Single cell whole genome sequencing of luminal breast epithelial cells from wildtype and BRCA mutation carriers
Single cell whole genome sequencing was done using DLP+ (https://doi.org/10.1016/j.cell.2019.10.026) on luminal breast epithelial cells from wildtype and BRCA mutation carriers. Each BAM file is a merged BAM from single cells from a single sample, and the cells can be uniquely identified by their @RG group. Only high quality cells were kept, thus there are large differences in BAM sizes. The same sample/patient can be found across multiple BAM files to accumulate more cells, sometimes the same patient will have multiple FACS sorted cell types also split by BAMs.
- 14/10/2024
- 104 samples
- DAC: EGAC00000000011
- Technology: unspecified
- RS DUO:0000012 (version: 2021-02-23)research specific restrictionsThis data use modifier indicates that use is limited to studies of a certain research type.
- TS DUO:0000025 (version: 2021-02-23)time limit on useThis data use modifier indicates that use is approved for a specific number of months.
BC Cancer, part of the Provincial Health Services Authority - Data Access Policy
Access to this data is controlled. There are a number of steps that a researcher must take to obtain access to this data, including execution of a Data Access Agreement between the institutions. The process is overseen by the Technology Development Office; please contact our general email address TDOadmin@phsa.ca. Please only click the "request data" button on the EGA website after a Data Access Agreement is fully executed.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001007716 | Whole Genome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF50000202264 | bam | 6.7 GB | ||
| EGAF50000202265 | bam | 66.2 GB | ||
| EGAF50000202266 | bam | 66.8 GB | ||
| EGAF50000202267 | bam | 15.7 GB | ||
| EGAF50000202268 | bam | 63.4 GB | ||
| EGAF50000202269 | bam | 66.8 GB | ||
| EGAF50000202270 | bam | 16.5 GB | ||
| EGAF50000202271 | bam | 71.5 GB | ||
| EGAF50000202272 | bam | 4.5 GB | ||
| EGAF50000202273 | bam | 35.1 GB | ||
| EGAF50000202274 | bam | 63.7 GB | ||
| EGAF50000202275 | bam | 39.4 GB | ||
| EGAF50000202276 | bam | 54.9 GB | ||
| EGAF50000202277 | bam | 68.6 GB | ||
| EGAF50000202278 | bam | 65.6 GB | ||
| EGAF50000202279 | bam | 76.2 GB | ||
| EGAF50000202280 | bam | 9.1 GB | ||
| EGAF50000202281 | bam | 66.2 GB | ||
| EGAF50000202282 | bam | 26.1 GB | ||
| EGAF50000202283 | bam | 14.7 GB | ||
| EGAF50000202284 | bam | 37.7 GB | ||
| EGAF50000202285 | bam | 71.9 GB | ||
| EGAF50000202286 | bam | 27.4 GB | ||
| EGAF50000202287 | bam | 13.5 GB | ||
| EGAF50000202288 | bam | 35.2 GB | ||
| EGAF50000202289 | bam | 76.5 GB | ||
| EGAF50000202290 | bam | 14.3 GB | ||
| EGAF50000202291 | bam | 17.3 GB | ||
| EGAF50000202292 | bam | 46.9 GB | ||
| EGAF50000202293 | bam | 55.6 GB | ||
| EGAF50000202294 | bam | 19.1 GB | ||
| EGAF50000202295 | bam | 69.4 GB | ||
| EGAF50000202296 | bam | 3.7 GB | ||
| EGAF50000202297 | bam | 8.9 GB | ||
| EGAF50000202298 | bam | 5.5 GB | ||
| EGAF50000202299 | bam | 2.9 GB | ||
| EGAF50000202300 | bam | 5.2 GB | ||
| EGAF50000202301 | bam | 20.8 GB | ||
| EGAF50000202302 | bam | 57.0 GB | ||
| EGAF50000202303 | bam | 44.5 GB | ||
