About file location

As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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RNA-Seq of human longitudinal whole blood samples from PCR-positive and PCR-negative recent household contacts of COVID-19 index cases.

Little is known about the transcriptomic profile of individuals who are exposed to SARS-CoV-2 yet resist becoming PCR positive. To investigate this, longitudinal whole-blood samples were taken (0, 7, 14, and 28 days after enrolment) from PCR positive and PCR negative SARS-CoV-2-naïve household contacts who were recently exposed to a COVID-19 index. Samples were also taken from pre- and post-pandemic unexposed controls. Total RNA was extracted from PAXgene tubes before undergoing poly(A) selection followed by globin and rRNA depletion. DNA libraries were constructed using the NEBNext® Ultra™ II Directional RNA Library Prep Kit for Illumina. All samples were then sequenced across 2 flowcells of an Illumina HiSeq 4000.

Request Access

Data is available upon reasonable request to the data access committee (Prof. Ajit Lalvani, Dr Joe Fenn and Mr Kieran Madon), Imperial College London).

Data is available upon reasonable request to the data access committee (Prof. Ajit Lalvani, Dr Joe Fenn and Mr Kieran Madon, Imperial College London). Investigators will be asked to provide a short summary of how they wish to use the data in their research prior to granting access.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000473 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000162653 fastq.gz 1.4 GB Report
EGAF50000162654 fastq.gz 530.8 MB Report
EGAF50000162655 fastq.gz 1.1 GB Report
EGAF50000162656 fastq.gz 1.2 GB Report
EGAF50000162657 fastq.gz 1.2 GB Report
EGAF50000162658 fastq.gz 1.3 GB Report
EGAF50000162659 fastq.gz 1.1 GB Report
EGAF50000162660 fastq.gz 1.1 GB Report
EGAF50000162661 fastq.gz 1.4 GB Report
EGAF50000162662 fastq.gz 1.4 GB Report
EGAF50000162663 fastq.gz 973.0 MB Report
EGAF50000162664 fastq.gz 1.0 GB Report
EGAF50000162665 fastq.gz 1.1 GB Report
EGAF50000162666 fastq.gz 1.1 GB Report
EGAF50000162667 fastq.gz 1.2 GB Report
EGAF50000162668 fastq.gz 1.3 GB Report
EGAF50000162669 fastq.gz 1.2 GB Report
EGAF50000162670 fastq.gz 1.3 GB Report
EGAF50000162671 fastq.gz 1.5 GB Report
EGAF50000162672 fastq.gz 1.7 GB Report
EGAF50000162673 fastq.gz 1.2 GB Report
EGAF50000162674 fastq.gz 1.3 GB Report
EGAF50000162675 fastq.gz 1.0 GB Report
EGAF50000162676 fastq.gz 1.1 GB Report
EGAF50000162677 fastq.gz 1.3 GB Report
EGAF50000162678 fastq.gz 1.4 GB Report
