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RNA-seq of der(1;7)(q10;p10) myeloid neopalsms

This data set contains the RNA-seq BAM files for der(1;7)(q10;p10) MDS cases, -7/del(7q) MDS cases, and OTHER MDS cases. The CD34 selected RNA were collected from patient BM/PB. The dataset was used to identify the unique expression profiles for der(1;7)(q10;p10) MDS cases compared to non-der(1;7)(q10;p10) MDS cases.

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Data access agreement

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom Kyoto University grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Kyoto University and the collaborators listed in Appendix I responsible for the development, organization, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. Kyoto University: Department of Pathology and Tumor Biology, Kyoto University. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organization for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Kyoto University within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Kyoto University prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Kyoto University as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Kyoto University may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Kyoto University. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Japan and shall be subject to the exclusive jurisdiction of the Japanese courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000705 RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000239817 bam 1.7 GB
EGAF50000239819 bam 3.4 GB
EGAF50000239821 bam 2.2 GB
EGAF50000239822 bam 3.5 GB
EGAF50000239824 bam 4.4 GB
EGAF50000239826 bam 4.0 GB
EGAF50000239828 bam 7.5 GB
EGAF50000239830 bam 8.3 GB
EGAF50000239833 bam 5.1 GB
EGAF50000239834 bam 1.8 GB
EGAF50000239835 bam 1.9 GB
EGAF50000239836 bam 3.1 GB
EGAF50000239840 bam 5.6 GB
EGAF50000239841 bam 2.2 GB
EGAF50000239845 bam 5.9 GB
EGAF50000239847 bam 3.4 GB
EGAF50000239849 bam 1.9 GB
EGAF50000239851 bam 3.9 GB
EGAF50000239852 bam 3.4 GB
EGAF50000239855 bam 3.9 GB
EGAF50000239857 bam 2.1 GB
EGAF50000239858 bam 2.8 GB
EGAF50000239859 bam 2.9 GB
EGAF50000239861 bam 3.7 GB
EGAF50000239862 bam 3.9 GB
EGAF50000239865 bam 3.5 GB
EGAF50000239866 bam 2.1 GB
EGAF50000239869 bam 4.4 GB
EGAF50000239870 bam 2.8 GB
EGAF50000239872 bam 1.7 GB
EGAF50000239873 bam 3.7 GB
EGAF50000239876 bam 4.1 GB
EGAF50000239878 bam 3.0 GB
EGAF50000239881 bam 4.6 GB
EGAF50000239882 bam 2.9 GB
EGAF50000239887 bam 12.2 GB
EGAF50000239888 bam 1.3 GB
EGAF50000239891 bam 5.9 GB
EGAF50000239893 bam 2.8 GB
EGAF50000239895 bam 4.0 GB
EGAF50000239898 bam 3.9 GB
EGAF50000239900 bam 3.7 GB
EGAF50000239902 bam 2.1 GB
EGAF50000239904 bam 4.2 GB
EGAF50000239907 bam 3.1 GB
EGAF50000239909 bam 3.3 GB
EGAF50000239911 bam 3.5 GB
EGAF50000239913 bam 4.6 GB
EGAF50000239915 bam 4.7 GB
EGAF50000239916 bam 5.7 GB
EGAF50000239917 bam 4.3 GB
EGAF50000239918 bam 4.1 GB
EGAF50000239919 bam 4.0 GB
EGAF50000239920 bam 2.4 GB
EGAF50000239921 bam 3.5 GB
EGAF50000239922 bam 3.8 GB
EGAF50000239923 bam 4.6 GB
EGAF50000239924 bam 4.9 GB
EGAF50000239925 bam 4.3 GB
EGAF50000239926 bam 3.0 GB
EGAF50000239927 bam 5.1 GB
EGAF50000239928 bam 4.6 GB
EGAF50000239929 bam 3.6 GB
EGAF50000239930 bam 5.5 GB
EGAF50000239931 bam 3.9 GB
EGAF50000239932 bam 2.0 GB
EGAF50000239933 bam 2.7 GB
EGAF50000239934 bam 4.6 GB
EGAF50000239935 bam 3.2 GB
EGAF50000239936 bam 3.4 GB
EGAF50000239937 bam 1.7 GB
EGAF50000239938 bam 4.9 GB
EGAF50000239939 bam 6.0 GB
EGAF50000239940 bam 2.6 GB
EGAF50000239941 bam 3.8 GB
EGAF50000239942 bam 4.4 GB
EGAF50000239943 bam 4.7 GB
EGAF50000239944 bam 4.2 GB
EGAF50000239945 bam 3.3 GB
EGAF50000239946 bam 1.5 GB
EGAF50000239947 bam 3.9 GB
EGAF50000239948 bam 3.0 GB
EGAF50000239949 bam 3.5 GB
EGAF50000239950 bam 3.0 GB
EGAF50000239951 bam 2.9 GB
EGAF50000239952 bam 2.9 GB
EGAF50000239953 bam 2.7 GB
EGAF50000239954 bam 4.9 GB
EGAF50000239955 bam 2.6 GB
EGAF50000239956 bam 2.8 GB
EGAF50000239957 bam 2.8 GB
EGAF50000239958 bam 2.5 GB
EGAF50000239959 bam 4.7 GB
93 Files (346.8 GB)