RNA-Seq of human longitudinal whole blood samples from PCR-positive and PCR-negative recent household contacts of COVID-19 index cases.
Little is known about the transcriptomic profile of individuals who are exposed to SARS-CoV-2 yet resist becoming PCR positive. To investigate this, longitudinal whole-blood samples were taken (0, 7, 14, and 28 days after enrolment) from PCR positive and PCR negative SARS-CoV-2-naïve household contacts who were recently exposed to a COVID-19 index. Samples were also taken from pre- and post-pandemic unexposed controls. Total RNA was extracted from PAXgene tubes before undergoing poly(A) selection followed by globin and rRNA depletion. DNA libraries were constructed using the NEBNext® Ultra™ II Directional RNA Library Prep Kit for Illumina. All samples were then sequenced across 2 flowcells of an Illumina HiSeq 4000.
- 04/09/2024
- 144 samples
- DAC: EGAC50000000307
- Technology: Illumina HiSeq 4000
Data is available upon reasonable request to the data access committee (Prof. Ajit Lalvani, Dr Joe Fenn and Mr Kieran Madon), Imperial College London).
Data is available upon reasonable request to the data access committee (Prof. Ajit Lalvani, Dr Joe Fenn and Mr Kieran Madon, Imperial College London). Investigators will be asked to provide a short summary of how they wish to use the data in their research prior to granting access.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000473 | RNASeq |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF50000162653 | fastq.gz | 1.4 GB | ||
| EGAF50000162654 | fastq.gz | 530.8 MB | ||
| EGAF50000162655 | fastq.gz | 1.1 GB | ||
| EGAF50000162656 | fastq.gz | 1.2 GB | ||
| EGAF50000162657 | fastq.gz | 1.2 GB | ||
| EGAF50000162658 | fastq.gz | 1.3 GB | ||
| EGAF50000162659 | fastq.gz | 1.1 GB | ||
| EGAF50000162660 | fastq.gz | 1.1 GB | ||
| EGAF50000162661 | fastq.gz | 1.4 GB | ||
| EGAF50000162662 | fastq.gz | 1.4 GB | ||
| EGAF50000162663 | fastq.gz | 973.0 MB | ||
| EGAF50000162664 | fastq.gz | 1.0 GB | ||
| EGAF50000162665 | fastq.gz | 1.1 GB | ||
| EGAF50000162666 | fastq.gz | 1.1 GB | ||
| EGAF50000162667 | fastq.gz | 1.2 GB | ||
| EGAF50000162668 | fastq.gz | 1.3 GB | ||
| EGAF50000162669 | fastq.gz | 1.2 GB | ||
| EGAF50000162670 | fastq.gz | 1.3 GB | ||
| EGAF50000162671 | fastq.gz | 1.5 GB | ||
| EGAF50000162672 | fastq.gz | 1.7 GB | ||
| EGAF50000162673 | fastq.gz | 1.2 GB | ||
| EGAF50000162674 | fastq.gz | 1.3 GB | ||
| EGAF50000162675 | fastq.gz | 1.0 GB | ||
| EGAF50000162676 | fastq.gz | 1.1 GB | ||
| EGAF50000162677 | fastq.gz | 1.3 GB | ||
| EGAF50000162678 | fastq.gz | 1.4 GB | ||
| EGAF50000162679 | fastq.gz | 2.3 GB | ||
| EGAF50000162680 | fastq.gz | 2.0 GB | ||
| EGAF50000162681 | fastq.gz | 1.1 GB | ||
| EGAF50000162682 | fastq.gz | 1.2 GB | ||
