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As the EGA is co-managed by the EMBL-EBI and CRG, files could be located in the UK and/or Spain, as indicated by their respective flags.

Alternatively, files could be located in one of the international Federated EGA nodes, as indicated next to the node's flag.
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RNA sequencing data from 10 patient derived colorectal cancer organoids

This dataset comprises RNA-sequencing data from ten colorectal cancer (CRC) organoids, derived from histologically verified primary tumor tissues of patients undergoing surgical resection. Paired-end sequencing produced 20 FASTQ.gz files. The organoids were cultured in Geltrex-based droplets using PDO culture medium and harvested for RNA extraction. Total RNA was isolated and subjected to full-length mRNA sequencing, producing high-quality RNA-seq data. The dataset includes transcriptomic profiles of seven microsatellite stable (MSS) and three microsatellite instable (MSI) tumors, providing a valuable resource for the analysis of non-canonical tumor-specific antigens (ncTSAs) using the NovumRNA pipeline. This dataset aids in uncovering potential immunotherapy targets in CRC, particularly in hard-to-treat low-TMB MSS cases.

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DUO:0000006
version: 2021-02-23

health or medical or biomedical research

This data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.

DUO:0000046
version: 2021-02-23

non-commercial use only

This data use modifier indicates that use of the data is limited to not-for-profit use.

ICBI Data Access Agreement NovumRNA

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000685 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Quality Report
Located in
i
EGAF50000227808 fastq.gz 9.3 GB Report
EGAF50000227809 fastq.gz 9.5 GB Report
EGAF50000227810 fastq.gz 6.8 GB Report
EGAF50000227811 fastq.gz 7.0 GB Report
EGAF50000227812 fastq.gz 16.6 GB Report
EGAF50000227813 fastq.gz 17.4 GB Report
EGAF50000227814 fastq.gz 15.5 GB Report
EGAF50000227815 fastq.gz 15.0 GB Report
EGAF50000227816 fastq.gz 17.8 GB Report
EGAF50000227817 fastq.gz 18.5 GB Report
EGAF50000227818 fastq.gz 15.5 GB Report
EGAF50000227819 fastq.gz 16.3 GB Report
EGAF50000227820 fastq.gz 7.3 GB Report
EGAF50000227821 fastq.gz 7.5 GB Report
EGAF50000227822 fastq.gz 13.3 GB Report
EGAF50000227823 fastq.gz 14.1 GB Report
EGAF50000227824 fastq.gz 12.0 GB Report
EGAF50000227825 fastq.gz 11.6 GB Report
EGAF50000227826 fastq.gz 8.2 GB Report
EGAF50000227827 fastq.gz 8.5 GB Report
20 Files (247.8 GB)