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MCRI-WEHI GRREAT Ataxia Sequencing Cohort

This study evaluated the effectiveness of long- and short-read sequencing as diagnostic tools for CA. We recruited 110 individuals (48 females, 62 males) with a clinical diagnosis of CA. Short-read genome sequencing (SR-GS) was performed to identify pathogenic RE and also non-RE variants in 356 genes associated with CA. Long-read adaptive sequencing (LR-AS) was performed to identify pathogenic RE in 67 genes.

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DAA_European Genome-phenome Archive_Neurogenetics (BLC)_08-2024

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Table of Contents Section I: Contact and Project Information 2 Section II: Access Agreement (DAA) 4 Section III: Terms and Conditions 5 Agreement 7 Appendix I 8   Section I: Contact and Project Information A. Data Recipient (including contact details) Please ensure that a full postal address and a valid Institutional email address are included. Name: Institution’s Legal Name: Institutional Postal Address: Institutional E-mail Address: Website of the Institution: B. Authorised Representative of the Data Recipient Name: Position: Affiliation: Institutional Postal Address: Institutional E-mail Address: C. Data Controller(s) (including contact details) Please ensure that a full postal address and a valid Institutional email address are included Name: Institution’s Legal Name: Institutional Postal Address: Institutional E-mail Address: Website of the Institution: D. Authorised Representative of the Data Controller(s) Name: Position: Affiliation: Institutional Postal Address: Institutional E-mail Address E. Title of the Proposed Research Project F. Research Project (Scientific Abstract): Please provide a clear description of the Project, its stakeholders, its main question and its relevance to the research domain addressed, its specific aims, and duration. Note that any use of the Data, if approved, must fall under the framework of the described Project (300 words max). G. Research Credentials Please provide a list of three Publications, relevant to the Project description, of which the Data Recipient is author or co-author. If the Data Recipient has not authored or co-authored three relevant Publications, please describe their relevant expertise or experience in no more than 150 words; also, notify how the research project will be carried out (e.g. available funding, infrastructure and so on).   Section II: Access Agreement (DAA) Definitions GDPR: This DAA makes both parties compliant with the Regulation (EU) 2016/679 of the European Parliament and of the Council, that is, the General Data Protection Regulation (herein referred to as the ‘GDPR’). Data: Refers to controlled access data (the Data). Under this Agreement, the Data is pseudonymised. Data Access/Transfer: Refers to an Institution’s right to request access to the Data and retrieve them from the Data Controller’s Institution upon approval of this DAA by the corresponding DAC within the Data Controller’s Institution. Data Handling: Refers to an Institution’s ability to analyse and manipulate the Data within its own computer network. Data Controller(s): Refers to an Institution, responsible for the generation of the Data and its pseudonymisation. A key-code permitting relinkage to Data Subjects is kept by the Data Controller(s). Data Subject: Refers to any individual who is the source of any Data covered by this Agreement. Data Recipient (‘You’): Refers to the Institution who requests Access to the Data through this Agreement. Authorised Personnel: The individual(s) at the Institution requesting Access to the Data. Research Project: The Project for which You have requested Access to the Data. Publications: refers to and includes, without limitation, to any and all articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research.   Section III: Terms and Conditions In signing this Agreement: 1. You, the Data Recipient, agree to only use the Data for the Purpose of the Project. 2. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. You undertake not to use or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 3. You agree not to attempt to identify Data Subjects. 4. You and your Authorised Personnel agree to take into consideration any usage restrictions (if any), stemming from consent, i.e. the appropriate lawful basis for processing the Data, as well as any usage restrictions stemming from any applicable internal policies of your Institution. 5. You agree that in handling this Data You will follow an up-to-date information technology (IT) policy that must include, at a minimum, the following items: a. Logging and auditing of Access to the Data and to the computer network; b. Password protection to computer network and/or strong data encryption; c. Virus and malware protection to computers on the computer network; d. Secure backup procedure; 6. You acknowledge that Access to the Data is granted for the duration of the Research Project described in Section I. Any use of the Data for a Project of another research field or area will need to be approved under a new Agreement. 