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FOCUS study

Shallow whole genome sequencing of adavanced colorectal tumors from patients included in the FOCUS clinical trial. Performed to calculate assocations of irinotecan with copy-number alterations. Copy number aberration analysis of 349 enroled patients.

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Data originating from patient samples

The Amsterdam UMC, tumor genome analysis core, allows access to published datasets upon written application and signature of a Data Access Agreement (DAA). In addition, applications to clinical datasets require approval by a Data Access Committee (DAC), who assess whether the proposed work is allowed given patient consent, as well as the scientific purpose. To aid this process we ask you to provide the information below. Requests will be prioritised according to novelty of the research question. Applications with insufficient detail on objectives, justification, and methods/planned analyses are unlikely to be accepted. 1.Reference number for the dataset 2.Full legal name and address of university/institution 3.Name(s) of the Principle Investigator who will use the data: 4.Name(s) and job title(s) of any other investigators who will use the data: 5.Please provide a minimum of one reference to a publication that can be found on PubMed and where the Principle Investigator is an author: 6.How will the data be stored and where will it be stored? 7.What is the proposed study title and what are the objectives and outcomes of the study in which the data will be used 8.Please provide a brief justification or rationale for the proposed study (max 250 words) 9.Please provide a brief description of planned data analyses (max 250 words): 10.Will the results arising from use of the data be used for the creation of products for sale or for any commercial purpose?

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000725 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000255290 bam 254.9 MB
EGAF50000255291 bai 4.6 MB
EGAF50000255292 bai 3.0 MB
EGAF50000255293 bam 643.2 MB
EGAF50000255294 bai 3.3 MB
EGAF50000255295 bam 505.7 MB
EGAF50000255296 bai 4.5 MB
EGAF50000255297 bam 361.8 MB
EGAF50000255298 bai 5.1 MB
EGAF50000255299 bam 99.4 MB
EGAF50000255300 bai 4.1 MB
EGAF50000255301 bam 620.9 MB
EGAF50000255302 bai 2.8 MB
EGAF50000255303 bam 624.8 MB
EGAF50000255304 bai 2.9 MB
EGAF50000255305 bam 710.8 MB
EGAF50000255306 bai 3.3 MB
EGAF50000255307 bam 954.5 MB
EGAF50000255308 bai 3.0 MB
EGAF50000255309 bam 1.1 GB
EGAF50000255310 bai 4.4 MB
EGAF50000255311 bam 323.1 MB
EGAF50000255312 bai 4.8 MB
EGAF50000255313 bam 273.7 MB
EGAF50000255314 bai 3.7 MB
EGAF50000255315 bam 398.9 MB
EGAF50000255316 bai 3.0 MB
EGAF50000255317 bam 605.3 MB
EGAF50000255318 bai 3.2 MB
EGAF50000255319 bam 571.0 MB
EGAF50000255320 bai 4.2 MB
EGAF50000255321 bam 482.6 MB
EGAF50000255322 bai 4.6 MB
EGAF50000255323 bai 3.8 MB
EGAF50000255324 bam 211.1 MB
EGAF50000255325 bam 335.6 MB
EGAF50000255326 bai 4.0 MB
EGAF50000255327 bam 347.9 MB
EGAF50000255328 bai 3.3 MB
