bai 1.2 MB
EGAF50000151193 bai 1.0 MB
EGAF50000151194 bai 1.2 MB
EGAF50000151195 bai 1.0 MB
EGAF50000151196 bai 1.5 MB
EGAF50000151197 bai 1.6 MB
EGAF50000151198 bai 1.8 MB
EGAF50000151199 tsv.gz 306.4 kB
EGAF50000151200 tsv.gz 155.0 kB
EGAF50000151201 tsv.gz 1.0 kB
EGAF50000151202 tsv.gz 226.2 kB
EGAF50000151203 tsv.gz 123.2 kB
EGAF50000151204 tsv.gz 647 Bytes
EGAF50000151205 tsv.gz 303.5 kB
EGAF50000151206 tsv.gz 153.8 kB
EGAF50000151207 tsv.gz 990 Bytes
EGAF50000151208 tsv.gz 256.1 kB
EGAF50000151209 tsv.gz 123.9 kB
EGAF50000151210 tsv.gz 683 Bytes
EGAF50000151211 tsv.gz 549.9 kB
EGAF50000151212 tsv.gz 279.9 kB
EGAF50000151213 tsv.gz 2.0 kB
EGAF50000151214 tsv.gz 422.6 kB
EGAF50000151215 tsv.gz 241.8 kB
EGAF50000151216 tsv.gz 1.8 kB
EGAF50000151217 tsv.gz 331.1 kB
EGAF50000151218 tsv.gz 243.4 kB
EGAF50000151219 tsv.gz 1.5 kB
EGAF50000151220 vcf.gz 3.0 MB
EGAF50000151221 tbi 80.3 kB
EGAF50000151222 vcf.gz 2.6 MB
EGAF50000151223 tbi 80.1 kB
EGAF50000151224 tsv 42.0 kB
EGAF50000151225 tsv.gz 210.7 kB
EGAF50000151226 bam 2.1 GB
EGAF50000151227 bai 923.1 kB
EGAF50000151228 tsv.gz 101.8 kB
EGAF50000151229 tsv.gz 722 Bytes
EGAF50000151230 tsv.gz 425.7 kB
EGAF50000151231 bam 3.7 GB
EGAF50000151232 bai 1.6 MB
EGAF50000151233 tsv.gz 247.9 kB
EGAF50000151234 tsv.gz 1.8 kB
EGAF50000151235 vcf.gz 2.5 MB
EGAF50000151236 tbi 79.9 kB
EGAF50000151237 tsv 65.7 kB
EGAF50000151238 tsv.gz 209.6 kB
EGAF50000151239 bam 2.2 GB
EGAF50000151240 bai 1.0 MB
EGAF50000151241 tsv.gz 100.7 kB
EGAF50000151242 tsv.gz 565 Bytes
EGAF50000151243 tsv.gz 386.9 kB
EGAF50000151244 bam 4.0 GB
EGAF50000151245 bai 1.5 MB
EGAF50000151246 tsv.gz 226.3 kB
EGAF50000151247 tsv.gz 1.5 kB
EGAF50000151248 vcf.gz 2.6 MB
EGAF50000151249 tbi 79.9 kB
EGAF50000151250 tsv 51.1 kB
EGAF50000151251 tsv.gz 297.2 kB
EGAF50000151252 bam 3.1 GB
EGAF50000151253 bai 1.3 MB
EGAF50000151254 tsv.gz 138.8 kB
EGAF50000151255 tsv.gz 1.2 kB
EGAF50000151256 tsv.gz 313.4 kB
EGAF50000151257 bam 3.9 GB
EGAF50000151258 bai 1.8 MB
EGAF50000151259 tsv.gz 225.3 kB
EGAF50000151260 tsv.gz 1.4 kB
EGAF50000151261 vcf.gz 2.6 MB
EGAF50000151262 tbi 79.8 kB
EGAF50000151263 tsv 52.0 kB
EGAF50000151264 tsv.gz 280.1 kB
EGAF50000151265 bam 3.0 GB
EGAF50000151266 bai 1.4 MB
EGAF50000151267 tsv.gz 159.4 kB
EGAF50000151268 tsv.gz 1.4 kB
EGAF50000151269 tsv.gz 390.1 kB
EGAF50000151270 bam 3.5 GB
EGAF50000151271 bai 1.5 MB
EGAF50000151272 tsv.gz 232.2 kB
EGAF50000151273 tsv.gz 1.8 kB
EGAF50000151274 vcf.gz 2.8 MB
EGAF50000151275 tbi 80.4 kB
EGAF50000151276 tsv 52.6 kB
EGAF50000151277 tsv.gz 309.8 kB
EGAF50000151278 bam 3.1 GB
EGAF50000151279 bai 1.3 MB
EGAF50000151280 tsv.gz 173.1 kB
EGAF50000151281 tsv.gz 1.6 kB
