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Whole genome and transcriptome sequencing of cancer of unknown primary tumours

Whole genome and transcriptome sequencing of cancer of unknown primary tumours was used to determine yield of clinical biomarkers for a molecular guided trial or for resolving cancer type of origin. This study includes profiling of germline DNA and tumour DNA and RNA by whole genome and transcriptome sequencing. All samples are in BAM format aligned with GRCh38 reference genome. This dataset includes: 1. Whole genome sequencing (WGS) of 78 cancer of unknown primary tumour samples and 73 matched germline DNA. 2. Whole transcriptome sequencing (WTS) of 69 cancer of unknown primary tumour samples (matched to WGS cases) 3. Whole genome sequencing of 22 cell-free DNA samples from cancer of unknown primary patients and matched Germaine DNA(8 samples matched to tumour WGS)

Request Access

University of Melbourne Cancer Research Centre (UMCCR) Data Access Committee (DAC) request form

University of Melbourne Cancer Research Centre (UMCCR) Data Access Committee (DAC) request form Email the completed form to: UMCCR-DAC@unimelb.edu.au The following form is to be used to submit an expression of interest to access data under the purview of the UMCCR-DAC and does not represent a binding data access agreement. REQUESTOR INFORMATION Graduate research student requestors must include their supervisor or a senior researcher as the Principal Investigator. Please use institutional email addresses only. Requestor Name: Job Title/Position: Department and Institution: Telephone: Email: Postal Address: Principal Investigator (if different to the Requestor) Name: Job Title/Position: Department and Institution: Telephone: Email: Postal Address: Authorised Institutional Representative Name: Job Title/Position: Institution: Telephone: Email: Postal Address: DATA REQUESTED Data description Include the EGA study and dataset accession number(s), other data identifier(s) and/or the name of the publication describing the data. Data type Is the requested data identifiable? (Whole-genome sequencing data is not considered identifiable.) ☐ Yes ☐ No PROJECT DETAILS Project description Describe the project in which the data will be used (500 words maximum). This should include specific details of the aims and what you plan to do with the data. Members of the project team requiring access to the data. Include the following information: Name Job title/position Institution Email Supervisor Feasibility Describe previous experience in this field of research and/or in similar projects by the requestor, principal investigator and other members of the project team. ETHICS APPROVAL Does this project require approval from a Human Research Ethics Committee (HREC) or comparable committee? ☐ Yes ☐ No If yes, name the HREC from which approval has been requested or obtained and attach relevant documentation (ethics application and/or approval documentation). If no, please explain why ethics approval is not required.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000452 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008477118 bai 9.2 MB