EGAF50000255329 bam 527.0 MB
EGAF50000255330 bai 2.4 MB
EGAF50000255331 bam 878.6 MB
EGAF50000255332 bai 4.2 MB
EGAF50000255333 bam 363.0 MB
EGAF50000255334 bai 3.6 MB
EGAF50000255335 bam 867.9 MB
EGAF50000255336 bai 5.2 MB
EGAF50000255337 bam 116.5 MB
EGAF50000255338 bai 3.2 MB
EGAF50000255339 bam 885.0 MB
EGAF50000255340 bai 4.1 MB
EGAF50000255341 bam 320.6 MB
EGAF50000255342 bai 3.4 MB
EGAF50000255343 bam 470.2 MB
EGAF50000255344 bai 3.2 MB
EGAF50000255345 bam 800.4 MB
EGAF50000255346 bai 3.4 MB
EGAF50000255347 bam 602.2 MB
EGAF50000255348 bai 3.4 MB
EGAF50000255349 bai 3.3 MB
EGAF50000255350 bam 452.7 MB
EGAF50000255351 bai 3.4 MB
EGAF50000255352 bam 633.3 MB
EGAF50000255353 bam 496.0 MB
EGAF50000255354 bai 2.6 MB
EGAF50000255355 bam 731.8 MB
EGAF50000255356 bai 3.5 MB
EGAF50000255357 bam 463.3 MB
EGAF50000255358 bai 2.6 MB
EGAF50000255359 bam 757.1 MB
EGAF50000255360 bai 3.3 MB
EGAF50000255361 bai 2.9 MB
EGAF50000255362 bam 616.7 MB
EGAF50000255363 bai 3.1 MB
EGAF50000255364 bam 821.6 MB
EGAF50000255365 bam 651.5 MB
EGAF50000255366 bai 3.8 MB
EGAF50000255367 bam 677.8 MB
EGAF50000255368 bai 4.1 MB
EGAF50000255369 bam 426.0 MB
EGAF50000255370 bai 4.3 MB
EGAF50000255371 bam 304.6 MB
EGAF50000255372 bai 2.8 MB
EGAF50000255373 bam 717.8 MB
EGAF50000255374 bai 3.3 MB
EGAF50000255375 bam 538.9 MB
EGAF50000255376 bai 2.3 MB
EGAF50000255377 bam 1.3 GB
EGAF50000255378 bai 3.3 MB
EGAF50000255379 bam 554.8 MB
EGAF50000255380 bai 3.1 MB
EGAF50000255381 bam 548.2 MB
EGAF50000255382 bai 3.3 MB
EGAF50000255383 bam 606.7 MB
EGAF50000255384 bai 2.3 MB
EGAF50000255385 bam 892.9 MB
EGAF50000255386 bai 3.9 MB
EGAF50000255387 bam 398.7 MB
EGAF50000255388 bai 2.7 MB
EGAF50000255389 bam 921.7 MB
EGAF50000255390 bai 5.3 MB
EGAF50000255391 bam 73.3 MB
EGAF50000255392 bai 3.3 MB
EGAF50000255393 bam 579.5 MB
EGAF50000255394 bai 3.6 MB
EGAF50000255395 bam 565.2 MB
EGAF50000255396 bai 2.9 MB
EGAF50000255397 bam 764.8 MB
EGAF50000255398 bai 3.0 MB
EGAF50000255399 bam 635.4 MB
EGAF50000255400 bai 2.8 MB
EGAF50000255401 bam 759.8 MB
EGAF50000255402 bai 3.0 MB
EGAF50000255403 bam 1.2 GB
EGAF50000255404 bai 2.5 MB
EGAF50000255405 bam 1.2 GB
EGAF50000255406 bai 2.8 MB
EGAF50000255407 bam 699.1 MB
EGAF50000255408 bai 3.7 MB
EGAF50000255409 bam 483.0 MB
EGAF50000255410 bai 5.2 MB
EGAF50000255411 bam 144.5 MB
EGAF50000255412 bai 3.0 MB
EGAF50000255413 bam 596.2 MB
EGAF50000255414 bai 2.6 MB
EGAF50000255415 bam 1.1 GB
EGAF50000255416 bai 2.6 MB
EGAF50000255417 bam 998.6 MB
EGAF50000255418 bai 3.7 MB
EGAF50000255419 bam 659.6 MB
EGAF50000255420 bai 3.3 MB
EGAF50000255421 bam 514.0 MB
EGAF50000255422 bai 4.2 MB
EGAF50000255423 bam 382.5 MB
EGAF50000255424 bai 3.8 MB
EGAF50000255425 bam 543.2 MB
EGAF50000255426 bai 3.4 MB
EGAF50000255427 bam 477.1 MB
EGAF50000255428 bai 4.3 MB
EGAF50000255429 bam 360.3 MB
EGAF50000255430 bai 3.2 MB
EGAF50000255431 bai 4.0 MB
EGAF50000255432 bam 513.5 MB
EGAF50000255433 bam 340.6 MB
EGAF50000255434 bai 5.2 MB
EGAF50000255435 bam 115.3 MB
EGAF50000255436 bai 5.2 MB
EGAF50000255437 bam 126.4 MB
EGAF50000255438 bai 4.8 MB