EGAF50000151282 tsv.gz 424.5 kB
EGAF50000151283 bam 5.2 GB
EGAF50000151284 bai 2.1 MB
EGAF50000151285 tsv.gz 332.5 kB
EGAF50000151286 tsv.gz 1.5 kB
EGAF50000151287 vcf.gz 2.6 MB
EGAF50000151288 tbi 78.8 kB
EGAF50000151289 tsv 55.4 kB
EGAF50000151290 tsv.gz 275.1 kB
EGAF50000151291 bam 2.5 GB
EGAF50000151292 bai 994.6 kB
EGAF50000151293 tsv.gz 129.5 kB
EGAF50000151294 tsv.gz 977 Bytes
EGAF50000151295 tsv.gz 562.8 kB
EGAF50000151296 bam 4.6 GB
EGAF50000151297 bai 1.7 MB
EGAF50000151298 tsv.gz 289.5 kB
EGAF50000151299 tsv.gz 1.7 kB
EGAF50000151300 vcf.gz 2.7 MB
EGAF50000151301 tbi 79.9 kB
EGAF50000151302 tsv 56.3 kB
EGAF50000151303 tsv.gz 353.4 kB
EGAF50000151304 bam 3.5 GB
EGAF50000151305 bai 1.3 MB
EGAF50000151306 tsv.gz 187.2 kB
EGAF50000151307 tsv.gz 1.5 kB
EGAF50000151308 tsv.gz 506.4 kB
EGAF50000151309 bam 4.3 GB
EGAF50000151310 bai 1.7 MB
EGAF50000151311 tsv.gz 270.8 kB
EGAF50000151312 tsv.gz 1.6 kB
EGAF50000151313 vcf.gz 2.7 MB
EGAF50000151314 tbi 80.2 kB
EGAF50000151315 tsv 38.7 kB
EGAF50000151316 tsv.gz 323.5 kB
EGAF50000151317 bam 3.4 GB
EGAF50000151318 bai 1.4 MB
EGAF50000151319 tsv.gz 186.8 kB
EGAF50000151320 tsv.gz 1.6 kB
EGAF50000151321 bam 4.9 GB
EGAF50000151322 bai 2.1 MB
EGAF50000151323 vcf.gz 2.9 MB
EGAF50000151324 tbi 81.0 kB
EGAF50000151325 tsv 24.0 kB
EGAF50000151326 tsv.gz 204.7 kB
EGAF50000151327 bam 1.8 GB
EGAF50000151328 bai 899.5 kB
EGAF50000151329 tsv.gz 108.4 kB
EGAF50000151330 tsv.gz 643 Bytes
EGAF50000151331 tsv.gz 407.3 kB
EGAF50000151332 bam 3.3 GB
EGAF50000151333 bai 1.5 MB
EGAF50000151334 tsv.gz 248.7 kB
EGAF50000151335 tsv.gz 1.9 kB
EGAF50000151336 vcf.gz 2.8 MB
EGAF50000151337 tbi 79.8 kB
EGAF50000151338 tsv 36.5 kB
EGAF50000151339 tsv.gz 547.7 kB
EGAF50000151340 bam 3.5 GB
EGAF50000151341 bai 1.5 MB
EGAF50000151342 tsv.gz 243.4 kB
EGAF50000151343 tsv.gz 1.7 kB
EGAF50000151344 tsv.gz 270.5 kB
EGAF50000151345 bam 2.0 GB
EGAF50000151346 bai 861.9 kB
EGAF50000151347 tsv.gz 108.6 kB
EGAF50000151348 tsv.gz 827 Bytes
EGAF50000151349 tsv.gz 433.3 kB
EGAF50000151350 bam 4.0 GB
EGAF50000151351 bai 1.8 MB
EGAF50000151352 tsv.gz 251.2 kB
EGAF50000151353 tsv.gz 1.4 kB
EGAF50000151354 vcf.gz 2.9 MB
EGAF50000151355 tbi 80.5 kB
EGAF50000151356 tsv 29.8 kB
EGAF50000151357 tsv.gz 833.9 kB
EGAF50000151358 bam 4.9 GB
EGAF50000151359 bai 2.0 MB
EGAF50000151360 tsv.gz 345.9 kB
EGAF50000151361 tsv.gz 2.5 kB
EGAF50000151362 tsv.gz 261.9 kB
EGAF50000151363 bam 2.8 GB
EGAF50000151364 bai 959.1 kB
EGAF50000151365 tsv.gz 113.8 kB
EGAF50000151366 tsv.gz 826 Bytes
EGAF50000151367 tsv.gz 344.7 kB
EGAF50000151368 bam 2.4 GB
EGAF50000151369 bai 1.1 MB
EGAF50000151370 tsv.gz 143.7 kB
EGAF50000151371 tsv.gz 1.3 kB