| EGAF50000202304 | bam | 56.5 GB | ||
| EGAF50000202305 | bam | 16.3 GB | ||
| EGAF50000202306 | bam | 89.8 GB | ||
| EGAF50000202307 | bam | 132.5 GB | ||
| EGAF50000202308 | bam | 103.7 GB | ||
| EGAF50000202309 | bam | 35.9 GB | ||
| EGAF50000202310 | bam | 152.7 GB | ||
| EGAF50000202311 | bam | 17.4 GB | ||
| EGAF50000202312 | bam | 36.7 GB | ||
| EGAF50000202313 | bam | 4.8 GB | ||
| EGAF50000202314 | bam | 60.2 GB | ||
| EGAF50000202315 | bam | 144.0 GB | ||
| EGAF50000202316 | bam | 30.9 GB | ||
| EGAF50000202317 | bam | 53.9 GB | ||
| EGAF50000202318 | bam | 3.6 GB | ||
| EGAF50000202319 | bam | 3.0 GB | ||
| EGAF50000202320 | bam | 39.5 GB | ||
| EGAF50000202321 | bam | 4.5 GB | ||
| EGAF50000202322 | bam | 7.1 GB | ||
| EGAF50000202323 | bam | 20.3 GB | ||
| EGAF50000202324 | bam | 10.8 GB | ||
| EGAF50000202325 | bam | 2.8 GB | ||
| EGAF50000202326 | bam | 116.8 GB | ||
| EGAF50000202327 | bam | 12.9 GB | ||
| EGAF50000202328 | bam | 65.1 GB | ||
| EGAF50000202329 | bam | 38.0 GB | ||
| EGAF50000202330 | bam | 33.9 GB | ||
| EGAF50000202331 | bam | 74.7 GB | ||
| EGAF50000202332 | bam | 55.0 GB | ||
| EGAF50000202333 | bam | 64.3 GB | ||
| EGAF50000202334 | bam | 254.2 MB | ||
| EGAF50000202335 | bam | 37.0 GB | ||
| EGAF50000202336 | bam | 71.5 GB | ||
| EGAF50000202337 | bam | 12.2 GB | ||
| EGAF50000202338 | bam | 40.8 GB | ||
| EGAF50000202339 | bam | 32.1 GB | ||
| EGAF50000202340 | bam | 70.4 GB | ||
| EGAF50000202341 | bam | 65.9 GB | ||
| EGAF50000202342 | bam | 55.1 GB | ||
| EGAF50000202343 | bam | 11.4 GB | ||
| EGAF50000202344 | bam | 68.1 GB | ||
| EGAF50000202345 | bam | 63.2 GB | ||
| EGAF50000202346 | bam | 61.0 GB | ||
| EGAF50000202347 | bam | 70.2 GB | ||
| EGAF50000202348 | bam | 35.5 GB | ||
| EGAF50000202349 | bam | 5.2 GB | ||
| EGAF50000202350 | bam | 2.2 GB | ||
| EGAF50000202351 | bam | 49.0 GB | ||
| EGAF50000202352 | bam | 35.5 GB | ||
| EGAF50000202353 | bam | 41.5 GB | ||
| EGAF50000202354 | bam | 42.2 GB | ||
| EGAF50000202355 | bam | 7.3 GB | ||
| EGAF50000202356 | bam | 59.2 GB | ||
| EGAF50000202357 | bam | 38.3 GB | ||
| EGAF50000202358 | bam | 9.5 GB | ||
| EGAF50000202359 | bam | 1.6 GB | ||
| EGAF50000202360 | bam | 44.3 GB | ||
| EGAF50000202361 | bam | 11.9 GB | ||
| EGAF50000202362 | bam | 50.1 GB | ||
| EGAF50000202363 | bam | 30.4 GB | ||
| EGAF50000202364 | bam | 33.3 GB | ||
| EGAF50000202365 | bam | 85.6 GB | ||
| EGAF50000202366 | bam | 54.9 GB | ||
| EGAF50000202367 | bam | 111.0 GB | ||
| EGAF50000202368 | bai | 8.8 MB | ||
| EGAF50000202369 | bai | 9.2 MB | ||
| EGAF50000202370 | bai | 8.5 MB | ||
| EGAF50000202371 | bai | 8.8 MB | ||
| EGAF50000202372 | bai | 8.8 MB | ||
| EGAF50000202373 | bai | 8.2 MB | ||
| EGAF50000202374 | bai | 8.1 MB | ||
| EGAF50000202375 | bai | 8.4 MB | ||
| EGAF50000202376 | bai | 8.7 MB | ||
| EGAF50000202377 | bai | 9.0 MB | ||
| EGAF50000202378 | bai | 6.9 MB | ||
| EGAF50000202379 | bai | 8.6 MB | ||
| EGAF50000202380 | bai | 8.9 MB | ||
| EGAF50000202381 | bai | 8.7 MB | ||
| EGAF50000202382 | bai | 9.0 MB | ||
| EGAF50000202383 | bai | 8.8 MB | ||
| EGAF50000202384 | bai | 9.0 MB | ||
| EGAF50000202385 | bai | 9.0 MB | ||
| EGAF50000202386 | bai | 8.8 MB | ||
