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As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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BELLINI clinical trial bulk RNA-Seq data: cohorts A, B & С

RNA-Seq data of 78 breast cancer primary tumors obtained from 45 unique patients from BELLINI clinical trial. The data includes pre- and post-treatment samples. Patients in cohort A (15 patients, 25 samples) received nivolumab for 4 weeks, patients in cohort B (15 patients, 28 samples) received nivolumab + ipilimumab for 4 weeks, and patients in cohort C (15 patients, 25 samples) received nivolumab + ipilimumab for 6 weeks. The included raw transcriptome sequencing data in fastq format was generated using Illumina NovaSeq 6000.

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DUO:0000001
version: 2021-02-23

data use permission

A data item that is used to indicate consent permissions for datasets and/or materials, and relates to the purposes for which datasets and/or material might be removed, stored or used.

Data Access Committee of the Kok group, NKI.

To request access to the datasets, please provide the following information in your Data Access Request: - Recipient and Recipient Institution - Details of dataset requested, i.e. EGA Study and Dataset Accession Number(s) - Brief abstract of the Project in which the Data will be used (500 words max.) - All Individuals who will be allowed access to the requested datasets by the Recipient Institution After receipt and review of your Data Access Request by the Data Access Committee, you will receive a Data Transfer Agreement to be completed, signed and returned to KT&C and the Data Access Committee, prior to being granted access to the requested dataset(s). For the avoidance of doubt, the Data Access Committee reserves the right to withhold granting access.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000567 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF00008560140 fastq.gz 886.8 MB Report
EGAF00008560141 fastq.gz 1.0 GB Report
EGAF00008560142 fastq.gz 1.0 GB Report
EGAF00008560143 fastq.gz 688.3 MB Report
EGAF00008560144 fastq.gz 830.0 MB Report
EGAF00008560145 fastq.gz 866.6 MB Report
EGAF00008560146 fastq.gz 758.3 MB Report
EGAF00008560147 fastq.gz 877.6 MB Report
EGAF00008560148 fastq.gz 849.2 MB Report
EGAF00008560149 fastq.gz 1.3 GB Report
EGAF00008560151 fastq.gz 882.0 MB Report
EGAF00008560152 fastq.gz 894.0 MB Report
EGAF00008560153 fastq.gz 799.9 MB Report
EGAF00008560154 fastq.gz 875.8 MB Report
EGAF00008560155 fastq.gz 762.6 MB Report
EGAF00008560156 fastq.gz 703.3 MB Report
EGAF00008560157 fastq.gz 858.2 MB Report
EGAF00008560158 fastq.gz 922.1 MB Report
EGAF00008560159 fastq.gz 890.7 MB Report
EGAF00008560160 fastq.gz 867.7 MB Report
EGAF00008560161 fastq.gz 939.0 MB Report
EGAF00008560162 fastq.gz 1.2 GB Report
EGAF00008560163 fastq.gz 937.2 MB Report
EGAF00008560164 fastq.gz 1.3 GB Report
EGAF00008560165 fastq.gz 885.8 MB Report
EGAF00008560166 fastq.gz 1.3 GB Report
EGAF00008560168 fastq.gz 1.1 GB Report
EGAF00008560169 fastq.gz 787.7 MB Report
EGAF00008560170 fastq.gz 848.6 MB Report
EGAF00008560171 fastq.gz 990.3 MB Report
EGAF00008560172 fastq.gz 913.5 MB Report
EGAF00008560173 fastq.gz 910.2 MB Report
EGAF00008560175 fastq.gz 1.0 GB Report
EGAF00008560176 fastq.gz 668.5 MB Report
EGAF00008560177 fastq.gz 1.1 GB Report
EGAF00008560178 fastq.gz 1.0 GB Report
EGAF00008560179 fastq.gz 742.1 MB Report
EGAF00008560180 fastq.gz 1.1 GB Report
EGAF00008560181 fastq.gz 733.7 MB Report
EGAF00008560182 fastq.gz 988.4 MB Report
EGAF00008560183 fastq.gz 662.7 MB Report
EGAF00008560184 fastq.gz 744.0 MB Report
EGAF00008560185 fastq.gz 1.0 GB Report
EGAF00008560187 fastq.gz 1.0 GB Report
EGAF00008560193 fastq.gz 1.1 GB Report
EGAF00008560194 fastq.gz 780.1 MB Report
EGAF00008560195 fastq.gz 816.6 MB Report
EGAF00008560196 fastq.gz 837.9 MB Report
EGAF00008560197 fastq.gz 807.1 MB Report
EGAF00008560198 fastq.gz 1.1 GB Report
EGAF00008560200 fastq.gz 955.6 MB Report
EGAF00008560201 fastq.gz 893.5 MB Report
EGAF00008560202 fastq.gz 914.9 MB Report