EGAF50000162679 fastq.gz 2.3 GB Report
EGAF50000162680 fastq.gz 2.0 GB Report
EGAF50000162681 fastq.gz 1.1 GB Report
EGAF50000162682 fastq.gz 1.2 GB Report
EGAF50000162683 fastq.gz 1.2 GB Report
EGAF50000162684 fastq.gz 1.3 GB Report
EGAF50000162685 fastq.gz 1.2 GB Report
EGAF50000162686 fastq.gz 1.3 GB Report
EGAF50000162687 fastq.gz 1.6 GB Report
EGAF50000162688 fastq.gz 1.7 GB Report
EGAF50000162689 fastq.gz 1.2 GB Report
EGAF50000162690 fastq.gz 1.3 GB Report
EGAF50000162691 fastq.gz 2.8 GB Report
EGAF50000162692 fastq.gz 1.3 GB Report
EGAF50000162693 fastq.gz 2.9 GB Report
EGAF50000162694 fastq.gz 1.1 GB Report
EGAF50000162695 fastq.gz 1.4 GB Report
EGAF50000162696 fastq.gz 1.2 GB Report
EGAF50000162697 fastq.gz 1.7 GB Report
EGAF50000162698 fastq.gz 1.8 GB Report
EGAF50000162699 fastq.gz 1.5 GB Report
EGAF50000162700 fastq.gz 1.5 GB Report
EGAF50000162701 fastq.gz 1.3 GB Report
EGAF50000162702 fastq.gz 1.4 GB Report
EGAF50000162703 fastq.gz 1.6 GB Report
EGAF50000162704 fastq.gz 1.6 GB Report
EGAF50000162705 fastq.gz 1.2 GB Report
EGAF50000162706 fastq.gz 1.2 GB Report
EGAF50000162707 fastq.gz 1.4 GB Report
EGAF50000162708 fastq.gz 1.4 GB Report
EGAF50000162709 fastq.gz 1.1 GB Report
EGAF50000162710 fastq.gz 1.8 GB Report
EGAF50000162711 fastq.gz 1.2 GB Report
EGAF50000162712 fastq.gz 1.2 GB Report
EGAF50000162713 fastq.gz 1.3 GB Report
EGAF50000162714 fastq.gz 1.3 GB Report
EGAF50000162715 fastq.gz 1.4 GB Report
EGAF50000162716 fastq.gz 1.3 GB Report
EGAF50000162717 fastq.gz 1.3 GB Report
EGAF50000162718 fastq.gz 1.1 GB Report
EGAF50000162719 fastq.gz 1.1 GB Report
EGAF50000162720 fastq.gz 1.3 GB Report
EGAF50000162721 fastq.gz 1.3 GB Report
EGAF50000162722 fastq.gz 1.2 GB Report
EGAF50000162723 fastq.gz 1.3 GB Report
EGAF50000162724 fastq.gz 1.1 GB Report
EGAF50000162725 fastq.gz 1.0 GB Report
EGAF50000162726 fastq.gz 1.2 GB Report
EGAF50000162727 fastq.gz 917.2 MB Report
EGAF50000162728 fastq.gz 1.0 GB Report
EGAF50000162729 fastq.gz 961.6 MB Report
EGAF50000162730 fastq.gz 1.5 GB Report
EGAF50000162731 fastq.gz 1.6 GB Report
EGAF50000162732 fastq.gz 1.3 GB Report
EGAF50000162733 fastq.gz 1.3 GB Report
EGAF50000162734 fastq.gz 1.2 GB Report
EGAF50000162735 fastq.gz 1.3 GB Report
EGAF50000162736 fastq.gz 1.2 GB Report
EGAF50000162737 fastq.gz 1.3 GB Report
EGAF50000162738 fastq.gz 1.5 GB Report
EGAF50000162739 fastq.gz 1.6 GB Report
EGAF50000162740 fastq.gz 1.4 GB Report
EGAF50000162741 fastq.gz 1.0 GB Report
EGAF50000162742 fastq.gz 1.5 GB Report
EGAF50000162743 fastq.gz 1.1 GB Report
EGAF50000162744 fastq.gz 1.3 GB Report