EGAF50000151372 vcf.gz 2.7 MB
EGAF50000151373 tbi 79.5 kB
EGAF50000151374 tsv 68.6 kB
EGAF50000151375 tsv.gz 486.1 kB
EGAF50000151376 bam 3.4 GB
EGAF50000151377 bai 1.1 MB
EGAF50000151378 tsv.gz 209.3 kB
EGAF50000151379 tsv.gz 1.9 kB
EGAF50000151380 tsv.gz 347.2 kB
EGAF50000151381 bam 3.3 GB
EGAF50000151382 bai 1.3 MB
EGAF50000151383 tsv.gz 164.6 kB
EGAF50000151384 tsv.gz 1.4 kB
EGAF50000151385 tsv.gz 77.8 kB
EGAF50000151386 bam 1.0 GB
EGAF50000151387 bai 610.3 kB
EGAF50000151388 tsv.gz 49.7 kB
EGAF50000151389 vcf.gz 2.9 MB
EGAF50000151390 tbi 80.2 kB
EGAF50000151391 tsv 46.6 kB
EGAF50000151392 tsv.gz 464.9 kB
EGAF50000151393 bam 3.3 GB
EGAF50000151394 bai 1.2 MB
EGAF50000151395 tsv.gz 207.8 kB
EGAF50000151396 tsv.gz 1.7 kB
EGAF50000151397 tsv.gz 349.1 kB
EGAF50000151398 bam 4.4 GB
EGAF50000151399 bai 1.6 MB
EGAF50000151400 tsv.gz 237.2 kB
EGAF50000151401 tsv.gz 1.4 kB
EGAF50000151402 tsv.gz 452.7 kB
EGAF50000151403 bam 4.6 GB
EGAF50000151404 bai 2.0 MB
EGAF50000151405 tsv.gz 301.2 kB
EGAF50000151406 tsv.gz 1.8 kB
EGAF50000151407 vcf.gz 2.8 MB
EGAF50000151408 tbi 79.4 kB
EGAF50000151409 tsv 49.5 kB
EGAF50000151410 tsv.gz 621.6 kB
EGAF50000151411 bam 4.4 GB
EGAF50000151412 bai 1.5 MB
EGAF50000151413 tsv.gz 292.1 kB
EGAF50000151414 tsv.gz 2.1 kB
EGAF50000151415 tsv.gz 408.8 kB
EGAF50000151416 bam 4.3 GB
EGAF50000151417 bai 1.6 MB
EGAF50000151418 tsv.gz 246.1 kB
EGAF50000151419 tsv.gz 1.7 kB
EGAF50000151420 tsv.gz 340.3 kB
EGAF50000151421 bam 4.1 GB
EGAF50000151422 bai 1.9 MB
EGAF50000151423 tsv.gz 254.1 kB
EGAF50000151424 tsv.gz 1.6 kB
EGAF50000151425 vcf.gz 2.9 MB
EGAF50000151426 tbi 80.5 kB
EGAF50000151427 tsv 71.9 kB
EGAF50000151428 tsv.gz 548.5 kB
EGAF50000151429 bam 3.9 GB
EGAF50000151430 bai 1.2 MB
EGAF50000151431 tsv.gz 278.7 kB
EGAF50000151432 tsv.gz 2.3 kB
EGAF50000151433 tsv.gz 211.0 kB
EGAF50000151434 bam 2.6 GB
EGAF50000151435 bai 1.1 MB
EGAF50000151436 tsv.gz 121.7 kB
EGAF50000151437 tsv.gz 877 Bytes
EGAF50000151438 tsv.gz 208.2 kB
EGAF50000151439 bam 2.5 GB
EGAF50000151440 bai 1.0 MB
EGAF50000151441 tsv.gz 135.1 kB
EGAF50000151442 tsv.gz 905 Bytes
EGAF50000151443 vcf.gz 2.9 MB
EGAF50000151444 tbi 79.7 kB
EGAF50000151445 tsv 31.6 kB
EGAF50000151446 tsv.gz 625.8 kB
EGAF50000151447 bam 5.5 GB
EGAF50000151448 bai 1.9 MB
EGAF50000151449 tsv.gz 391.7 kB
EGAF50000151450 tsv.gz 2.0 kB
EGAF50000151451 tsv.gz 342.9 kB
EGAF50000151452 bam 3.9 GB
EGAF50000151453 bai 1.5 MB
EGAF50000151454 tsv.gz 218.0 kB
EGAF50000151455 tsv.gz 1.5 kB
EGAF50000151456 tsv.gz 430.5 kB
EGAF50000151457 bam 5.0 GB
EGAF50000151458 bai 2.0 MB
EGAF50000151459 tsv.gz 323.2 kB
EGAF50000151460 tsv.gz 1.6 kB
EGAF50000151461 tsv 49.1 kB
277 Files (159.7 GB)