EGAF00008477157 bam 63.4 GB
EGAF00008477199 bam 70.9 GB
EGAF00008477212 bam 148.2 GB
EGAF00008477259 bai 9.3 MB
EGAF00008477317 bai 9.4 MB
EGAF00008477323 bam 8.3 GB
EGAF00008477327 bai 8.8 MB
EGAF00008477328 bai 8.2 MB
EGAF00008477329 bai 6.6 MB
EGAF00008477330 bam 17.2 GB
EGAF00008477331 bam 10.8 GB
EGAF00008477332 bai 8.1 MB
EGAF00008477333 bam 13.8 GB
EGAF00008477334 bai 8.3 MB
EGAF00008477336 bai 7.9 MB
EGAF00008477337 bam 16.6 GB
EGAF00008477339 bam 7.3 GB
EGAF00008477340 bai 7.9 MB
EGAF00008477341 bam 8.4 GB
EGAF00008477342 bai 8.2 MB
EGAF00008477343 bam 9.3 GB
EGAF00008477344 bam 8.2 GB
EGAF00008477345 bai 8.3 MB
EGAF00008477346 bam 6.4 GB
EGAF00008477347 bam 9.4 GB
EGAF00008477348 bai 8.1 MB
EGAF00008477352 bai 10.5 MB
EGAF00008477401 bam 61.3 GB
EGAF00008477402 bai 7.4 MB
EGAF00008477404 bai 9.1 MB
EGAF00008477405 bam 10.8 GB
EGAF00008477406 bai 8.2 MB
EGAF00008477407 bai 7.0 MB
EGAF00008477409 bam 11.1 GB
EGAF00008477410 bai 8.4 MB
EGAF00008477412 bai 8.0 MB
EGAF00008477413 bai 5.1 MB
EGAF00008477415 bam 9.6 GB
EGAF00008477416 bai 8.2 MB
EGAF00008477417 bam 12.9 GB
EGAF00008477418 bai 7.5 MB
EGAF00008477419 bam 8.3 GB
EGAF00008477420 bai 8.2 MB
EGAF00008477423 bam 93.9 GB
EGAF00008477424 bai 7.8 MB
EGAF00008477425 bam 11.3 GB
EGAF00008477426 bai 8.5 MB
EGAF00008477427 bai 6.6 MB
EGAF00008477428 bai 8.6 MB
EGAF00008477429 bam 7.7 GB
EGAF00008477430 bai 7.9 MB
EGAF00008477431 bam 15.9 GB
EGAF00008477435 bai 7.5 MB
EGAF00008477436 bam 9.1 GB
EGAF00008477437 bam 10.3 GB
EGAF00008477438 bai 8.1 MB
EGAF00008477439 bai 7.3 MB
EGAF00008477440 bam 10.7 GB
EGAF00008477443 bai 9.1 MB
EGAF00008477444 bai 7.7 MB
EGAF00008477445 bai 7.0 MB
EGAF00008477446 bai 7.6 MB
EGAF00008477447 bai 7.4 MB
EGAF00008477452 bai 7.8 MB
EGAF00008477453 bai 7.5 MB
EGAF00008477454 bai 8.3 MB
EGAF00008477455 bam 8.1 GB
EGAF00008477457 bam 8.4 GB
EGAF00008477458 bam 7.5 GB
EGAF00008477459 bai 7.7 MB
EGAF00008477460 bai 7.3 MB
EGAF00008477461 bai 8.0 MB
EGAF00008477462 bai 8.5 MB
EGAF00008477463 bam 7.2 GB
EGAF00008477465 bam 8.2 GB
EGAF00008477466 bam 6.2 GB
EGAF00008477473 bai 10.3 MB
EGAF00008477474 bam 9.3 GB
EGAF00008477475 bam 135.4 GB
EGAF00008477477 bai 9.2 MB
EGAF00008477480 bai 8.2 MB
EGAF00008477481 bai 7.9 MB
EGAF00008477482 bam 8.1 GB
EGAF00008477484 bam 9.3 GB
EGAF00008477486 bai 9.8 MB
EGAF00008477489 bam 6.2 GB
EGAF00008477490 bam 9.9 GB
EGAF00008477491 bam 10.7 GB
EGAF00008477494 bam 7.6 GB
EGAF00008477495 bam 6.1 GB
EGAF00008477496 bam 12.4 GB
EGAF00008477498 bam 12.3 GB
EGAF00008477504 bam 15.9 GB
EGAF00008477505 bai 8.3 MB
EGAF00008477507 bai 7.7 MB
EGAF00008477513 bam 9.1 GB
EGAF00008477514 bam 13.1 GB