EGAF50000162745 fastq.gz 1.4 GB Report
EGAF50000162746 fastq.gz 1.5 GB Report
EGAF50000162747 fastq.gz 1.6 GB Report
EGAF50000162748 fastq.gz 1.3 GB Report
EGAF50000162749 fastq.gz 1.4 GB Report
EGAF50000162750 fastq.gz 1.3 GB Report
EGAF50000162751 fastq.gz 1.2 GB Report
EGAF50000162752 fastq.gz 1.4 GB Report
EGAF50000162753 fastq.gz 1.1 GB Report
EGAF50000162754 fastq.gz 1.2 GB Report
EGAF50000162755 fastq.gz 918.9 MB Report
EGAF50000162756 fastq.gz 1.1 GB Report
EGAF50000162757 fastq.gz 955.4 MB Report
EGAF50000162758 fastq.gz 1.5 GB Report
EGAF50000162759 fastq.gz 1.5 GB Report
EGAF50000162760 fastq.gz 1.8 GB Report
EGAF50000162761 fastq.gz 1.9 GB Report
EGAF50000162762 fastq.gz 1.4 GB Report
EGAF50000162763 fastq.gz 1.5 GB Report
EGAF50000162764 fastq.gz 1.2 GB Report
EGAF50000162765 fastq.gz 1.3 GB Report
EGAF50000162766 fastq.gz 1.3 GB Report
EGAF50000162767 fastq.gz 1.4 GB Report
EGAF50000162768 fastq.gz 1.3 GB Report
EGAF50000162769 fastq.gz 1.4 GB Report
EGAF50000162770 fastq.gz 1.3 GB Report
EGAF50000162771 fastq.gz 1.4 GB Report
EGAF50000162772 fastq.gz 1.6 GB Report
EGAF50000162773 fastq.gz 1.7 GB Report
EGAF50000162774 fastq.gz 1.3 GB Report
EGAF50000162775 fastq.gz 1.4 GB Report
EGAF50000162776 fastq.gz 1.1 GB Report
EGAF50000162777 fastq.gz 1.2 GB Report
EGAF50000162778 fastq.gz 1.3 GB Report
EGAF50000162779 fastq.gz 1.4 GB Report
EGAF50000162780 fastq.gz 1.2 GB Report
EGAF50000162781 fastq.gz 1.2 GB Report
EGAF50000162782 fastq.gz 1.1 GB Report
EGAF50000162783 fastq.gz 1.1 GB Report
EGAF50000162784 fastq.gz 1.2 GB Report
EGAF50000162785 fastq.gz 1.1 GB Report
EGAF50000162786 fastq.gz 1.3 GB Report
EGAF50000162787 fastq.gz 1.1 GB Report
EGAF50000162788 fastq.gz 1.6 GB Report
EGAF50000162789 fastq.gz 1.7 GB Report
EGAF50000162790 fastq.gz 1.3 GB Report
EGAF50000162791 fastq.gz 1.4 GB Report
EGAF50000162792 fastq.gz 1.1 GB Report
EGAF50000162793 fastq.gz 1.2 GB Report
EGAF50000162794 fastq.gz 1.3 GB Report
EGAF50000162795 fastq.gz 1.4 GB Report
EGAF50000162796 fastq.gz 1.4 GB Report
EGAF50000162797 fastq.gz 1.5 GB Report
EGAF50000162798 fastq.gz 1.3 GB Report
EGAF50000162799 fastq.gz 1.3 GB Report
EGAF50000162800 fastq.gz 1.4 GB Report
EGAF50000162801 fastq.gz 1.5 GB Report
EGAF50000162802 fastq.gz 1.4 GB Report
EGAF50000162803 fastq.gz 1.5 GB Report
EGAF50000162804 fastq.gz 1.3 GB Report
EGAF50000162805 fastq.gz 1.3 GB Report
EGAF50000162806 fastq.gz 1.4 GB Report
EGAF50000162807 fastq.gz 1.5 GB Report
EGAF50000162808 fastq.gz 1.3 GB Report
EGAF50000162809 fastq.gz 1.4 GB Report
EGAF50000162810 fastq.gz 1.2 GB Report