7. You recognize that nothing in this Agreement shall operate to transfer to You any intellectual property rights to the Data. 8. You agree not to make intellectual property claims on the Data and not to use intellectual property protection in ways that would prevent or block Access to, or use of, any element of the Data. 9. You can elect to perform further Research that would add intellectual and resource capital to the Data, and decide to obtain intellectual property rights on these downstream discoveries. In consideration of MCRI supplying the Data to the Recipient, the Recipient will, as soon as practicable, inform MCRI in writing of any and all findings or information it has derived from the Data (Results) and of any new Intellectual Property Rights developed from its use of the Data. The Recipient and MCRI will enter into negotiations to discuss their respective ownership rights in relation to any new Intellectual Property Rights in the Results. 10. You agree that the Data Controller 1) bears no legal responsibility for the accuracy or comprehensiveness of the Data; 2) accepts no liability for indirect, consequential, or incidental damages or losses arising from use of the Data; and 3) bears no responsibility for the further analysis or interpretation of these Data over and above that published by the Controller(s). 11. You agree to hold the Data Subject(s) and Data Controller(s) harmless and to defend and indemnify all these parties against all liabilities, demands, damages, expenses, and losses arising out of Your use for any Purpose of the Data. 12. You agree to a moratorium on publishing global analyses of the dataset until the Data Controller(s) have published their own global analysis or twelve (12) months, the maximum, have passed from the time the Data were deposited, whichever occurs first. You acknowledge that prompt publication or public disclosure of the results of the Research Project is encouraged. 13. You agree to acknowledge the contribution of the Data Controller(s) in all oral and written presentations, disclosures, and Publications resulting from all analyses of the Data. 14. You agree to use the Data in Your laboratory. Any Authorised Personnel shall work under Your direct supervision. You agree to distribute a copy of these terms to the Authorised Personnel. 15. You may not transfer any information included in the Data to anyone unless specifically designated in the Research Project, or by prior specific or general written authorisation of the Data Controller(s) responsible for the generation of the original Data in each case. 16. You may not transfer the Data itself to anyone outside the Institution, unless the Controller(s) has (have) approved such transfer and its terms in writing. 17. Should You wish to share the Data with an external collaborator, the external collaborator must complete a separate Data Access Agreement. 18. You shall ensure that ‘all’ who have Access to the Data, namely You and Your Authorised Personnel, will be listed out, and are made aware and be bound by the terms of this Agreement. You remain solely and fully responsible for Your Authorised Personnel’s non-compliance with the provision of the Agreement and/or applicable laws. 19. In case of a breach of security resulting from ‘accidental’ use of Data by You and Your Authorised Personnel, which leads to disclosure of Data, then You must report this to Data Controller(s) within 72 hours maximum, and follow any relevant rule as provided by the GDPR. 20. In case of a ‘non-accidental or minor’ breach of DAA by You, You will further be required to destroy any Data held. 21. You accept that this Agreement will terminate immediately upon ‘any’ breach by You, or its termination (see Section I). 22. You endeavour to settle any dispute with the Data Controller(s) amicably. If you are unable to reach an Agreement, you will meet and negotiate in good faith in an effort to resolve the issue. If the issue has not been resolved within a reasonable period (e.g. 30 calendar days), the dispute shall be referred to the Court of Arbitration in accordance with International Chamber of Commerce Rules for Arbitration (ICC Rules) for the time being in force. The language to be used in the arbitral proceedings shall be English. The award of the arbitration will be final and binding upon the parties concerned. 23. This Agreement (and any dispute, controversy, proceedings, or claim of whatever nature arising out of it or its formation) shall be interpreted, governed by and construed in accordance with the laws of the State of Victoria, Australia, and the Commonwealth Government of Australia and the parties submit to the non-exclusive jurisdiction of the Victorian or Federal Courts.   Agreement I have read, understood and agree to abide by the terms and conditions stipulated in this Data Access Agreement. Data Recipient: Name: Title and position: Signature: Date: Data Controller(s) or Authorised Representative of the Data Controller(s): Name: Title and position (if applicable): Signature: Date:   Appendix I Data requested: Describe the data requested including, if relevant, publication details and any accession numbers associated with the data, for example the EGA Study and Dataset Accession Number(s).

