Dataset for the manuscript of Scywalker: scalable end-to-end data analysis workflow for nanopore single-cell transcriptome sequencing
Dataset for the manuscript Scywalker: scalable end-to-end data analysis workflow for nanopore single-cell transcriptome sequencing. Contains fastq files for 4 brain samples obtained from short-read NovaSeq 6000 v1.5 Illumina and long-read Oxford Nanopore PromethION sequencing. Single-cell suspensions were generated using 10x Genomics Chromium Next GEM Single Cell 3'Kit v3.1
- 09/09/2024
- 8 samples
- DAC: EGAC00001003263
- Technologies: Illumina NovaSeq 6000, PromethION
This policy applies to the access to and transfer of VIB research datasets that contain non-anonymous Personal Data which are subject to the provisions of the General Data Protection Regulation (EU) 2016/679.
Applicability This policy applies to the access to and transfer of VIB research datasets that contain non-anonymous Personal Data which are subject to the provisions of the General Data Protection Regulation (EU) 2016/679. Access/transfer conditions - The access/transfer is subject to approval by the VIB Data Access Committee. - The proposed research purpose should not be incompatible with the primary research purpose for which the data were originally generated. - The Recipient shall have the necessary competence to handle such datasets. - The Recipient shall have in place adequate safeguards for the protection of Personal Data. - Access is subject to a Data Transfer/Access Agreement which will be managed by VIB Innovation & Business. - The Data Transfer/Access will be limited to the Data that are necessary for the proposed research. Access/transfer procedure - Requests to access or obtain non-anonymous datasets should be submitted to dac@vib.be with a copy to the responsible scientist that has uploaded the dataset onto the repository. - The Requestor must fill in an online request form that will gather amongst other the following information: o Name, affiliation (legal entity) and contact information of the requesting recipient party. o Reference to the specific dataset(s) for which access or transfer is requested. o Description of the research purpose for which the data will be used. - The VIB Data Access Committee will take a decision to approve access/transfer within 14 days upon receipt of the request, involving the responsible scientist. - Data access will be given / Data will be transferred subject to and after completion of a Data Transfer/Access Agreement.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000537 | Transcriptome Analysis |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF50000178032 | fastq.gz | 1.9 GB | ||
| EGAF50000178033 | fastq.gz | 4.3 GB | ||
| EGAF50000178034 | fastq.gz | 1.9 GB | ||
| EGAF50000178035 | fastq.gz | 4.3 GB | ||
| EGAF50000178036 | fastq.gz | 3.4 GB | ||
| EGAF50000178037 | fastq.gz | 7.7 GB | ||
| EGAF50000178038 | fastq.gz | 3.3 GB | ||
| EGAF50000178039 | fastq.gz | 7.6 GB | ||
| EGAF50000178040 | fastq.gz | 7.7 GB | ||
| EGAF50000178041 | fastq.gz | 3.3 GB | ||
| EGAF50000178042 | fastq.gz | 3.3 GB | ||
| EGAF50000178043 | fastq.gz | 7.6 GB | ||
| EGAF50000178044 | fastq.gz | 1.4 GB | ||
| EGAF50000178045 | fastq.gz | 3.0 GB | ||
| EGAF50000178046 | fastq.gz | 1.4 GB | ||
| EGAF50000178047 | fastq.gz | 3.0 GB | ||
| EGAF50000178048 | fastq.gz | 1.4 GB | ||
| EGAF50000178049 | fastq.gz | 3.0 GB | ||
| EGAF50000178050 | fastq.gz | 1.4 GB | ||
| EGAF50000178051 | fastq.gz | 3.0 GB | ||
| EGAF50000178052 | gz | 96.6 GB | ||
| EGAF50000178053 | gz | 97.6 GB | ||
| EGAF50000178054 | gz | 100.0 GB | ||
| EGAF50000178055 | gz | 97.7 GB | ||
| EGAF50000178056 | fastq.gz | 1.1 GB | ||
| EGAF50000178057 | fastq.gz | 2.4 GB | ||
| EGAF50000178058 | fastq.gz | 1.9 GB | ||
| EGAF50000178059 | fastq.gz | 4.1 GB | ||
| EGAF50000178060 | fastq.gz | 1.9 GB | ||
| EGAF50000178061 | fastq.gz | 4.1 GB | ||
| EGAF50000178062 | fastq.gz | 1.9 GB | ||
| EGAF50000178063 | fastq.gz | 4.1 GB | ||
| EGAF50000178064 | fastq.gz | 1.9 GB | ||
| EGAF50000178065 | fastq.gz | 4.1 GB | ||
| EGAF50000178066 | fastq.gz | 1.9 GB | ||
| EGAF50000178067 | fastq.gz | 4.4 GB | ||
| EGAF50000178068 | fastq.gz | 1.9 GB | ||
| EGAF50000178069 | fastq.gz | 4.3 GB | ||
| 38 Files (506.0 GB) | ||||