EGAF00008477516 bai 8.2 MB
EGAF00008477517 bai 7.6 MB
EGAF00008477519 bam 68.7 GB
EGAF00008477520 bai 7.8 MB
EGAF00008477521 bai 8.7 MB
EGAF00008477522 bam 7.7 GB
EGAF00008477527 bai 9.8 MB
EGAF00008477528 bai 7.5 MB
EGAF00008477529 bam 10.1 GB
EGAF00008477531 bam 12.8 GB
EGAF00008477532 bam 18.2 GB
EGAF00008477533 bam 9.3 GB
EGAF00008477534 bam 7.8 GB
EGAF00008477535 bam 9.1 GB
EGAF00008477536 bam 128.8 GB
EGAF00008477538 bai 7.9 MB
EGAF00008477539 bai 8.1 MB
EGAF00008477541 bai 7.6 MB
EGAF00008477542 bam 171.2 GB
EGAF00008477544 bam 9.4 GB
EGAF00008477551 bam 8.6 GB
EGAF00008477552 bam 10.5 GB
EGAF00008477553 bam 11.8 GB
EGAF00008477554 bam 9.8 GB
EGAF00008477568 bam 6.2 GB
EGAF00008477569 bam 7.8 GB
EGAF00008477570 bam 8.1 GB
EGAF00008477571 bam 8.4 GB
EGAF00008477573 bam 16.6 GB
EGAF00008477574 bai 8.8 MB
EGAF00008477575 bam 16.7 GB
EGAF00008477576 bam 13.4 GB
EGAF00008477583 bai 7.6 MB
EGAF00008477593 bai 7.6 MB
EGAF00008477594 bai 8.2 MB
EGAF00008477598 bai 8.9 MB
EGAF00008477601 bai 8.6 MB
EGAF00008477611 bai 9.2 MB
EGAF00008477614 bai 7.9 MB
EGAF00008478808 bai 9.6 MB
EGAF00008478809 bai 10.2 MB
EGAF00008478810 bai 9.3 MB
EGAF00008478811 bai 9.8 MB
EGAF00008478812 bai 9.5 MB
EGAF00008478813 bai 10.8 MB
EGAF00008478814 bai 9.5 MB
EGAF00008478815 bai 10.5 MB
EGAF00008478816 bai 10.3 MB
EGAF00008478817 bai 9.6 MB
EGAF00008478818 bai 10.8 MB
EGAF00008478819 bai 10.7 MB
EGAF00008478820 bai 9.4 MB
EGAF00008478824 bam 7.2 GB
EGAF00008478826 bam 59.4 GB
EGAF00008478827 bai 10.8 MB
EGAF00008478828 bam 70.0 GB
EGAF00008478830 bai 10.7 MB
EGAF00008478831 bam 88.9 GB
EGAF00008478832 bai 10.7 MB
EGAF00008478833 bai 9.5 MB
EGAF00008478837 bam 102.1 GB
EGAF00008478838 bam 137.4 GB
EGAF00008478839 bam 76.5 GB
EGAF00008478841 bam 155.6 GB
EGAF00008478842 bam 172.9 GB
EGAF00008478843 bam 152.4 GB
EGAF00008478845 bam 180.7 GB
EGAF00008478846 bai 9.4 MB
EGAF00008478847 bam 199.5 GB
EGAF00008478848 bai 9.5 MB
EGAF00008478849 bam 65.8 GB
EGAF00008478850 bam 73.2 GB
EGAF00008478851 bai 9.3 MB
EGAF00008478853 bam 195.3 GB
EGAF00008478857 bai 10.7 MB
EGAF00008478858 bam 61.3 GB
EGAF00008478859 bam 209.8 GB
EGAF00008478860 bam 161.5 GB
EGAF00008478861 bai 7.5 MB
EGAF00008478862 bam 63.8 GB
EGAF00008478864 bam 100.6 GB
EGAF00008478865 bai 10.4 MB
EGAF00008478866 bai 9.3 MB
EGAF00008478871 bai 9.2 MB
EGAF00008478872 bai 9.1 MB
EGAF00008478873 bai 9.9 MB
EGAF00008478874 bai 9.4 MB
EGAF00008478876 bam 58.3 GB
EGAF00008478877 bai 9.6 MB
EGAF00008478878 bam 58.5 GB
EGAF00008478879 bam 51.6 GB
EGAF00008478880 bam 168.8 GB
EGAF00008478881 bam 161.2 GB
EGAF00008478882 bam 72.7 GB
EGAF00008478883 bai 9.7 MB
EGAF00008478884 bai 9.2 MB
EGAF00008478885 bam 123.9 GB
EGAF00008478888 bam 148.3 GB
EGAF00008478889 bam 140.5 GB
EGAF00008478890 bai 9.8 MB
EGAF00008478892 bam 135.4 GB
EGAF00008481050 bai 9.5 MB
EGAF00008481051 bai 9.3 MB
EGAF00008481052 bai 9.4 MB
EGAF00008481053 bai 9.9 MB
EGAF00008481054 bai 9.2 MB