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000573 Whole Genome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000189834 cram 17.2 GB
EGAF50000189835 cram 24.6 GB
EGAF50000189836 cram 17.3 GB
EGAF50000189837 cram 13.3 GB
EGAF50000189838 cram 19.5 GB
EGAF50000189839 cram 28.3 GB
EGAF50000189840 cram 22.9 GB
EGAF50000189841 cram 16.1 GB
EGAF50000189842 cram 19.5 GB
EGAF50000189843 cram 16.6 GB
EGAF50000189844 cram 19.8 GB
EGAF50000189845 cram 21.1 GB
EGAF50000189846 cram 18.8 GB
EGAF50000189847 cram 14.4 GB
EGAF50000189848 cram 14.9 GB
EGAF50000189849 cram 15.7 GB
EGAF50000189850 cram 14.9 GB
EGAF50000189851 cram 22.7 GB
EGAF50000189852 cram 16.9 GB
EGAF50000189853 cram 14.0 GB
EGAF50000189854 cram 17.6 GB
EGAF50000189855 cram 20.9 GB
EGAF50000189856 cram 15.1 GB
EGAF50000189857 cram 22.2 GB
EGAF50000189858 cram 15.0 GB
EGAF50000189859 cram 19.4 GB
EGAF50000189860 cram 26.0 GB
EGAF50000189861 cram 22.0 GB
EGAF50000189862 cram 16.5 GB
EGAF50000189863 cram 15.7 GB
EGAF50000189864 cram 19.4 GB
EGAF50000189865 cram 17.3 GB
EGAF50000189866 cram 24.4 GB
EGAF50000189867 cram 19.5 GB
EGAF50000189868 cram 19.3 GB
EGAF50000189869 cram 20.7 GB
EGAF50000189870 cram 20.7 GB
EGAF50000189871 cram 14.0 GB
EGAF50000189872 cram 16.9 GB
EGAF50000189873 cram 24.5 GB
EGAF50000189874 cram 14.2 GB
EGAF50000189875 cram 15.2 GB
EGAF50000189876 cram 15.1 GB
EGAF50000189877 cram 14.2 GB
EGAF50000189878 cram 14.6 GB
EGAF50000189879 cram 15.0 GB
EGAF50000189880 cram 15.0 GB
EGAF50000189881 cram 15.2 GB
EGAF50000189882 cram 15.9 GB
EGAF50000189883 cram 24.0 GB
EGAF50000189884 cram 20.8 GB
EGAF50000189885 cram 19.7 GB
EGAF50000189886 cram 13.1 GB
EGAF50000189887 cram 21.4 GB
EGAF50000189888 cram 20.1 GB
EGAF50000189889 cram 4.0 GB
EGAF50000189890 cram 910.3 MB
EGAF50000189891 cram 3.7 GB
EGAF50000189892 cram 2.4 GB
EGAF50000189893 cram 1.2 GB
EGAF50000189894 cram 4.0 GB
EGAF50000189895 cram 9.2 GB
EGAF50000189896 cram 9.7 GB
EGAF50000189897 cram 5.0 GB
EGAF50000189898 cram 4.4 GB
EGAF50000189899 cram 2.8 GB
EGAF50000189900 cram 5.3 GB
EGAF50000189901 cram 2.8 GB
EGAF50000189902 cram 1.1 GB
EGAF50000189903 cram 10.1 GB
EGAF50000189904 cram 8.0 GB
EGAF50000189905 cram 3.0 GB
EGAF50000189906 cram 2.6 GB
EGAF50000189907 cram 2.1 GB
EGAF50000189908 cram 15.9 GB
EGAF50000189909 cram 3.9 GB
EGAF50000189910 cram 1.0 GB
EGAF50000189911 cram 4.7 GB
EGAF50000189912 cram 3.6 GB
EGAF50000189913 cram 15.9 GB
EGAF50000189914 cram 7.1 GB
EGAF50000189915 cram 1.1 GB
EGAF50000189916 cram 6.3 GB
EGAF50000189917 cram 5.6 GB
EGAF50000189918 cram 3.5 GB
EGAF50000189919 cram 13.4 GB
EGAF50000189920 cram 6.5 GB
EGAF50000189921 cram 5.8 GB
EGAF50000189922 cram 7.2 GB
EGAF50000189923 cram 4.1 GB
EGAF50000189924 cram 1.8 GB
EGAF50000189925 cram 12.1 GB
EGAF50000189926 cram 4.3 GB
EGAF50000189927 cram 11.0 GB
EGAF50000189928 cram 6.8 GB
EGAF50000189929 cram 8.2 GB
EGAF50000189930 cram 1.7 GB
EGAF50000189931 cram 6.7 GB
EGAF50000189932 cram 7.8 GB
EGAF50000189933 cram 11.9 GB
EGAF50000189934 cram 8.5 GB
EGAF50000189935 cram 6.1 GB
EGAF50000189936 cram 8.7 GB
EGAF50000189937 cram 6.1 GB
EGAF50000189938 cram 7.6 GB
EGAF50000189939 cram 4.7 GB
EGAF50000189940 cram 3.6 GB
EGAF50000189941 cram 6.2 GB
