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BELLINI clinical trial bulk RNA-Seq data: cohorts A, B & С

RNA-Seq data of 78 breast cancer primary tumors obtained from 45 unique patients from BELLINI clinical trial. The data includes pre- and post-treatment samples. Patients in cohort A (15 patients, 25 samples) received nivolumab for 4 weeks, patients in cohort B (15 patients, 28 samples) received nivolumab + ipilimumab for 4 weeks, and patients in cohort C (15 patients, 25 samples) received nivolumab + ipilimumab for 6 weeks. The included raw transcriptome sequencing data in fastq format was generated using Illumina NovaSeq 6000.

Request Access

Data Access Committee of the Kok group, NKI.

To request access to the datasets, please provide the following information in your Data Access Request: - Recipient and Recipient Institution - Details of dataset requested, i.e. EGA Study and Dataset Accession Number(s) - Brief abstract of the Project in which the Data will be used (500 words max.) - All Individuals who will be allowed access to the requested datasets by the Recipient Institution After receipt and review of your Data Access Request by the Data Access Committee, you will receive a Data Transfer Agreement to be completed, signed and returned to KT&C and the Data Access Committee, prior to being granted access to the requested dataset(s). For the avoidance of doubt, the Data Access Committee reserves the right to withhold granting access.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000567 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00008560140 fastq.gz 886.8 MB
EGAF00008560141 fastq.gz 1.0 GB
EGAF00008560142 fastq.gz 1.0 GB
EGAF00008560143 fastq.gz 688.3 MB
EGAF00008560144 fastq.gz 830.0 MB
EGAF00008560145 fastq.gz 866.6 MB
EGAF00008560146 fastq.gz 758.3 MB
EGAF00008560147 fastq.gz 877.6 MB
EGAF00008560148 fastq.gz 849.2 MB
EGAF00008560149 fastq.gz 1.3 GB
EGAF00008560151 fastq.gz 882.0 MB
EGAF00008560152 fastq.gz 894.0 MB
EGAF00008560153 fastq.gz 799.9 MB
EGAF00008560154 fastq.gz 875.8 MB
EGAF00008560155 fastq.gz 762.6 MB
EGAF00008560156 fastq.gz 703.3 MB
EGAF00008560157 fastq.gz 858.2 MB
EGAF00008560158 fastq.gz 922.1 MB
EGAF00008560159 fastq.gz 890.7 MB
EGAF00008560160 fastq.gz 867.7 MB
EGAF00008560161 fastq.gz 939.0 MB
EGAF00008560162 fastq.gz 1.2 GB
EGAF00008560163 fastq.gz 937.2 MB
EGAF00008560164 fastq.gz 1.3 GB
EGAF00008560165 fastq.gz 885.8 MB
EGAF00008560166 fastq.gz 1.3 GB
EGAF00008560168 fastq.gz 1.1 GB
EGAF00008560169 fastq.gz 787.7 MB
EGAF00008560170 fastq.gz 848.6 MB
EGAF00008560171 fastq.gz 990.3 MB
EGAF00008560172 fastq.gz 913.5 MB
EGAF00008560173 fastq.gz 910.2 MB
EGAF00008560175 fastq.gz 1.0 GB
EGAF00008560176 fastq.gz 668.5 MB
EGAF00008560177 fastq.gz 1.1 GB
EGAF00008560178 fastq.gz 1.0 GB
EGAF00008560179 fastq.gz 742.1 MB
EGAF00008560180 fastq.gz 1.1 GB
EGAF00008560181 fastq.gz 733.7 MB
EGAF00008560182 fastq.gz 988.4 MB
EGAF00008560183 fastq.gz 662.7 MB
EGAF00008560184 fastq.gz 744.0 MB
EGAF00008560185 fastq.gz 1.0 GB
EGAF00008560187 fastq.gz 1.0 GB
EGAF00008560193 fastq.gz 1.1 GB
EGAF00008560194 fastq.gz 780.1 MB
EGAF00008560195 fastq.gz 816.6 MB
EGAF00008560196 fastq.gz 837.9 MB
EGAF00008560197 fastq.gz 807.1 MB
EGAF00008560198 fastq.gz 1.1 GB
EGAF00008560200 fastq.gz 955.6 MB
EGAF00008560201 fastq.gz 893.5 MB
EGAF00008560202 fastq.gz 914.9 MB
EGAF00008560203 fastq.gz 940.7 MB
