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SCLC MeDIP-seq

Methylation profile of 33 patients with small cell lung cancer (SCLC) for both, tumour and normal lung samples using MeDIP-seq.

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Institute for Translational Epigenetics general policy

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom Institute for Translational Epigenetics grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: whom Institute for Translational Epigenetics and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. Institute for Translational Epigenetics: Institute for Translational Epigenetics at the University Hospital Cologne, Faculty of Medicine, University of Cologne, Germany 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Institute for Translational Epigenetics within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Institute for Translational Epigenetics prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Institute for Translational Epigenetics as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Institute for Translational Epigenetics may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Institute for Translational Epigenetics. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Germany and shall be subject to the exclusive jurisdiction of the German courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000506 Epigenetics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000171724 fastq.gz 2.2 GB
EGAF50000171725 fastq.gz 2.2 GB
EGAF50000171726 fastq.gz 2.3 GB
EGAF50000171727 fastq.gz 2.3 GB
EGAF50000171728 fastq.gz 2.2 GB
EGAF50000171729 fastq.gz 2.2 GB
EGAF50000171730 fastq.gz 2.7 GB
EGAF50000171731 fastq.gz 2.7 GB
EGAF50000171732 fastq.gz 634.7 MB
EGAF50000171733 fastq.gz 641.3 MB
EGAF50000171734 fastq.gz 972.0 MB
EGAF50000171735 fastq.gz 1.0 GB
EGAF50000171736 fastq.gz 1.3 GB
EGAF50000171737 fastq.gz 1.3 GB
EGAF50000171738 fastq.gz 1.2 GB
EGAF50000171739 fastq.gz 1.3 GB
EGAF50000171740 fastq.gz 2.8 GB
EGAF50000171741 fastq.gz 2.9 GB
EGAF50000171742 fastq.gz 1.3 GB
EGAF50000171743 fastq.gz 1.3 GB
EGAF50000171744 fastq.gz 1.2 GB
EGAF50000171745 fastq.gz 1.2 GB
EGAF50000171746 fastq.gz 1.5 GB
EGAF50000171747 fastq.gz 1.5 GB
EGAF50000171748 fastq.gz 1.9 GB
EGAF50000171749 fastq.gz 1.9 GB
EGAF50000171750 fastq.gz 2.2 GB
EGAF50000171751 fastq.gz 2.2 GB
EGAF50000171752 fastq.gz 2.8 GB
EGAF50000171753 fastq.gz 2.8 GB
EGAF50000171754 fastq.gz 2.0 GB
EGAF50000171755 fastq.gz 2.1 GB
EGAF50000171756 fastq.gz 2.0 GB
EGAF50000171757 fastq.gz 2.1 GB
EGAF50000171758 fastq.gz 1.8 GB
EGAF50000171759 fastq.gz 1.9 GB
EGAF50000171760 fastq.gz 1.9 GB
EGAF50000171761 fastq.gz 1.9 GB
EGAF50000171762 fastq.gz 2.2 GB
EGAF50000171763 fastq.gz 2.3 GB
EGAF50000171764 fastq.gz 2.6 GB
EGAF50000171765 fastq.gz 2.7 GB
EGAF50000171766 fastq.gz 2.7 GB
EGAF50000171767 fastq.gz 2.7 GB
EGAF50000171768 fastq.gz 2.0 GB
EGAF50000171769 fastq.gz 2.2 GB