EGAF50000189942 cram 5.0 GB
EGAF50000189943 cram 7.6 GB
EGAF50000189944 cram 10.0 GB
EGAF50000189945 cram 7.5 GB
EGAF50000189946 cram 14.7 GB
EGAF50000189947 cram 6.1 GB
EGAF50000189948 cram 11.3 GB
EGAF50000189949 cram 11.0 GB
EGAF50000189950 cram 7.0 GB
EGAF50000189951 cram 9.7 GB
EGAF50000189952 cram 10.4 GB
EGAF50000189953 cram 11.0 GB
EGAF50000189954 cram 8.9 GB
EGAF50000189955 cram 8.6 GB
EGAF50000189956 cram 5.3 GB
EGAF50000189957 cram 9.3 GB
EGAF50000189958 cram 7.2 GB
EGAF50000189959 cram 13.7 GB
EGAF50000189960 cram 8.7 GB
EGAF50000189961 cram 11.1 GB
EGAF50000189962 cram 6.1 GB
EGAF50000189963 cram 5.2 GB
EGAF50000189964 cram 11.2 GB
EGAF50000189965 cram 14.3 GB
EGAF50000189966 cram 9.6 GB
EGAF50000189967 cram 15.0 GB
EGAF50000189968 cram 14.2 GB
EGAF50000189969 cram 19.0 GB
EGAF50000189970 cram 19.1 GB
EGAF50000189971 cram 18.5 GB
EGAF50000189972 cram 16.9 GB
EGAF50000189973 cram 16.8 GB
EGAF50000189974 cram 15.5 GB
EGAF50000189975 cram 20.7 GB
EGAF50000189976 cram 21.4 GB
EGAF50000189977 cram 19.8 GB
EGAF50000189978 cram 22.7 GB
EGAF50000189979 cram 20.4 GB
EGAF50000189980 cram 17.8 GB
EGAF50000189981 cram 13.7 GB
EGAF50000189982 cram 14.3 GB
EGAF50000189983 cram 7.2 GB
EGAF50000189984 cram 8.3 GB
EGAF50000189985 cram 13.6 GB
EGAF50000189986 cram 4.0 GB
EGAF50000189987 cram 14.3 GB
EGAF50000189988 cram 16.7 GB
EGAF50000189989 cram 20.3 GB
EGAF50000189990 cram 25.1 GB
EGAF50000189991 cram 16.0 GB
EGAF50000189992 cram 5.3 GB
EGAF50000189993 cram 11.5 GB
EGAF50000189994 cram 9.4 GB
EGAF50000189995 cram 10.8 GB
EGAF50000189996 cram 10.9 GB
EGAF50000189997 cram 5.7 GB
EGAF50000189998 cram 15.3 GB
EGAF50000189999 cram 20.0 GB
EGAF50000190000 cram 23.2 GB
EGAF50000190001 cram 17.6 GB
EGAF50000190002 cram 4.9 GB
EGAF50000190003 cram 19.5 GB
EGAF50000190004 cram 14.3 GB
EGAF50000190005 cram 15.6 GB
EGAF50000190006 cram 20.0 GB
EGAF50000190007 cram 21.3 GB
EGAF50000190008 cram 15.7 GB
EGAF50000190009 cram 3.3 GB
EGAF50000190010 cram 14.3 GB
EGAF50000190011 cram 6.9 GB
EGAF50000190012 cram 18.8 GB
EGAF50000190013 cram 8.5 GB
EGAF50000190014 cram 9.2 GB
EGAF50000190015 cram 18.5 GB
EGAF50000190016 cram 19.9 GB
EGAF50000190017 cram 21.1 GB
EGAF50000190018 cram 18.5 GB
EGAF50000190019 cram 29.3 GB
EGAF50000190020 cram 5.7 GB
EGAF50000190021 cram 7.0 GB
EGAF50000190022 cram 21.3 GB
EGAF50000190023 cram 18.1 GB
EGAF50000190024 cram 20.3 GB
EGAF50000190025 cram 21.0 GB
EGAF50000190026 cram 21.7 GB
EGAF50000190027 cram 2.2 GB
EGAF50000190028 cram 3.6 GB
EGAF50000190029 cram 8.2 GB
EGAF50000190030 cram 20.9 GB
EGAF50000190031 cram 20.5 GB
EGAF50000190032 cram 16.2 GB
EGAF50000190033 cram 15.1 GB
EGAF50000190034 cram 5.0 GB
EGAF50000190035 cram 8.4 GB
EGAF50000190036 cram 5.7 GB
EGAF50000190037 cram 24.9 GB
EGAF50000190038 cram 14.9 GB
EGAF50000190039 cram 3.9 GB
EGAF50000190040 cram 12.3 GB
EGAF50000190041 cram 19.1 GB
EGAF50000190042 cram 23.3 GB
EGAF50000190043 cram 1.1 GB
EGAF50000190044 cram 3.0 GB
EGAF50000190045 cram 6.5 GB
EGAF50000190046 cram 12.3 GB
EGAF50000190047 cram 23.6 GB
EGAF50000190048 cram 21.5 GB
EGAF50000190049 cram 16.7 GB
EGAF50000190050 cram 16.5 GB
EGAF50000190051 cram 17.5 GB
EGAF50000190052 cram 14.8 GB
EGAF50000190053 cram 17.7 GB
220 Files (2.8 TB)