| EGAF50000162683 | fastq.gz | 1.2 GB | ||
| EGAF50000162684 | fastq.gz | 1.3 GB | ||
| EGAF50000162685 | fastq.gz | 1.2 GB | ||
| EGAF50000162686 | fastq.gz | 1.3 GB | ||
| EGAF50000162687 | fastq.gz | 1.6 GB | ||
| EGAF50000162688 | fastq.gz | 1.7 GB | ||
| EGAF50000162689 | fastq.gz | 1.2 GB | ||
| EGAF50000162690 | fastq.gz | 1.3 GB | ||
| EGAF50000162691 | fastq.gz | 2.8 GB | ||
| EGAF50000162692 | fastq.gz | 1.3 GB | ||
| EGAF50000162693 | fastq.gz | 2.9 GB | ||
| EGAF50000162694 | fastq.gz | 1.1 GB | ||
| EGAF50000162695 | fastq.gz | 1.4 GB | ||
| EGAF50000162696 | fastq.gz | 1.2 GB | ||
| EGAF50000162697 | fastq.gz | 1.7 GB | ||
| EGAF50000162698 | fastq.gz | 1.8 GB | ||
| EGAF50000162699 | fastq.gz | 1.5 GB | ||
| EGAF50000162700 | fastq.gz | 1.5 GB | ||
| EGAF50000162701 | fastq.gz | 1.3 GB | ||
| EGAF50000162702 | fastq.gz | 1.4 GB | ||
| EGAF50000162703 | fastq.gz | 1.6 GB | ||
| EGAF50000162704 | fastq.gz | 1.6 GB | ||
| EGAF50000162705 | fastq.gz | 1.2 GB | ||
| EGAF50000162706 | fastq.gz | 1.2 GB | ||
| EGAF50000162707 | fastq.gz | 1.4 GB | ||
| EGAF50000162708 | fastq.gz | 1.4 GB | ||
| EGAF50000162709 | fastq.gz | 1.1 GB | ||
| EGAF50000162710 | fastq.gz | 1.8 GB | ||
| EGAF50000162711 | fastq.gz | 1.2 GB | ||
| EGAF50000162712 | fastq.gz | 1.2 GB | ||
| EGAF50000162713 | fastq.gz | 1.3 GB | ||
| EGAF50000162714 | fastq.gz | 1.3 GB | ||
| EGAF50000162715 | fastq.gz | 1.4 GB | ||
| EGAF50000162716 | fastq.gz | 1.3 GB | ||
| EGAF50000162717 | fastq.gz | 1.3 GB | ||
| EGAF50000162718 | fastq.gz | 1.1 GB | ||
| EGAF50000162719 | fastq.gz | 1.1 GB | ||
| EGAF50000162720 | fastq.gz | 1.3 GB | ||
| EGAF50000162721 | fastq.gz | 1.3 GB | ||
| EGAF50000162722 | fastq.gz | 1.2 GB | ||
| EGAF50000162723 | fastq.gz | 1.3 GB | ||
| EGAF50000162724 | fastq.gz | 1.1 GB | ||
| EGAF50000162725 | fastq.gz | 1.0 GB | ||
| EGAF50000162726 | fastq.gz | 1.2 GB | ||
| EGAF50000162727 | fastq.gz | 917.2 MB | ||
| EGAF50000162728 | fastq.gz | 1.0 GB | ||
| EGAF50000162729 | fastq.gz | 961.6 MB | ||
| EGAF50000162730 | fastq.gz | 1.5 GB | ||
| EGAF50000162731 | fastq.gz | 1.6 GB | ||
| EGAF50000162732 | fastq.gz | 1.3 GB | ||
| EGAF50000162733 | fastq.gz | 1.3 GB | ||
| EGAF50000162734 | fastq.gz | 1.2 GB | ||
| EGAF50000162735 | fastq.gz | 1.3 GB | ||
| EGAF50000162736 | fastq.gz | 1.2 GB | ||
| EGAF50000162737 | fastq.gz | 1.3 GB | ||
| EGAF50000162738 | fastq.gz | 1.5 GB | ||
| EGAF50000162739 | fastq.gz | 1.6 GB | ||
| EGAF50000162740 | fastq.gz | 1.4 GB | ||
| EGAF50000162741 | fastq.gz | 1.0 GB | ||
| EGAF50000162742 | fastq.gz | 1.5 GB | ||
| EGAF50000162743 | fastq.gz | 1.1 GB | ||
| EGAF50000162744 | fastq.gz | 1.3 GB | ||
| EGAF50000162745 | fastq.gz | 1.4 GB | ||
| EGAF50000162746 | fastq.gz | 1.5 GB | ||
| EGAF50000162747 | fastq.gz | 1.6 GB | ||
