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Whole exome sequencing of high grade gliomas occurring in teenagers and young adults between the ages of 13 and 30. This study combines methylation array profiling, whole exome sequencing and fusion panel sequencing to provide an integrated molecular description of brain tumours in this age group. Dataset contains 96 BAM files aligned with BWA to GRCh37 from 88 tumours. Tumour DNA was isolated from FFPE material in most cases. 8 germline sequences from peripheral blood DNA are also included.

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ICR_DIPG_Data_Access_Policy

HUMAN GENETIC DATA ACCESS AGREEMENT FOR INSTITUTIONSBetween:(1) The Institute of Cancer Research: Royal Cancer Hospital of 123 Old Brompton Road, London SW7 3RP, UK (“ICR”); and(2) [ please insert the legal name and address of your institution ] (the “Recipient”).In response to the Recipient's request for access to the Data (as set out in Appendix A), ICR and the Recipient agree as follows:1Definitions1.1“DIPG sequencing” shall mean the project undertaken by ICR to identify genetic sequence variants and mutations in Diffuse Intrinsic Pontine Gliomas;1.2 “Data” shall mean all and any human genetic data obtained from DIPG sequencing including the age, sex and tumour pathology of a Data Subject. Explicitly, Data does not include samples or biological materials;1.3 “Data Subject” shall mean the person (irrespective of state of health) to whom Data refers and who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto;1.4 “Intellectual Property” means (i) patents, designs, trade marks and trade names (whether registered or unregistered), copyright and related rights, database rights, know-how and confidential information; (ii) all other intellectual property rights and similar or equivalent rights anywhere in the world which currently exist or are recognised in the future; and (iii) applications, extensions and renewals in relation to any such rights;1.5 “Registered User” shall mean a Researcher (or an individual conducting Research under the direct supervision of that Researcher) that is employed by the Recipient and is bound by confidentiality and non-use obligations in respect of Data and who has signed this Agreement and has received acknowledgement of its acceptance. For the avoidance of doubt, “Registered User” may also include students of the Recipient, visiting academics, contractors, sub-contractors or independent consultants provided that any such individual is bound by confidentiality and non-use obligations no less onerous then those binding the Recipient’s employees;1.6 “Research” shall mean research undertaken by the Recipient that seeks to advance the understanding and treatment of cancer and closely related diseases, and work on statistical methods that may be applied to such Research as set out in ;1.7“Researcher(s)” shall mean an individual or individuals carrying out Research who:(a) in the case of an individual seeking access to Data held solely under the control of ICR, has authored a relevant peer-reviewed article that ICR can locate on PubMed and who is still working in the field; or(b) in the case of an individual seeking access to Data held as part of a wider consortium, is a successful applicant to the consortium data access committee.2Purpose2.1The Recipient agrees to use Data only for Research.3 Confidentiality3.1 The Recipient agrees to preserve, at all times, the confidentiality of Data pertaining to identifiable Data Subjects. In particular, the Recipient undertakes not to use, or attempt to use the Data to deliberately compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. Recipient or Registered Users will not use Data either alone or in conjunction with any other information in any effort whatsoever to establish the individual identities of any Data Subject from whom Data were obtained.4 Data Protection4.1 The