RNA-seq from Glioblastoma treated with Indisulam
The dataset includes RNA-sequencing results from four patient-derived glioblastoma cell lines treated with DMSO (vehicle control) or the splicing modulating-drug indisulam (at 6 and 16 hours), resulting in 12 RNA-seq samples. Paired-end sequencing produced 24 FASTQ.gz files. The RNA libraries were prepared using PolyA selection and ERCC spike-ins and sequenced on a NovaSeq platform. This dataset supports the analysis of drug-induced transcriptomic changes and the prediction of subsequent non-canonical tumor-specific antigens (ncTSAs) using the NovumRNA pipeline.
- 19/11/2024
- 12 samples
- DAC: EGAC50000000407
- Technology: Illumina NovaSeq X
Fondazione IRCCS Istituto Neurologico Carlo Besta DAC
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DEFINITIONS • Data means all and any human genetic data (including genome, and transcriptome derived data) and phenotype data obtained from the EGA. • Data Subject means a person whose data is being shared with informed consent / ethical approval by the relevant ethics commission or institutional review board. Data Provider means the Fondazione IRCCS Istituto Neurologico Carlo Besta. • EGA means the European Genome-phenome Archive, a permanent archive of controlled access data generated for biomedical research and deposited to enable data sharing. The EGA is described on the website http://www.ebi.ac.ukl/ega. • User means a researcher whose User Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance. • User Institution means the organization at which the User is employed, affiliated or enrolled. • Collaborator means any third party with whom You share the Data TERMS AND CONDITIONS In signing this Agreement: 1. You agree to use the Data only for research in the areas of biology and medicine. 2. You agree not to use the Data or any part thereof for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator outside the same Institution, the third party must make a separate application for access to the Data. 5. 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You undertake to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 11. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the Data, and the role of Unit of Immunotherapy of Brain Tumors - Fondazione IRCCS Istituto Neurologico Carlo Besta. You agree to use the acknowledgement wording provided for the relevant Data in its publication. You will also declare in any such work that those who carried out the original analysis and collection of the Data bear no responsibility for the further analysis or interpretation of it by You. 12. The data will be handled and stored according to the national and EU legislation in accordance with General Data Protection Regulation 2016/679 (GDPR) Unit of Immunotherapy of Brain Tumors Fondazione IRCCS Istituto Neurologico Carlo Besta Via Celoria 11, 20133, Milan Italy Serena Pellegatta (PI) E-mail: serena.pellegatta@istituto-besta.it Phone 0039-022394-3118
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
Study ID | Study Title | Study Type |
---|---|---|
EGAS50000000680 | RNASeq |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
ID | File Type | Size | Located in | |
---|---|---|---|---|
EGAF50000227583 | fastq.gz | 15.7 GB | ||
EGAF50000227584 | fastq.gz | 15.3 GB | ||
EGAF50000227585 | fastq.gz | 19.8 GB | ||
EGAF50000227586 | fastq.gz | 21.0 GB | ||
EGAF50000227587 | fastq.gz | 18.3 GB | ||
EGAF50000227588 | fastq.gz | 19.4 GB | ||
EGAF50000227589 | fastq.gz | 18.8 GB | ||
EGAF50000227590 | fastq.gz | 18.2 GB | ||
EGAF50000227591 | fastq.gz | 15.2 GB | ||
EGAF50000227592 | fastq.gz | 15.5 GB | ||
EGAF50000227593 | fastq.gz | 24.2 GB | ||
EGAF50000227594 | fastq.gz | 23.6 GB | ||
EGAF50000227595 | fastq.gz | 11.8 GB | ||
EGAF50000227596 | fastq.gz | 12.0 GB | ||
EGAF50000227597 | fastq.gz | 13.7 GB | ||
EGAF50000227598 | fastq.gz | 14.0 GB | ||
EGAF50000227599 | fastq.gz | 13.4 GB | ||
EGAF50000227600 | fastq.gz | 13.1 GB | ||
EGAF50000227601 | fastq.gz | 10.2 GB | ||
EGAF50000227602 | fastq.gz | 10.5 GB | ||
EGAF50000227603 | fastq.gz | 13.7 GB | ||
EGAF50000227604 | fastq.gz | 14.0 GB | ||
EGAF50000227605 | fastq.gz | 8.7 GB | ||
EGAF50000227606 | fastq.gz | 8.5 GB | ||
24 Files (368.6 GB) |