| EGAF50000162748 | fastq.gz | 1.3 GB | ||
| EGAF50000162749 | fastq.gz | 1.4 GB | ||
| EGAF50000162750 | fastq.gz | 1.3 GB | ||
| EGAF50000162751 | fastq.gz | 1.2 GB | ||
| EGAF50000162752 | fastq.gz | 1.4 GB | ||
| EGAF50000162753 | fastq.gz | 1.1 GB | ||
| EGAF50000162754 | fastq.gz | 1.2 GB | ||
| EGAF50000162755 | fastq.gz | 918.9 MB | ||
| EGAF50000162756 | fastq.gz | 1.1 GB | ||
| EGAF50000162757 | fastq.gz | 955.4 MB | ||
| EGAF50000162758 | fastq.gz | 1.5 GB | ||
| EGAF50000162759 | fastq.gz | 1.5 GB | ||
| EGAF50000162760 | fastq.gz | 1.8 GB | ||
| EGAF50000162761 | fastq.gz | 1.9 GB | ||
| EGAF50000162762 | fastq.gz | 1.4 GB | ||
| EGAF50000162763 | fastq.gz | 1.5 GB | ||
| EGAF50000162764 | fastq.gz | 1.2 GB | ||
| EGAF50000162765 | fastq.gz | 1.3 GB | ||
| EGAF50000162766 | fastq.gz | 1.3 GB | ||
| EGAF50000162767 | fastq.gz | 1.4 GB | ||
| EGAF50000162768 | fastq.gz | 1.3 GB | ||
| EGAF50000162769 | fastq.gz | 1.4 GB | ||
| EGAF50000162770 | fastq.gz | 1.3 GB | ||
| EGAF50000162771 | fastq.gz | 1.4 GB | ||
| EGAF50000162772 | fastq.gz | 1.6 GB | ||
| EGAF50000162773 | fastq.gz | 1.7 GB | ||
| EGAF50000162774 | fastq.gz | 1.3 GB | ||
| EGAF50000162775 | fastq.gz | 1.4 GB | ||
| EGAF50000162776 | fastq.gz | 1.1 GB | ||
| EGAF50000162777 | fastq.gz | 1.2 GB | ||
| EGAF50000162778 | fastq.gz | 1.3 GB | ||
| EGAF50000162779 | fastq.gz | 1.4 GB | ||
| EGAF50000162780 | fastq.gz | 1.2 GB | ||
| EGAF50000162781 | fastq.gz | 1.2 GB | ||
| EGAF50000162782 | fastq.gz | 1.1 GB | ||
| EGAF50000162783 | fastq.gz | 1.1 GB | ||
| EGAF50000162784 | fastq.gz | 1.2 GB | ||
| EGAF50000162785 | fastq.gz | 1.1 GB | ||
| EGAF50000162786 | fastq.gz | 1.3 GB | ||
| EGAF50000162787 | fastq.gz | 1.1 GB | ||
| EGAF50000162788 | fastq.gz | 1.6 GB | ||
| EGAF50000162789 | fastq.gz | 1.7 GB | ||
| EGAF50000162790 | fastq.gz | 1.3 GB | ||
| EGAF50000162791 | fastq.gz | 1.4 GB | ||
| EGAF50000162792 | fastq.gz | 1.1 GB | ||
| EGAF50000162793 | fastq.gz | 1.2 GB | ||
| EGAF50000162794 | fastq.gz | 1.3 GB | ||
| EGAF50000162795 | fastq.gz | 1.4 GB | ||
| EGAF50000162796 | fastq.gz | 1.4 GB | ||
| EGAF50000162797 | fastq.gz | 1.5 GB | ||
| EGAF50000162798 | fastq.gz | 1.3 GB | ||
| EGAF50000162799 | fastq.gz | 1.3 GB | ||
| EGAF50000162800 | fastq.gz | 1.4 GB | ||
| EGAF50000162801 | fastq.gz | 1.5 GB | ||
| EGAF50000162802 | fastq.gz | 1.4 GB | ||
| EGAF50000162803 | fastq.gz | 1.5 GB | ||
| EGAF50000162804 | fastq.gz | 1.3 GB | ||
| EGAF50000162805 | fastq.gz | 1.3 GB | ||
| EGAF50000162806 | fastq.gz | 1.4 GB | ||
| EGAF50000162807 | fastq.gz | 1.5 GB | ||
| EGAF50000162808 | fastq.gz | 1.3 GB | ||
| EGAF50000162809 | fastq.gz | 1.4 GB | ||
| EGAF50000162810 | fastq.gz | 1.2 GB | ||
| EGAF50000162811 | fastq.gz | 1.3 GB | ||
| EGAF50000162812 | fastq.gz | 1.3 GB | ||
