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As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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Transcriptome analysis of human iPSC-derived microglia in a novel human 3D cortical tissue model

scRNA-seq analysis of human iPSC-derived microglia in a novel, human in vitro 3D cortical tissue model. Samples include three distinct conditions (each as biological duplicates): wild-type microglia extracted from cultures after 1 month (WT_1mo) and 3 months (WT_3mo) of culturing, as well as knock-in microglia extracted from cultures carrying three familial AD mutations in the APP gene (Swedish, Iberian, Arctic; introduced by CRISPR/Cas9-mediated knock-in) after 3 months of culturing (KI_3mo).

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Policy for "Transcriptome analysis of human iPSC-derived microglia in a novel human 3D cortical tissue model"

Access to generated data is made available by completing the data access agreement for review by the data access committee and will be granted exclusively to qualified investigators for appropriate use.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000469 Transcriptome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000158840 csv 356 Bytes
EGAF50000158841 fastq.gz 53.1 GB
EGAF50000158842 fastq.gz 48.8 GB
EGAF50000158843 fastq.gz 55.7 GB
EGAF50000158844 fastq.gz 51.0 GB
EGAF50000158845 fastq.gz 46.6 GB
EGAF50000158846 fastq.gz 42.6 GB
EGAF50000158847 fastq.gz 1.3 GB
EGAF50000158848 fastq.gz 1.2 GB
EGAF50000158849 fastq.gz 1.2 GB
EGAF50000158850 fastq.gz 1.2 GB
EGAF50000158851 fastq.gz 1.2 GB
EGAF50000158852 fastq.gz 1.1 GB
13 Files (305.1 GB)