Recipient agrees that it, and its Registered Users, are covered by and shall comply with the obligations contained in the Data Protection Act 1998 as amended from time to time, or equivalent national provisions no less onerous then those contained in the Data Protection Act. In particular, the Recipient shall be responsible for ensuring that Registered Users understand and will comply with their duties under such legislation in relation to the handling, storage and use of Data and the rights of Data Subjects.4.2 The Recipient agrees that it, and its Registered Users, shall not analyse or make any use of the Data in such a way that has the potential to:(a) lead to the identification of any Data Subject; or(b) compromise the anonymity of any Data Subject in any way.5 Access and Governance5.1 The Recipient agrees that it shall take all reasonable security precautions to keep the Data confidential, such precautions to be no less onerous than those applied in respect of the Recipient’s own confidential information.5.2 The Recipient agrees to only give access to Data, in whole or part, or any material derived from the Data, to a Registered User. The Recipient agrees that before it gives any Registered User access to Data, it shall first show the Registered User a copy of this Agreement and shall inform the Registered User that he or she must comply with the obligations contained in this Agreement and sign up to the provisions of this Agreement in the form set out at the end of this Agreement. The Recipient shall provide ICR with a copy of the Registered User’s acceptance form within thirty (30) days of the date of acceptance by the Registered User.5.3 The Recipient agrees that it shall only give Registered Users that are not Researchers (including but not limited to students or new researchers to the field) access to the Data if they are supervised by a Researcher who will take responsibility for such Registered Users’ use of the Data.5.4 ICR reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that pertaining in the European Economic Area (EEA).6Errors6.1The Recipient agrees to notify the CGP of any errors detected in the Data.7Data reissue7.1 The Recipient accepts that Data will be reissued from time to time, with suitable versioning. If Data is reissued at the request of sample donors and/or as the result of other ethical scrutiny, the Recipient agrees to destroy all earlier versions of the Data.8Intellectual Property8.1The Recipient recognises that nothing in this Agreement shall operate to transfer to the Recipient or its Registered Users any Intellectual Property rights in or relating to the Data.8.2The Data shall at all times remain the property of ICR or of ICR’s designated assignee. Recipient shall retain title to any Intellectual Property made through the Recipient’s use of the Data, except to the extent such Intellectual property incorporates the Data.8.3 The Recipient and its Registered Users shall have the right to develop Intellectual Property based on comparisons with their own data.9Publications9.1 The Recipient agrees to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the Data, and the role of the CGP and its funders in its distribution. The Recipient agrees to use the acknowledgement wording provided for the relevant Data in its publication. The Recipient will also declare in any such work that those who carried out the original analysis and collection of the Data bear no responsibility for the further analysis or interpretation of it by the Recipient.10Termination of Agreement10.1 This Agreement will terminate immediately upon any breach of the provisions of this Agreement by the Recipient or by the Recipient’s Registered Users.10.2The Recipient accepts that the changing ethical framework of human genetic research may lead to: (i) alteration to the provisions of this Agreement, in which case the Recipient may accept such alterations or terminate this