EGAF50000162811 fastq.gz 1.3 GB Report
EGAF50000162812 fastq.gz 1.3 GB Report
EGAF50000162813 fastq.gz 1.4 GB Report
EGAF50000162814 fastq.gz 1.3 GB Report
EGAF50000162815 fastq.gz 1.4 GB Report
EGAF50000162816 fastq.gz 1.2 GB Report
EGAF50000162817 fastq.gz 1.3 GB Report
EGAF50000162818 fastq.gz 1.7 GB Report
EGAF50000162819 fastq.gz 1.0 GB Report
EGAF50000162820 fastq.gz 1.7 GB Report
EGAF50000162821 fastq.gz 1.1 GB Report
EGAF50000162822 fastq.gz 1.2 GB Report
EGAF50000162823 fastq.gz 1.3 GB Report
EGAF50000162824 fastq.gz 1.4 GB Report
EGAF50000162825 fastq.gz 1.5 GB Report
EGAF50000162826 fastq.gz 1.4 GB Report
EGAF50000162827 fastq.gz 1.5 GB Report
EGAF50000162828 fastq.gz 1.3 GB Report
EGAF50000162829 fastq.gz 1.4 GB Report
EGAF50000162830 fastq.gz 1.1 GB Report
EGAF50000162831 fastq.gz 1.2 GB Report
EGAF50000162832 fastq.gz 1.1 GB Report
EGAF50000162833 fastq.gz 1.1 GB Report
EGAF50000162834 fastq.gz 1.1 GB Report
EGAF50000162835 fastq.gz 1.2 GB Report
EGAF50000162836 fastq.gz 1.0 GB Report
EGAF50000162837 fastq.gz 1.1 GB Report
EGAF50000162838 fastq.gz 1.2 GB Report
EGAF50000162839 fastq.gz 1.3 GB Report
EGAF50000162840 fastq.gz 1.1 GB Report
EGAF50000162841 fastq.gz 1.2 GB Report
EGAF50000162842 fastq.gz 1.3 GB Report
EGAF50000162843 fastq.gz 1.3 GB Report
EGAF50000162844 fastq.gz 1.1 GB Report
EGAF50000162845 fastq.gz 1.2 GB Report
EGAF50000162846 fastq.gz 1.0 GB Report
EGAF50000162847 fastq.gz 1.1 GB Report
EGAF50000162848 fastq.gz 1.3 GB Report
EGAF50000162849 fastq.gz 977.3 MB Report
EGAF50000162850 fastq.gz 1.3 GB Report
EGAF50000162851 fastq.gz 1.1 GB Report
EGAF50000162852 fastq.gz 1.4 GB Report
EGAF50000162853 fastq.gz 1.5 GB Report
EGAF50000162854 fastq.gz 1.3 GB Report
EGAF50000162855 fastq.gz 1.1 GB Report
EGAF50000162856 fastq.gz 1.4 GB Report
EGAF50000162857 fastq.gz 1.2 GB Report
EGAF50000162858 fastq.gz 1.3 GB Report
EGAF50000162859 fastq.gz 1.4 GB Report
EGAF50000162860 fastq.gz 1.2 GB Report
EGAF50000162861 fastq.gz 1.1 GB Report
EGAF50000162862 fastq.gz 1.2 GB Report
EGAF50000162863 fastq.gz 1.2 GB Report
EGAF50000162864 fastq.gz 1.1 GB Report
EGAF50000162865 fastq.gz 1.2 GB Report
EGAF50000162866 fastq.gz 1.2 GB Report
EGAF50000162867 fastq.gz 1.3 GB Report
EGAF50000162868 fastq.gz 1.0 GB Report
EGAF50000162869 fastq.gz 1.1 GB Report
EGAF50000162870 fastq.gz 1.3 GB Report
EGAF50000162871 fastq.gz 1.4 GB Report
EGAF50000162872 fastq.gz 1.3 GB Report
EGAF50000162873 fastq.gz 1.0 GB Report
EGAF50000162874 fastq.gz 1.2 GB Report
EGAF50000162875 fastq.gz 1.0 GB Report
EGAF50000162876 fastq.gz 1.1 GB Report