| EGAF50000202387 | bai | 9.0 MB | ||
| EGAF50000202388 | bai | 8.8 MB | ||
| EGAF50000202389 | bai | 9.0 MB | ||
| EGAF50000202390 | bai | 8.8 MB | ||
| EGAF50000202391 | bai | 9.0 MB | ||
| EGAF50000202392 | bai | 8.8 MB | ||
| EGAF50000202393 | bai | 8.7 MB | ||
| EGAF50000202394 | bai | 9.0 MB | ||
| EGAF50000202395 | bai | 9.0 MB | ||
| EGAF50000202396 | bai | 8.7 MB | ||
| EGAF50000202397 | bai | 8.9 MB | ||
| EGAF50000202398 | bai | 9.1 MB | ||
| EGAF50000202399 | bai | 8.7 MB | ||
| EGAF50000202400 | bai | 9.2 MB | ||
| EGAF50000202401 | bai | 8.7 MB | ||
| EGAF50000202402 | bai | 8.8 MB | ||
| EGAF50000202403 | bai | 9.0 MB | ||
| EGAF50000202404 | bai | 8.7 MB | ||
| EGAF50000202405 | bai | 8.6 MB | ||
| EGAF50000202406 | bai | 8.8 MB | ||
| EGAF50000202407 | bai | 8.7 MB | ||
| EGAF50000202408 | bai | 8.7 MB | ||
| EGAF50000202409 | bai | 8.8 MB | ||
| EGAF50000202410 | bai | 8.8 MB | ||
| EGAF50000202411 | bai | 8.7 MB | ||
| EGAF50000202412 | bai | 8.8 MB | ||
| EGAF50000202413 | bai | 7.9 MB | ||
| EGAF50000202414 | bai | 8.6 MB | ||
| EGAF50000202415 | bai | 8.7 MB | ||
| EGAF50000202416 | bai | 8.8 MB | ||
| EGAF50000202417 | bai | 8.2 MB | ||
| EGAF50000202418 | bai | 8.0 MB | ||
| EGAF50000202419 | bai | 9.4 MB | ||
| EGAF50000202420 | bai | 9.3 MB | ||
| EGAF50000202421 | bai | 8.8 MB | ||
| EGAF50000202422 | bai | 8.8 MB | ||
| EGAF50000202423 | bai | 9.4 MB | ||
| EGAF50000202424 | bai | 7.5 MB | ||
| EGAF50000202425 | bai | 8.7 MB | ||
| EGAF50000202426 | bai | 8.7 MB | ||
| EGAF50000202427 | bai | 8.9 MB | ||
| EGAF50000202428 | bai | 8.7 MB | ||
| EGAF50000202429 | bai | 8.4 MB | ||
| EGAF50000202430 | bai | 8.6 MB | ||
| EGAF50000202431 | bai | 8.7 MB | ||
| EGAF50000202432 | bai | 8.8 MB | ||
| EGAF50000202433 | bai | 8.8 MB | ||
| EGAF50000202434 | bai | 8.7 MB | ||
| EGAF50000202435 | bai | 8.7 MB | ||
| EGAF50000202436 | bai | 8.7 MB | ||
| EGAF50000202437 | bai | 8.9 MB | ||
| EGAF50000202438 | bai | 8.2 MB | ||
| EGAF50000202439 | bai | 6.7 MB | ||
| EGAF50000202440 | bai | 8.5 MB | ||
| EGAF50000202441 | bai | 8.8 MB | ||
| EGAF50000202442 | bai | 9.0 MB | ||
| EGAF50000202443 | bai | 7.5 MB | ||
| EGAF50000202444 | bai | 8.7 MB | ||
| EGAF50000202445 | bai | 8.8 MB | ||
| EGAF50000202446 | bai | 7.9 MB | ||
| EGAF50000202447 | bai | 7.7 MB | ||
| EGAF50000202448 | bai | 8.4 MB | ||
| EGAF50000202449 | bai | 8.9 MB | ||
| EGAF50000202450 | bai | 7.9 MB | ||
| EGAF50000202451 | bai | 9.0 MB | ||
| EGAF50000202452 | bai | 8.8 MB | ||
| EGAF50000202453 | bai | 8.6 MB | ||
| EGAF50000202454 | bai | 7.4 MB | ||
| EGAF50000202455 | bai | 8.8 MB | ||
| EGAF50000202456 | bai | 8.8 MB | ||
| EGAF50000202457 | bai | 8.7 MB | ||
| EGAF50000202458 | bai | 9.0 MB | ||
| EGAF50000202459 | bai | 8.6 MB | ||
| EGAF50000202460 | bai | 5.9 MB | ||
| EGAF50000202461 | bai | 9.0 MB | ||
| EGAF50000202462 | bai | 8.9 MB | ||
| EGAF50000202463 | bai | 8.9 MB | ||
| EGAF50000202464 | bai | 8.7 MB | ||
| EGAF50000202465 | bai | 8.4 MB | ||
| EGAF50000202466 | bai | 9.0 MB | ||
| EGAF50000202467 | bai | 9.0 MB | ||
| EGAF50000202468 | bai | 9.0 MB | ||
| EGAF50000202469 | bai | 8.5 MB | ||
| EGAF50000202470 | bai | 9.0 MB | ||
| EGAF50000202471 | bai | 9.0 MB | ||
| 208 Files (4.4 TB) | ||||