EGAF50000171770 fastq.gz 2.1 GB
EGAF50000171771 fastq.gz 2.2 GB
EGAF50000171772 fastq.gz 2.3 GB
EGAF50000171773 fastq.gz 2.4 GB
EGAF50000171774 fastq.gz 2.5 GB
EGAF50000171775 fastq.gz 2.6 GB
EGAF50000171776 fastq.gz 2.3 GB
EGAF50000171777 fastq.gz 2.3 GB
EGAF50000171778 fastq.gz 2.3 GB
EGAF50000171779 fastq.gz 2.3 GB
EGAF50000171780 fastq.gz 2.3 GB
EGAF50000171781 fastq.gz 2.4 GB
EGAF50000171782 fastq.gz 2.2 GB
EGAF50000171783 fastq.gz 2.3 GB
EGAF50000171784 fastq.gz 1.4 GB
EGAF50000171785 fastq.gz 1.4 GB
EGAF50000171786 fastq.gz 1.5 GB
EGAF50000171787 fastq.gz 1.6 GB
EGAF50000171788 fastq.gz 640.0 MB
EGAF50000171789 fastq.gz 651.9 MB
EGAF50000171790 fastq.gz 2.0 GB
EGAF50000171791 fastq.gz 2.0 GB
EGAF50000171792 fastq.gz 1.8 GB
EGAF50000171793 fastq.gz 1.9 GB
EGAF50000171794 fastq.gz 2.8 GB
EGAF50000171795 fastq.gz 2.8 GB
EGAF50000171796 fastq.gz 2.5 GB
EGAF50000171797 fastq.gz 2.6 GB
EGAF50000171798 fastq.gz 2.5 GB
EGAF50000171799 fastq.gz 2.6 GB
EGAF50000171800 fastq.gz 2.0 GB
EGAF50000171801 fastq.gz 2.1 GB
EGAF50000171802 fastq.gz 2.7 GB
EGAF50000171803 fastq.gz 2.8 GB
EGAF50000171804 fastq.gz 2.2 GB
EGAF50000171805 fastq.gz 2.2 GB
EGAF50000171806 fastq.gz 2.6 GB
EGAF50000171807 fastq.gz 2.7 GB
EGAF50000171808 fastq.gz 2.1 GB
EGAF50000171809 fastq.gz 2.2 GB
EGAF50000171810 fastq.gz 2.7 GB
EGAF50000171811 fastq.gz 2.8 GB
EGAF50000171812 fastq.gz 2.2 GB
EGAF50000171813 fastq.gz 2.3 GB
EGAF50000171814 fastq.gz 2.3 GB
EGAF50000171815 fastq.gz 2.4 GB
EGAF50000171816 fastq.gz 1.9 GB
EGAF50000171817 fastq.gz 1.9 GB
EGAF50000171818 fastq.gz 2.5 GB
EGAF50000171819 fastq.gz 2.6 GB
EGAF50000171820 fastq.gz 2.6 GB
EGAF50000171821 fastq.gz 2.7 GB
EGAF50000171822 fastq.gz 2.9 GB
EGAF50000171823 fastq.gz 3.0 GB
EGAF50000171824 fastq.gz 1.8 GB
EGAF50000171825 fastq.gz 1.9 GB
EGAF50000171826 fastq.gz 2.5 GB
EGAF50000171827 fastq.gz 2.6 GB
EGAF50000171828 fastq.gz 8.4 GB
EGAF50000171829 fastq.gz 8.6 GB
EGAF50000171830 fastq.gz 2.7 GB
EGAF50000171831 fastq.gz 2.8 GB
EGAF50000171832 fastq.gz 2.4 GB
EGAF50000171833 fastq.gz 2.5 GB
EGAF50000171834 fastq.gz 2.4 GB
EGAF50000171835 fastq.gz 2.4 GB
EGAF50000171836 fastq.gz 2.5 GB
EGAF50000171837 fastq.gz 2.6 GB
EGAF50000171838 fastq.gz 3.0 GB
EGAF50000171839 fastq.gz 3.1 GB
EGAF50000171840 fastq.gz 2.7 GB
EGAF50000171841 fastq.gz 2.7 GB
EGAF50000171842 fastq.gz 2.9 GB
EGAF50000171843 fastq.gz 2.9 GB
EGAF50000171844 fastq.gz 1.6 GB
EGAF50000171845 fastq.gz 1.7 GB
EGAF50000171846 fastq.gz 1.2 GB
EGAF50000171847 fastq.gz 1.2 GB
EGAF50000171848 fastq.gz 2.2 GB
EGAF50000171849 fastq.gz 2.3 GB
EGAF50000171850 fastq.gz 2.7 GB
EGAF50000171851 fastq.gz 2.7 GB
EGAF50000171852 fastq.gz 2.2 GB
EGAF50000171853 fastq.gz 2.3 GB
EGAF50000171854 fastq.gz 2.5 GB
EGAF50000171855 fastq.gz 2.6 GB
EGAF50000171856 fastq.gz 2.0 GB
EGAF50000171857 fastq.gz 2.0 GB
EGAF50000171858 fastq.gz 2.0 GB
EGAF50000171859 fastq.gz 2.1 GB
EGAF50000171860 fastq.gz 2.1 GB
EGAF50000171861 fastq.gz 2.1 GB
138 Files (312.0 GB)