EGAF50000162877 fastq.gz 1.1 GB Report
EGAF50000162878 fastq.gz 1.2 GB Report
EGAF50000162879 fastq.gz 1.2 GB Report
EGAF50000162880 fastq.gz 1.3 GB Report
EGAF50000162881 fastq.gz 1.3 GB Report
EGAF50000162882 fastq.gz 1.4 GB Report
EGAF50000162883 fastq.gz 953.5 MB Report
EGAF50000162884 fastq.gz 1.5 GB Report
EGAF50000162885 fastq.gz 1.0 GB Report
EGAF50000162886 fastq.gz 1.1 GB Report
EGAF50000162887 fastq.gz 1.2 GB Report
EGAF50000162888 fastq.gz 1.3 GB Report
EGAF50000162889 fastq.gz 1.3 GB Report
EGAF50000162890 fastq.gz 1.4 GB Report
EGAF50000162891 fastq.gz 1.4 GB Report
EGAF50000162892 fastq.gz 1.2 GB Report
EGAF50000162893 fastq.gz 1.3 GB Report
EGAF50000162894 fastq.gz 1.1 GB Report
EGAF50000162895 fastq.gz 1.2 GB Report
EGAF50000162896 fastq.gz 1.6 GB Report
EGAF50000162897 fastq.gz 1.1 GB Report
EGAF50000162898 fastq.gz 1.7 GB Report
EGAF50000162899 fastq.gz 1.2 GB Report
EGAF50000162900 fastq.gz 2.0 GB Report
EGAF50000162901 fastq.gz 2.1 GB Report
EGAF50000162902 fastq.gz 1.4 GB Report
EGAF50000162903 fastq.gz 1.5 GB Report
EGAF50000162904 fastq.gz 1.1 GB Report
EGAF50000162905 fastq.gz 1.1 GB Report
EGAF50000162906 fastq.gz 1.2 GB Report
EGAF50000162907 fastq.gz 1.1 GB Report
EGAF50000162908 fastq.gz 1.1 GB Report
EGAF50000162909 fastq.gz 1.2 GB Report
EGAF50000162910 fastq.gz 1.2 GB Report
EGAF50000162911 fastq.gz 1.3 GB Report
EGAF50000162912 fastq.gz 1.3 GB Report
EGAF50000162913 fastq.gz 1.4 GB Report
EGAF50000162914 fastq.gz 1.7 GB Report
EGAF50000162915 fastq.gz 1.3 GB Report
EGAF50000162916 fastq.gz 1.7 GB Report
EGAF50000162917 fastq.gz 1.4 GB Report
EGAF50000162918 fastq.gz 1.7 GB Report
EGAF50000162919 fastq.gz 1.8 GB Report
EGAF50000162920 fastq.gz 1.2 GB Report
EGAF50000162921 fastq.gz 1.2 GB Report
EGAF50000162922 fastq.gz 940.0 MB Report
EGAF50000162923 fastq.gz 970.9 MB Report
EGAF50000162924 fastq.gz 1.3 GB Report
EGAF50000162925 fastq.gz 1.3 GB Report
EGAF50000162926 fastq.gz 1.2 GB Report
EGAF50000162927 fastq.gz 1.2 GB Report
EGAF50000162928 fastq.gz 1.3 GB Report
EGAF50000162929 fastq.gz 1.4 GB Report
EGAF50000162930 fastq.gz 1.2 GB Report
EGAF50000162931 fastq.gz 1.3 GB Report
EGAF50000162932 fastq.gz 924.5 MB Report
EGAF50000162933 fastq.gz 965.5 MB Report
EGAF50000162934 fastq.gz 1.6 GB Report
EGAF50000162935 fastq.gz 1.7 GB Report
EGAF50000162936 fastq.gz 1.5 GB Report
EGAF50000162937 fastq.gz 1.6 GB Report
EGAF50000162938 fastq.gz 1.3 GB Report
EGAF50000162939 fastq.gz 1.4 GB Report
EGAF50000162940 fastq.gz 1.9 GB Report
EGAF50000162941 csv 18.7 MB
289 Files (378.6 GB)