EGAF00008560203 fastq.gz 940.7 MB Report
EGAF00008560205 fastq.gz 796.4 MB Report
EGAF00008560206 fastq.gz 677.0 MB Report
EGAF00008560207 fastq.gz 721.1 MB Report
EGAF00008560208 fastq.gz 1.1 GB Report
EGAF00008560209 fastq.gz 1.0 GB Report
EGAF00008560210 fastq.gz 735.5 MB Report
EGAF00008560216 fastq.gz 862.8 MB Report
EGAF00008560217 fastq.gz 679.3 MB Report
EGAF00008560218 fastq.gz 974.2 MB Report
EGAF00008560219 fastq.gz 841.8 MB Report
EGAF00008560220 fastq.gz 930.8 MB Report
EGAF00008560228 fastq.gz 902.8 MB Report
EGAF00008560229 fastq.gz 709.4 MB Report
EGAF00008560230 fastq.gz 647.7 MB Report
EGAF00008560231 fastq.gz 772.5 MB Report
EGAF00008560232 fastq.gz 1.0 GB Report
EGAF00008560233 fastq.gz 1.1 GB Report
EGAF00008560235 fastq.gz 644.9 MB Report
EGAF00008560236 fastq.gz 805.7 MB Report
EGAF00008560237 fastq.gz 845.6 MB Report
EGAF00008560238 fastq.gz 908.2 MB Report
EGAF00008560240 fastq.gz 802.0 MB Report
EGAF00008560241 fastq.gz 969.4 MB Report
EGAF00008560262 fastq.gz 1.1 GB Report
EGAF00008560264 fastq.gz 886.3 MB Report
EGAF00008560265 fastq.gz 956.0 MB Report
EGAF00008560266 fastq.gz 598.8 MB Report
EGAF00008560267 fastq.gz 617.1 MB Report
EGAF00008560268 fastq.gz 1.0 GB Report
EGAF00008560269 fastq.gz 936.1 MB Report
EGAF00008560270 fastq.gz 906.0 MB Report
EGAF00008560277 fastq.gz 1.1 GB Report
EGAF00008560278 fastq.gz 822.6 MB Report
EGAF00008560282 fastq.gz 1.3 GB Report
EGAF00008560285 fastq.gz 925.4 MB Report
EGAF00008560286 fastq.gz 719.1 MB Report
EGAF00008560287 fastq.gz 1.1 GB Report
EGAF00008560288 fastq.gz 835.0 MB Report
EGAF00008560289 fastq.gz 993.3 MB Report
EGAF00008560290 fastq.gz 1.2 GB Report
EGAF00008560291 fastq.gz 971.3 MB Report
EGAF00008560305 fastq.gz 966.7 MB Report
EGAF00008560306 fastq.gz 946.9 MB Report
EGAF00008560307 fastq.gz 1.0 GB Report
EGAF00008560316 fastq.gz 1.1 GB Report
EGAF00008560317 fastq.gz 977.0 MB Report
EGAF00008560319 fastq.gz 1.1 GB Report
EGAF00008560320 fastq.gz 683.8 MB Report
EGAF00008560321 fastq.gz 776.8 MB Report
EGAF00008560323 fastq.gz 1.0 GB Report
EGAF00008560326 fastq.gz 764.1 MB Report
EGAF00008560327 fastq.gz 967.3 MB Report
EGAF00008560328 fastq.gz 621.1 MB Report
EGAF00008560329 fastq.gz 956.1 MB Report
EGAF00008560341 fastq.gz 1.1 GB Report
EGAF00008560381 fastq.gz 1.2 GB Report
EGAF00008560382 fastq.gz 939.9 MB Report
EGAF00008560384 fastq.gz 1.0 GB Report
EGAF00008560401 fastq.gz 1.1 GB Report
EGAF00008560402 fastq.gz 969.4 MB Report
EGAF00008560403 fastq.gz 1.2 GB Report
EGAF00008560404 fastq.gz 993.2 MB Report
EGAF00008560405 fastq.gz 964.2 MB Report
EGAF00008560407 fastq.gz 976.6 MB Report
EGAF00008560496 fastq.gz 1.1 GB Report
EGAF00008560498 fastq.gz 1.1 GB Report
EGAF00008560546 fastq.gz 920.7 MB Report
EGAF00008560547 fastq.gz 774.5 MB Report
EGAF00008560549 fastq.gz 907.1 MB Report
EGAF00008560550 fastq.gz 654.4 MB Report
EGAF00008560587 fastq.gz 697.3 MB Report
EGAF00008560634 fastq.gz 1.3 GB Report
EGAF00008560641 fastq.gz 970.9 MB Report
EGAF00008560696 fastq.gz 1.1 GB Report
EGAF00008560715 fastq.gz 1.0 GB Report
EGAF00008560745 fastq.gz 981.6 MB Report
EGAF00008560750 fastq.gz 1.3 GB Report
EGAF00008560751 fastq.gz 1.2 GB Report
EGAF00008560752 fastq.gz 1.0 GB Report
EGAF00008560826 fastq.gz 1.0 GB Report
EGAF00008560828 fastq.gz 1.0 GB Report
EGAF00008560830 fastq.gz 984.8 MB Report
EGAF00008560838 fastq.gz 1.2 GB Report
EGAF00008560839 fastq.gz 1.0 GB Report
EGAF00008560868 fastq.gz 1.0 GB Report
EGAF00008560877 fastq.gz 1.1 GB Report
EGAF00008560947 fastq.gz 978.5 MB Report
EGAF00008561050 fastq.gz 1.2 GB Report
EGAF00008561182 fastq.gz 1.0 GB Report
EGAF00008561189 fastq.gz 1.0 GB Report
EGAF00008561205 fastq.gz 992.5 MB Report
EGAF00008561207 fastq.gz 1.0 GB Report
EGAF00008561210 fastq.gz 1.1 GB Report
EGAF00008561292 fastq.gz 1.1 GB Report
EGAF00008561335 fastq.gz 1.2 GB Report
EGAF00008561339 fastq.gz 1.1 GB Report
EGAF00008561389 fastq.gz 1.1 GB Report
EGAF00008561390 fastq.gz 1.1 GB Report
EGAF00008561486 fastq.gz 949.0 MB Report
EGAF00008561578 fastq.gz 1.1 GB Report
EGAF00008561579 fastq.gz 1.0 GB Report
EGAF00008561581 fastq.gz 977.6 MB Report
156 Files (147.7 GB)