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Dataset for the manuscript of Scywalker: scalable end-to-end data analysis workflow for nanopore single-cell transcriptome sequencing

Dataset for the manuscript Scywalker: scalable end-to-end data analysis workflow for nanopore single-cell transcriptome sequencing. Contains fastq files for 4 brain samples obtained from short-read NovaSeq 6000 v1.5 Illumina and long-read Oxford Nanopore PromethION sequencing. Single-cell suspensions were generated using 10x Genomics Chromium Next GEM Single Cell 3'Kit v3.1

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This policy applies to the access to and transfer of VIB research datasets that contain non-anonymous Personal Data which are subject to the provisions of the General Data Protection Regulation (EU) 2016/679.

Applicability This policy applies to the access to and transfer of VIB research datasets that contain non-anonymous Personal Data which are subject to the provisions of the General Data Protection Regulation (EU) 2016/679. Access/transfer conditions - The access/transfer is subject to approval by the VIB Data Access Committee. - The proposed research purpose should not be incompatible with the primary research purpose for which the data were originally generated. - The Recipient shall have the necessary competence to handle such datasets. - The Recipient shall have in place adequate safeguards for the protection of Personal Data. - Access is subject to a Data Transfer/Access Agreement which will be managed by VIB Innovation & Business. - The Data Transfer/Access will be limited to the Data that are necessary for the proposed research. Access/transfer procedure - Requests to access or obtain non-anonymous datasets should be submitted to dac@vib.be with a copy to the responsible scientist that has uploaded the dataset onto the repository. - The Requestor must fill in an online request form that will gather amongst other the following information: o Name, affiliation (legal entity) and contact information of the requesting recipient party. o Reference to the specific dataset(s) for which access or transfer is requested. o Description of the research purpose for which the data will be used. - The VIB Data Access Committee will take a decision to approve access/transfer within 14 days upon receipt of the request, involving the responsible scientist. - Data access will be given / Data will be transferred subject to and after completion of a Data Transfer/Access Agreement.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000537 Transcriptome Analysis

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
EGAF50000178032 fastq.gz 1.9 GB Report
EGAF50000178033 fastq.gz 4.3 GB Report
EGAF50000178034 fastq.gz 1.9 GB Report
EGAF50000178035 fastq.gz 4.3 GB Report
EGAF50000178036 fastq.gz 3.4 GB Report
EGAF50000178037 fastq.gz 7.7 GB Report
EGAF50000178038 fastq.gz 3.3 GB Report
EGAF50000178039 fastq.gz 7.6 GB Report
EGAF50000178040 fastq.gz 7.7 GB Report
EGAF50000178041 fastq.gz 3.3 GB Report
EGAF50000178042 fastq.gz 3.3 GB Report
EGAF50000178043 fastq.gz 7.6 GB Report
EGAF50000178044 fastq.gz 1.4 GB Report
EGAF50000178045 fastq.gz 3.0 GB Report
EGAF50000178046 fastq.gz 1.4 GB Report
EGAF50000178047 fastq.gz 3.0 GB Report
EGAF50000178048 fastq.gz 1.4 GB Report
EGAF50000178049 fastq.gz 3.0 GB Report
EGAF50000178050 fastq.gz 1.4 GB Report
EGAF50000178051 fastq.gz 3.0 GB Report
EGAF50000178052 gz 96.6 GB
EGAF50000178053 gz 97.6 GB
EGAF50000178054 gz 100.0 GB
EGAF50000178055 gz 97.7 GB
EGAF50000178056 fastq.gz 1.1 GB Report
EGAF50000178057 fastq.gz 2.4 GB Report
EGAF50000178058 fastq.gz 1.9 GB Report
EGAF50000178059 fastq.gz 4.1 GB Report
EGAF50000178060 fastq.gz 1.9 GB Report
EGAF50000178061 fastq.gz 4.1 GB Report
EGAF50000178062 fastq.gz 1.9 GB Report
EGAF50000178063 fastq.gz 4.1 GB Report
EGAF50000178064 fastq.gz 1.9 GB Report
EGAF50000178065 fastq.gz 4.1 GB Report
EGAF50000178066 fastq.gz 1.9 GB Report
EGAF50000178067 fastq.gz 4.4 GB Report
EGAF50000178068 fastq.gz 1.9 GB Report
EGAF50000178069 fastq.gz 4.3 GB Report
38 Files (506.0 GB)