| EGAF50000162813 | fastq.gz | 1.4 GB | ||
| EGAF50000162814 | fastq.gz | 1.3 GB | ||
| EGAF50000162815 | fastq.gz | 1.4 GB | ||
| EGAF50000162816 | fastq.gz | 1.2 GB | ||
| EGAF50000162817 | fastq.gz | 1.3 GB | ||
| EGAF50000162818 | fastq.gz | 1.7 GB | ||
| EGAF50000162819 | fastq.gz | 1.0 GB | ||
| EGAF50000162820 | fastq.gz | 1.7 GB | ||
| EGAF50000162821 | fastq.gz | 1.1 GB | ||
| EGAF50000162822 | fastq.gz | 1.2 GB | ||
| EGAF50000162823 | fastq.gz | 1.3 GB | ||
| EGAF50000162824 | fastq.gz | 1.4 GB | ||
| EGAF50000162825 | fastq.gz | 1.5 GB | ||
| EGAF50000162826 | fastq.gz | 1.4 GB | ||
| EGAF50000162827 | fastq.gz | 1.5 GB | ||
| EGAF50000162828 | fastq.gz | 1.3 GB | ||
| EGAF50000162829 | fastq.gz | 1.4 GB | ||
| EGAF50000162830 | fastq.gz | 1.1 GB | ||
| EGAF50000162831 | fastq.gz | 1.2 GB | ||
| EGAF50000162832 | fastq.gz | 1.1 GB | ||
| EGAF50000162833 | fastq.gz | 1.1 GB | ||
| EGAF50000162834 | fastq.gz | 1.1 GB | ||
| EGAF50000162835 | fastq.gz | 1.2 GB | ||
| EGAF50000162836 | fastq.gz | 1.0 GB | ||
| EGAF50000162837 | fastq.gz | 1.1 GB | ||
| EGAF50000162838 | fastq.gz | 1.2 GB | ||
| EGAF50000162839 | fastq.gz | 1.3 GB | ||
| EGAF50000162840 | fastq.gz | 1.1 GB | ||
| EGAF50000162841 | fastq.gz | 1.2 GB | ||
| EGAF50000162842 | fastq.gz | 1.3 GB | ||
| EGAF50000162843 | fastq.gz | 1.3 GB | ||
| EGAF50000162844 | fastq.gz | 1.1 GB | ||
| EGAF50000162845 | fastq.gz | 1.2 GB | ||
| EGAF50000162846 | fastq.gz | 1.0 GB | ||
| EGAF50000162847 | fastq.gz | 1.1 GB | ||
| EGAF50000162848 | fastq.gz | 1.3 GB | ||
| EGAF50000162849 | fastq.gz | 977.3 MB | ||
| EGAF50000162850 | fastq.gz | 1.3 GB | ||
| EGAF50000162851 | fastq.gz | 1.1 GB | ||
| EGAF50000162852 | fastq.gz | 1.4 GB | ||
| EGAF50000162853 | fastq.gz | 1.5 GB | ||
| EGAF50000162854 | fastq.gz | 1.3 GB | ||
| EGAF50000162855 | fastq.gz | 1.1 GB | ||
| EGAF50000162856 | fastq.gz | 1.4 GB | ||
| EGAF50000162857 | fastq.gz | 1.2 GB | ||
| EGAF50000162858 | fastq.gz | 1.3 GB | ||
| EGAF50000162859 | fastq.gz | 1.4 GB | ||
| EGAF50000162860 | fastq.gz | 1.2 GB | ||
| EGAF50000162861 | fastq.gz | 1.1 GB | ||
| EGAF50000162862 | fastq.gz | 1.2 GB | ||
| EGAF50000162863 | fastq.gz | 1.2 GB | ||
| EGAF50000162864 | fastq.gz | 1.1 GB | ||
| EGAF50000162865 | fastq.gz | 1.2 GB | ||
| EGAF50000162866 | fastq.gz | 1.2 GB | ||
| EGAF50000162867 | fastq.gz | 1.3 GB | ||
| EGAF50000162868 | fastq.gz | 1.0 GB | ||
| EGAF50000162869 | fastq.gz | 1.1 GB | ||
| EGAF50000162870 | fastq.gz | 1.3 GB | ||
| EGAF50000162871 | fastq.gz | 1.4 GB | ||
| EGAF50000162872 | fastq.gz | 1.3 GB | ||
| EGAF50000162873 | fastq.gz | 1.0 GB | ||
| EGAF50000162874 | fastq.gz | 1.2 GB | ||
| EGAF50000162875 | fastq.gz | 1.0 GB | ||
| EGAF50000162876 | fastq.gz | 1.1 GB | ||
| EGAF50000162877 | fastq.gz | 1.1 GB | ||