Agreement; or (ii) the withdrawal of this Agreement in extreme circumstances.10.3 Either party shall have the right to terminate this Agreement with immediate effect upon giving written notice of termination to the other party.10.4 In the event that this Agreement is terminated in accordance with this Clause 10 the Recipient shall return or destroy all Data at the direction of ICR.11Costs11.1 The Recipient acknowledges that ICR shall incur costs in providing the Data to the Recipient, including but not limited to administrative costs and the cost of obtaining appropriate data storage devices. The Recipient agrees to pay, on the request of ICR, such reasonable costs as ICR may incur in providing the Data, within thirty (30) days of ICR making such a request for payment.12 Legal statement12.1The Recipient acknowledges that ICR and all other parties involved in the creation, funding or protection of the Data:(a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of the Data; and(b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of the Data, or from the unavailability of, or break in access to the Data for whatever reason.12.2 The Recipient understands that all the Data is protected by copyright and other intellectual property rights, such that duplication or sale of all of or part of the Data on any media is not permitted under any circumstances, except with the prior written consent of ICR.13 Governing Law13.1 This Agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this Agreement or its formation) shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the exclusive jurisdiction of the English courts. AGREED by the parties through their authorised signatoriesINSTITUTE OF CANCER RESEARCHAuthorised Signature:Name:Title:Date:RECIPIENT INSTITUTION:Recipient Name:Address:Telephone No:Email:Researcher Signature:Name:Title:Date:Registered User Signature:Name:Title:Date:Please send completed forms to:Chris Jones PhD FRCPathLeader, Glioma TeamDivisions of Molecular Pathology and Cancer TherapeuticsThe Institute of Cancer Research15 Cotswold Road, Sutton, Surrey SM2 5NG, UKTel: +44 (0)20 8722 4416 | Email: chris.jones@icr.ac.ukICR complies with the requirements of the Data Protection Act 1998 with regard to the collection, storage, processing and disclosure of personal information and is committed to upholding the Act's core Data Protection Principles. Information collected under the Agreement will be used for the purposes of maintaining the Agreement, and may be used for statistical reporting.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000641 Exome Sequencing

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000215567 bai 6.5 MB
EGAF50000215568 bam 7.4 GB
EGAF50000215569 bam 9.2 GB
EGAF50000215570 bam 8.6 GB
EGAF50000215571 bam 4.5 GB
EGAF50000215572 bai 6.7 MB
EGAF50000215573 bam 16.5 GB
EGAF50000215574 bai 7.0 MB
EGAF50000215575 bam 9.8 GB
EGAF50000215576 bai 7.5 MB
EGAF50000215577 bai 8.6 MB
EGAF50000215578 bam 9.7 GB
EGAF50000215579 bai 8.5 MB
EGAF50000215580 bam 10.4 GB
EGAF50000215581 bai 5.6 MB
EGAF50000215582 bam 544.5 MB
EGAF50000215583 bam 12.7 GB
EGAF50000215584 bai 6.9 MB
EGAF50000215585 bam 4.2 GB
EGAF50000215586 bai 6.7 MB
EGAF50000215587 bai 7.0 MB
EGAF50000215588 bai 7.1 MB
EGAF50000215589 bam 9.2 GB
EGAF50000215590 bai 6.3 MB
EGAF50000215591 bam 6.5 GB
EGAF50000215592 bam 4.8 GB
EGAF50000215593 bai 7.6 MB
EGAF50000215594 bam 8.1 GB
EGAF50000215595 bam 9.6 GB
EGAF50000215596 bai 6.4 MB
EGAF50000215597 bam 12.5 GB
EGAF50000215598 bai 6.1 MB
EGAF50000215599 bam 4.5 GB
EGAF50000215600 bai 6.3 MB
EGAF50000215601 bai 6.1 MB
EGAF50000215602 bam 7.3 GB
EGAF50000215603 bam 3.3 GB
EGAF50000215604 bai 6.5 MB
EGAF50000215605 bam 5.4 GB
EGAF50000215606 bai 6.5 MB
EGAF50000215607 bam 6.4 GB
EGAF50000215608 bai 6.6 MB
EGAF50000215609 bam 7.1 GB
EGAF50000215610 bai 6.5 MB
EGAF50000215611 bam 6.1 GB
EGAF50000215612 bai 6.6 MB
EGAF50000215613 bam 7.4 GB