EGAF00008481055 bai 9.2 MB
EGAF00008481056 bai 11.4 MB
EGAF00008481057 bai 9.6 MB
EGAF00008481058 bai 9.6 MB
EGAF00008481059 bai 9.5 MB
EGAF00008481062 bai 9.7 MB
EGAF00008481063 bai 9.2 MB
EGAF00008481064 bai 9.8 MB
EGAF00008481065 bai 10.0 MB
EGAF00008481066 bai 9.2 MB
EGAF00008481067 bai 9.9 MB
EGAF00008481068 bai 10.3 MB
EGAF00008481069 bai 9.8 MB
EGAF00008481070 bai 9.4 MB
EGAF00008481071 bam 57.0 GB
EGAF00008481072 bam 62.9 GB
EGAF00008481073 bai 9.4 MB
EGAF00008481074 bam 70.1 GB
EGAF00008481075 bam 66.1 GB
EGAF00008481076 bam 78.5 GB
EGAF00008481077 bai 9.8 MB
EGAF00008481079 bam 94.9 GB
EGAF00008481080 bam 111.3 GB
EGAF00008481081 bam 126.4 GB
EGAF00008481082 bam 89.5 GB
EGAF00008481083 bam 131.7 GB
EGAF00008481084 bam 139.7 GB
EGAF00008481085 bai 9.7 MB
EGAF00008481086 bai 9.7 MB
EGAF00008481087 bam 143.5 GB
EGAF00008481088 bai 9.6 MB
EGAF00008481089 bam 134.9 GB
EGAF00008481090 bam 141.7 GB
EGAF00008481091 bam 104.8 GB
EGAF00008481092 bai 11.1 MB
EGAF00008481093 bai 9.3 MB
EGAF00008481094 bam 168.7 GB
EGAF00008481095 bai 9.4 MB
EGAF00008481096 bai 9.2 MB
EGAF00008481097 bam 80.9 GB
EGAF00008481098 bai 9.7 MB
EGAF00008481099 bam 67.1 GB
EGAF00008481100 bam 151.3 GB
EGAF00008481101 bai 9.4 MB
EGAF00008481102 bam 196.9 GB
EGAF00008481103 bam 193.1 GB
EGAF00008481104 bai 9.9 MB
EGAF00008481105 bam 106.4 GB
EGAF00008481106 bai 10.0 MB
EGAF00008481107 bam 103.5 GB
EGAF00008481108 bam 139.5 GB
EGAF00008481110 bam 137.6 GB
EGAF00008481111 bam 144.7 GB
EGAF00008481112 bam 145.9 GB
EGAF00008481113 bam 231.5 GB
EGAF00008481114 bam 58.8 GB
EGAF00008481115 bam 135.9 GB
EGAF00008481116 bam 165.6 GB
EGAF00008481117 bam 304.3 GB
EGAF00008481118 bai 10.2 MB
EGAF00008481119 bam 174.2 GB
EGAF00008481120 bam 119.5 GB
EGAF00008481122 bai 9.9 MB
EGAF00008481123 bam 262.7 GB
EGAF00008481124 bai 9.2 MB
EGAF00008481126 bai 9.9 MB
EGAF00008481127 bai 9.6 MB
EGAF00008481128 bai 10.2 MB
EGAF00008481129 bai 9.2 MB
EGAF00008481130 bai 9.3 MB
EGAF00008481131 bai 9.3 MB
EGAF00008481132 bai 9.9 MB
EGAF00008481133 bai 9.4 MB
EGAF00008481134 bai 9.8 MB
EGAF00008481135 bai 9.8 MB
EGAF00008481136 bai 9.7 MB
EGAF00008481137 bai 10.0 MB
EGAF00008481138 bam 58.9 GB
EGAF00008481139 bai 10.2 MB
EGAF00008481140 bam 66.5 GB
EGAF00008481141 bai 9.9 MB
EGAF00008481142 bam 68.1 GB
EGAF00008481143 bam 71.3 GB
EGAF00008481144 bai 9.6 MB
EGAF00008481145 bam 83.0 GB
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EGAF00008481147 bai 9.7 MB
EGAF00008481148 bam 92.2 GB
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EGAF00008481150 bai 9.4 MB
EGAF00008481151 bam 142.1 GB
EGAF00008481152 bam 156.8 GB
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EGAF00008481169 bam 191.5 GB
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EGAF00008481241 bai 9.5 MB
EGAF00008481242 bai 9.4 MB
EGAF00008481244 bai 9.4 MB
EGAF00008481245 bai 11.1 MB
EGAF00008481246 bam 64.6 GB
EGAF00008481247 bam 76.1 GB