| EGAF50000162878 | fastq.gz | 1.2 GB | ||
| EGAF50000162879 | fastq.gz | 1.2 GB | ||
| EGAF50000162880 | fastq.gz | 1.3 GB | ||
| EGAF50000162881 | fastq.gz | 1.3 GB | ||
| EGAF50000162882 | fastq.gz | 1.4 GB | ||
| EGAF50000162883 | fastq.gz | 953.5 MB | ||
| EGAF50000162884 | fastq.gz | 1.5 GB | ||
| EGAF50000162885 | fastq.gz | 1.0 GB | ||
| EGAF50000162886 | fastq.gz | 1.1 GB | ||
| EGAF50000162887 | fastq.gz | 1.2 GB | ||
| EGAF50000162888 | fastq.gz | 1.3 GB | ||
| EGAF50000162889 | fastq.gz | 1.3 GB | ||
| EGAF50000162890 | fastq.gz | 1.4 GB | ||
| EGAF50000162891 | fastq.gz | 1.4 GB | ||
| EGAF50000162892 | fastq.gz | 1.2 GB | ||
| EGAF50000162893 | fastq.gz | 1.3 GB | ||
| EGAF50000162894 | fastq.gz | 1.1 GB | ||
| EGAF50000162895 | fastq.gz | 1.2 GB | ||
| EGAF50000162896 | fastq.gz | 1.6 GB | ||
| EGAF50000162897 | fastq.gz | 1.1 GB | ||
| EGAF50000162898 | fastq.gz | 1.7 GB | ||
| EGAF50000162899 | fastq.gz | 1.2 GB | ||
| EGAF50000162900 | fastq.gz | 2.0 GB | ||
| EGAF50000162901 | fastq.gz | 2.1 GB | ||
| EGAF50000162902 | fastq.gz | 1.4 GB | ||
| EGAF50000162903 | fastq.gz | 1.5 GB | ||
| EGAF50000162904 | fastq.gz | 1.1 GB | ||
| EGAF50000162905 | fastq.gz | 1.1 GB | ||
| EGAF50000162906 | fastq.gz | 1.2 GB | ||
| EGAF50000162907 | fastq.gz | 1.1 GB | ||
| EGAF50000162908 | fastq.gz | 1.1 GB | ||
| EGAF50000162909 | fastq.gz | 1.2 GB | ||
| EGAF50000162910 | fastq.gz | 1.2 GB | ||
| EGAF50000162911 | fastq.gz | 1.3 GB | ||
| EGAF50000162912 | fastq.gz | 1.3 GB | ||
| EGAF50000162913 | fastq.gz | 1.4 GB | ||
| EGAF50000162914 | fastq.gz | 1.7 GB | ||
| EGAF50000162915 | fastq.gz | 1.3 GB | ||
| EGAF50000162916 | fastq.gz | 1.7 GB | ||
| EGAF50000162917 | fastq.gz | 1.4 GB | ||
| EGAF50000162918 | fastq.gz | 1.7 GB | ||
| EGAF50000162919 | fastq.gz | 1.8 GB | ||
| EGAF50000162920 | fastq.gz | 1.2 GB | ||
| EGAF50000162921 | fastq.gz | 1.2 GB | ||
| EGAF50000162922 | fastq.gz | 940.0 MB | ||
| EGAF50000162923 | fastq.gz | 970.9 MB | ||
| EGAF50000162924 | fastq.gz | 1.3 GB | ||
| EGAF50000162925 | fastq.gz | 1.3 GB | ||
| EGAF50000162926 | fastq.gz | 1.2 GB | ||
| EGAF50000162927 | fastq.gz | 1.2 GB | ||
| EGAF50000162928 | fastq.gz | 1.3 GB | ||
| EGAF50000162929 | fastq.gz | 1.4 GB | ||
| EGAF50000162930 | fastq.gz | 1.2 GB | ||
| EGAF50000162931 | fastq.gz | 1.3 GB | ||
| EGAF50000162932 | fastq.gz | 924.5 MB | ||
| EGAF50000162933 | fastq.gz | 965.5 MB | ||
| EGAF50000162934 | fastq.gz | 1.6 GB | ||
| EGAF50000162935 | fastq.gz | 1.7 GB | ||
| EGAF50000162936 | fastq.gz | 1.5 GB | ||
| EGAF50000162937 | fastq.gz | 1.6 GB | ||
| EGAF50000162938 | fastq.gz | 1.3 GB | ||
| EGAF50000162939 | fastq.gz | 1.4 GB | ||
| EGAF50000162940 | fastq.gz | 1.9 GB | ||
| EGAF50000162941 | csv | 18.7 MB | ||
| 289 Files (378.6 GB) | ||||