EGAF50000215614 bai 6.4 MB
EGAF50000215615 bai 6.8 MB
EGAF50000215616 bam 10.6 GB
EGAF50000215617 bam 12.2 GB
EGAF50000215618 bam 4.6 GB
EGAF50000215619 bam 5.7 GB
EGAF50000215620 bam 7.9 GB
EGAF50000215621 bai 6.3 MB
EGAF50000215622 bam 4.5 GB
EGAF50000215623 bai 6.6 MB
EGAF50000215624 bam 7.7 GB
EGAF50000215625 bai 6.5 MB
EGAF50000215626 bai 6.3 MB
EGAF50000215627 bam 3.2 GB
EGAF50000215628 bam 7.9 GB
EGAF50000215629 bai 6.5 MB
EGAF50000215630 bam 7.1 GB
EGAF50000215631 bai 7.2 MB
EGAF50000215632 bam 11.9 GB
EGAF50000215633 bai 6.6 MB
EGAF50000215634 bai 6.8 MB
EGAF50000215635 bam 7.8 GB
EGAF50000215636 bam 5.1 GB
EGAF50000215637 bam 7.7 GB
EGAF50000215638 bai 6.8 MB
EGAF50000215639 bai 6.4 MB
EGAF50000215640 bam 4.7 GB
EGAF50000215641 bai 6.4 MB
EGAF50000215642 bai 6.6 MB
EGAF50000215643 bam 6.9 GB
EGAF50000215644 bai 6.6 MB
EGAF50000215645 bai 6.7 MB
EGAF50000215646 bam 8.6 GB
EGAF50000215647 bai 6.5 MB
EGAF50000215648 bai 6.3 MB
EGAF50000215649 bam 4.1 GB
EGAF50000215650 bai 6.3 MB
EGAF50000215651 bam 3.2 GB
EGAF50000215652 bai 6.9 MB
EGAF50000215653 bai 6.5 MB
EGAF50000215654 bam 4.4 GB
EGAF50000215655 bai 6.6 MB
EGAF50000215656 bam 8.6 GB
EGAF50000215657 bai 6.3 MB
EGAF50000215658 bam 4.1 GB
EGAF50000215659 bam 3.4 GB
EGAF50000215660 bai 6.4 MB
EGAF50000215661 bam 7.1 GB
EGAF50000215662 bai 6.3 MB
EGAF50000215663 bam 3.4 GB
EGAF50000215664 bai 6.8 MB
EGAF50000215665 bam 9.7 GB
EGAF50000215666 bam 5.0 GB
EGAF50000215667 bai 6.4 MB
EGAF50000215668 bam 4.7 GB
EGAF50000215669 bai 6.5 MB
EGAF50000215670 bai 6.4 MB
EGAF50000215671 bam 5.7 GB
EGAF50000215672 bam 12.6 GB
EGAF50000215673 bai 6.4 MB
EGAF50000215674 bam 4.9 GB
EGAF50000215675 bai 6.7 MB
EGAF50000215676 bam 8.0 GB
EGAF50000215677 bai 6.7 MB
EGAF50000215678 bam 8.4 GB
EGAF50000215679 bam 4.1 GB
EGAF50000215680 bam 5.5 GB
EGAF50000215681 bai 6.4 MB
EGAF50000215682 bam 4.9 GB
EGAF50000215683 bai 6.4 MB
EGAF50000215684 bai 6.4 MB
EGAF50000215685 bai 6.7 MB
EGAF50000215686 bai 6.5 MB
EGAF50000215687 bam 5.3 GB
EGAF50000215688 bai 6.5 MB
EGAF50000215689 bai 6.3 MB
EGAF50000215690 bam 3.4 GB
EGAF50000215691 bai 6.7 MB
EGAF50000215692 bai 6.5 MB
EGAF50000215693 bam 6.8 GB
EGAF50000215694 bam 8.8 GB
EGAF50000215695 bai 6.5 MB
EGAF50000215696 bam 8.4 GB
EGAF50000215697 bam 8.1 GB
EGAF50000215698 bam 7.7 GB
EGAF50000215699 bai 6.6 MB
EGAF50000215700 bam 6.8 GB
EGAF50000215701 bai 6.6 MB
EGAF50000215702 bam 8.6 GB
EGAF50000215703 bai 6.5 MB
EGAF50000215704 bai 6.8 MB
EGAF50000215705 bam 8.8 GB
EGAF50000215706 bai 6.8 MB
EGAF50000215707 bai 6.8 MB
EGAF50000215708 bai 6.4 MB
EGAF50000215709 bam 4.7 GB
EGAF50000215710 bai 7.1 MB
EGAF50000215711 bam 8.2 GB
EGAF50000215712 bai 6.5 MB
EGAF50000215713 bam 7.7 GB
EGAF50000215714 bam 9.0 GB
EGAF50000215715 bai 6.5 MB
EGAF50000215716 bam 7.5 GB
EGAF50000215717 bam 4.9 GB
EGAF50000215718 bai 6.7 MB
EGAF50000215719 bam 9.0 GB
EGAF50000215720 bai 6.8 MB
EGAF50000215721 bai 6.3 MB
EGAF50000215722 bam 3.7 GB
EGAF50000215723 bam 7.3 GB
EGAF50000215724 bai 6.7 MB
EGAF50000215725 bai 6.7 MB
EGAF50000215726 bam 8.7 GB
EGAF50000215727 bam 8.4 GB
EGAF50000215728 bam 9.3 GB
EGAF50000215729 bai 6.6 MB
EGAF50000215730 bam 7.4 GB
EGAF50000215731 bai 6.9 MB
EGAF50000215732 bam 8.1 GB
EGAF50000215733 bai 6.5 MB
EGAF50000215734 bam 6.5 GB
EGAF50000215735 bai 6.6 MB
EGAF50000215736 bam 5.5 GB
EGAF50000215737 bai 6.7 MB
EGAF50000215738 bam 8.4 GB
EGAF50000215739 bai 6.6 MB
EGAF50000215740 bam 6.8 GB
EGAF50000215741 bai 6.4 MB
EGAF50000215742 bam 4.8 GB
EGAF50000215743 bai 6.7 MB
EGAF50000215744 bai 6.4 MB
EGAF50000215745 bai 6.6 MB
EGAF50000215746 bai 6.4 MB
EGAF50000215747 bai 6.5 MB
EGAF50000215748 bam 7.6 GB
EGAF50000215749 bai 6.3 MB
EGAF50000215750 bai 6.4 MB
EGAF50000215751 bam 4.7 GB
EGAF50000215752 bai 6.8 MB
EGAF50000215753 bam 12.3 GB
EGAF50000215754 bam 8.9 GB
EGAF50000215755 bai 6.6 MB
EGAF50000215756 bam 6.9 GB
EGAF50000215757 bai 6.5 MB
EGAF50000215758 bam 6.9 GB
192 Files (684.2 GB)