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EGAF00008481249 bam 88.5 GB
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EGAF00008481254 bai 10.0 MB
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EGAF00008481258 bam 112.0 GB
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EGAF00008481262 bai 11.8 MB
EGAF00008481266 bam 161.7 GB
EGAF00008481267 bai 9.4 MB
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EGAF00008481281 bai 9.4 MB
EGAF00008481282 bam 188.0 GB
EGAF00008481284 bam 212.8 GB
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EGAF00008481975 bai 9.3 MB
EGAF00008481976 bai 9.8 MB
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EGAF00008481979 bai 10.0 MB
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EGAF00008482015 bam 249.0 GB
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EGAF00008482038 bam 250.6 GB
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EGAF00008483486 bam 69.3 GB
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EGAF00008483771 bai 10.1 MB
EGAF00008483904 bam 81.1 GB
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EGAF00008484029 bam 172.7 GB
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EGAF00008485060 bai 10.3 MB
EGAF00008485168 bam 174.8 GB
EGAF00008485169 bai 10.4 MB
EGAF00008485182 bam 181.5 GB
EGAF00008485185 bam 187.9 GB
EGAF00008485191 bam 199.6 GB
EGAF00008485197 bam 223.9 GB
EGAF00008485204 bai 10.0 MB
EGAF00008485211 bam 208.6 GB
EGAF00008485219 bai 9.8 MB
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EGAF00008485230 bai 9.2 MB
EGAF00008485231 bai 9.3 MB
EGAF00008485232 bam 61.8 GB
EGAF00008485233 bai 9.3 MB
EGAF00008485234 bam 69.3 GB
EGAF00008485235 bam 81.9 GB
EGAF00008485236 bam 88.1 GB
EGAF00008485237 bai 9.3 MB
EGAF00008485238 bam 77.4 GB
EGAF00008485239 bam 132.3 GB
EGAF00008485240 bam 106.3 GB
EGAF00008485241 bam 82.0 GB
EGAF00008485242 bam 204.5 GB
EGAF00008485243 bai 9.3 MB
EGAF00008485244 bam 198.8 GB
EGAF00008485245 bam 219.8 GB
EGAF00008485246 bai 10.5 MB
EGAF00008485247 bam 183.4 GB
EGAF00008485248 bam 227.4 GB
EGAF00008485249 bai 10.1 MB
EGAF00008485250 bam 239.7 GB
EGAF00008485251 bam 80.9 GB
EGAF00008485252 bam 84.4 GB
EGAF00008485253 bam 81.5 GB
EGAF00008485254 bai 9.3 MB
EGAF00008485255 bam 124.5 GB
EGAF00008485256 bai 9.3 MB
EGAF00008485257 bam 79.9 GB
EGAF00008485258 bam 69.5 GB
EGAF00008485259 bam 219.4 GB
EGAF00008485260 bai 9.4 MB
EGAF00008485261 bam 71.2 GB
EGAF50000157007 bam 200.9 GB
EGAF50000157008 bam 11.5 GB
EGAF50000157009 bai 8.3 MB
EGAF50000157010 bam 8.2 GB
EGAF50000157011 bai 7.5 MB
EGAF50000157012 bam 13.6 GB
EGAF50000157013 bai 8.3 MB
EGAF50000157014 bam 12.8 GB
EGAF50000157015 bai 8.4 MB
EGAF50000157016 bam 10.3 GB
EGAF50000157017 bai 7.7 MB
EGAF50000157018 bam 12.2 GB
EGAF50000157019 bai 8.5 MB
EGAF50000157020 bam 9.1 GB
EGAF50000157021 bai 8.0 MB
EGAF50000157022 bam 11.0 GB
EGAF50000157023 bai 7.9 MB
528 Files (27.2 TB)