EGAF00008560205 fastq.gz 796.4 MB
EGAF00008560206 fastq.gz 677.0 MB
EGAF00008560207 fastq.gz 721.1 MB
EGAF00008560208 fastq.gz 1.1 GB
EGAF00008560209 fastq.gz 1.0 GB
EGAF00008560210 fastq.gz 735.5 MB
EGAF00008560216 fastq.gz 862.8 MB
EGAF00008560217 fastq.gz 679.3 MB
EGAF00008560218 fastq.gz 974.2 MB
EGAF00008560219 fastq.gz 841.8 MB
EGAF00008560220 fastq.gz 930.8 MB
EGAF00008560228 fastq.gz 902.8 MB
EGAF00008560229 fastq.gz 709.4 MB
EGAF00008560230 fastq.gz 647.7 MB
EGAF00008560231 fastq.gz 772.5 MB
EGAF00008560232 fastq.gz 1.0 GB
EGAF00008560233 fastq.gz 1.1 GB
EGAF00008560235 fastq.gz 644.9 MB
EGAF00008560236 fastq.gz 805.7 MB
EGAF00008560237 fastq.gz 845.6 MB
EGAF00008560238 fastq.gz 908.2 MB
EGAF00008560240 fastq.gz 802.0 MB
EGAF00008560241 fastq.gz 969.4 MB
EGAF00008560262 fastq.gz 1.1 GB
EGAF00008560264 fastq.gz 886.3 MB
EGAF00008560265 fastq.gz 956.0 MB
EGAF00008560266 fastq.gz 598.8 MB
EGAF00008560267 fastq.gz 617.1 MB
EGAF00008560268 fastq.gz 1.0 GB
EGAF00008560269 fastq.gz 936.1 MB
EGAF00008560270 fastq.gz 906.0 MB
EGAF00008560277 fastq.gz 1.1 GB
EGAF00008560278 fastq.gz 822.6 MB
EGAF00008560282 fastq.gz 1.3 GB
EGAF00008560285 fastq.gz 925.4 MB
EGAF00008560286 fastq.gz 719.1 MB
EGAF00008560287 fastq.gz 1.1 GB
EGAF00008560288 fastq.gz 835.0 MB
EGAF00008560289 fastq.gz 993.3 MB
EGAF00008560290 fastq.gz 1.2 GB
EGAF00008560291 fastq.gz 971.3 MB
EGAF00008560305 fastq.gz 966.7 MB
EGAF00008560306 fastq.gz 946.9 MB
EGAF00008560307 fastq.gz 1.0 GB
EGAF00008560316 fastq.gz 1.1 GB
EGAF00008560317 fastq.gz 977.0 MB
EGAF00008560319 fastq.gz 1.1 GB
EGAF00008560320 fastq.gz 683.8 MB
EGAF00008560321 fastq.gz 776.8 MB
EGAF00008560323 fastq.gz 1.0 GB
EGAF00008560326 fastq.gz 764.1 MB
EGAF00008560327 fastq.gz 967.3 MB
EGAF00008560328 fastq.gz 621.1 MB
EGAF00008560329 fastq.gz 956.1 MB
EGAF00008560341 fastq.gz 1.1 GB
EGAF00008560381 fastq.gz 1.2 GB
EGAF00008560382 fastq.gz 939.9 MB
EGAF00008560384 fastq.gz 1.0 GB
EGAF00008560401 fastq.gz 1.1 GB
EGAF00008560402 fastq.gz 969.4 MB
EGAF00008560403 fastq.gz 1.2 GB
EGAF00008560404 fastq.gz 993.2 MB
EGAF00008560405 fastq.gz 964.2 MB
EGAF00008560407 fastq.gz 976.6 MB
EGAF00008560496 fastq.gz 1.1 GB
EGAF00008560498 fastq.gz 1.1 GB
EGAF00008560546 fastq.gz 920.7 MB
EGAF00008560547 fastq.gz 774.5 MB
EGAF00008560549 fastq.gz 907.1 MB
EGAF00008560550 fastq.gz 654.4 MB
EGAF00008560587 fastq.gz 697.3 MB
EGAF00008560634 fastq.gz 1.3 GB
EGAF00008560641 fastq.gz 970.9 MB
EGAF00008560696 fastq.gz 1.1 GB
EGAF00008560715 fastq.gz 1.0 GB
EGAF00008560745 fastq.gz 981.6 MB
EGAF00008560750 fastq.gz 1.3 GB
EGAF00008560751 fastq.gz 1.2 GB
EGAF00008560752 fastq.gz 1.0 GB
EGAF00008560826 fastq.gz 1.0 GB
EGAF00008560828 fastq.gz 1.0 GB
EGAF00008560830 fastq.gz 984.8 MB
EGAF00008560838 fastq.gz 1.2 GB
EGAF00008560839 fastq.gz 1.0 GB
EGAF00008560868 fastq.gz 1.0 GB
EGAF00008560877 fastq.gz 1.1 GB
EGAF00008560947 fastq.gz 978.5 MB
EGAF00008561050 fastq.gz 1.2 GB
EGAF00008561182 fastq.gz 1.0 GB
EGAF00008561189 fastq.gz 1.0 GB
EGAF00008561205 fastq.gz 992.5 MB
EGAF00008561207 fastq.gz 1.0 GB
EGAF00008561210 fastq.gz 1.1 GB
EGAF00008561292 fastq.gz 1.1 GB
EGAF00008561335 fastq.gz 1.2 GB
EGAF00008561339 fastq.gz 1.1 GB
EGAF00008561389 fastq.gz 1.1 GB
EGAF00008561390 fastq.gz 1.1 GB
EGAF00008561486 fastq.gz 949.0 MB
EGAF00008561578 fastq.gz 1.1 GB
EGAF00008561579 fastq.gz 1.0 GB
EGAF00008561581 fastq.gz 977.6 MB
156 Files (147.7 GB)