EGAF50000255439 bam 253.8 MB
EGAF50000255440 bai 3.5 MB
EGAF50000255441 bam 676.5 MB
EGAF50000255442 bai 4.4 MB
EGAF50000255443 bam 393.2 MB
EGAF50000255444 bai 3.1 MB
EGAF50000255445 bam 616.9 MB
EGAF50000255446 bai 2.2 MB
EGAF50000255447 bam 1.8 GB
EGAF50000255448 bai 4.3 MB
EGAF50000255449 bam 369.2 MB
EGAF50000255450 bai 4.1 MB
EGAF50000255451 bam 488.0 MB
EGAF50000255452 bai 3.1 MB
EGAF50000255453 bam 620.2 MB
EGAF50000255454 bai 4.0 MB
EGAF50000255455 bam 434.9 MB
EGAF50000255456 bai 2.7 MB
EGAF50000255457 bam 1.2 GB
EGAF50000255458 bai 3.7 MB
EGAF50000255459 bam 532.9 MB
EGAF50000255460 bai 5.2 MB
EGAF50000255461 bam 79.1 MB
EGAF50000255462 bai 2.3 MB
EGAF50000255463 bam 979.0 MB
EGAF50000255464 bai 3.6 MB
EGAF50000255465 bam 469.5 MB
EGAF50000255466 bai 3.1 MB
EGAF50000255467 bam 554.7 MB
EGAF50000255468 bai 3.2 MB
EGAF50000255469 bam 634.6 MB
EGAF50000255470 bai 4.6 MB
EGAF50000255471 bam 305.3 MB
EGAF50000255472 bai 3.0 MB
EGAF50000255473 bam 577.4 MB
EGAF50000255474 bai 4.1 MB
EGAF50000255475 bam 378.7 MB
EGAF50000255476 bai 2.6 MB
EGAF50000255477 bam 779.3 MB
EGAF50000255478 bai 2.4 MB
EGAF50000255479 bam 2.0 GB
EGAF50000255480 bai 3.6 MB
EGAF50000255481 bam 467.0 MB
EGAF50000255482 bai 3.1 MB
EGAF50000255483 bam 555.1 MB
EGAF50000255484 bai 3.5 MB
EGAF50000255485 bam 474.2 MB
EGAF50000255486 bai 2.5 MB
EGAF50000255487 bam 859.3 MB
EGAF50000255488 bai 3.1 MB
EGAF50000255489 bai 2.4 MB
EGAF50000255490 bam 579.9 MB
EGAF50000255491 bai 4.4 MB
EGAF50000255492 bam 4.8 GB
EGAF50000255493 bam 310.4 MB
EGAF50000255494 bai 3.6 MB
EGAF50000255495 bam 467.0 MB
EGAF50000255496 bai 5.3 MB
EGAF50000255497 bam 54.3 MB
EGAF50000255498 bai 2.6 MB
EGAF50000255499 bam 695.0 MB
EGAF50000255500 bai 5.2 MB
EGAF50000255501 bam 56.6 MB
EGAF50000255502 bai 2.9 MB
EGAF50000255503 bam 642.4 MB
EGAF50000255504 bai 4.8 MB
EGAF50000255505 bam 563.8 MB
EGAF50000255506 bai 3.1 MB
EGAF50000255507 bam 598.7 MB
EGAF50000255508 bai 3.8 MB
EGAF50000255509 bam 692.3 MB
EGAF50000255510 bai 4.5 MB
EGAF50000255511 bam 333.1 MB
EGAF50000255512 bai 3.0 MB
EGAF50000255513 bam 569.7 MB
EGAF50000255514 bai 2.6 MB
EGAF50000255515 bam 711.3 MB
EGAF50000255516 bai 3.0 MB
EGAF50000255517 bam 606.3 MB
EGAF50000255518 bai 3.1 MB
EGAF50000255519 bam 672.9 MB
EGAF50000255520 bai 3.4 MB
EGAF50000255521 bam 452.2 MB
EGAF50000255522 bai 3.3 MB
EGAF50000255523 bam 627.2 MB
EGAF50000255524 bai 3.0 MB
EGAF50000255525 bam 651.3 MB
EGAF50000255526 bai 4.3 MB
EGAF50000255527 bam 486.4 MB
EGAF50000255528 bai 2.6 MB
EGAF50000255529 bam 765.1 MB
EGAF50000255530 bai 2.9 MB
EGAF50000255531 bam 642.7 MB
EGAF50000255532 bai 3.7 MB
EGAF50000255533 bam 417.0 MB
EGAF50000255534 bai 2.5 MB
EGAF50000255535 bai 3.4 MB
EGAF50000255536 bam 911.1 MB
EGAF50000255537 bam 607.4 MB
EGAF50000255538 bai 2.6 MB
EGAF50000255539 bam 861.8 MB
EGAF50000255540 bai 3.7 MB
EGAF50000255541 bam 464.9 MB
EGAF50000255542 bai 2.9 MB
EGAF50000255543 bam 756.0 MB
EGAF50000255544 bai 4.1 MB
EGAF50000255545 bam 303.8 MB
EGAF50000255546 bai 5.0 MB
EGAF50000255547 bam 132.7 MB
EGAF50000255548 bai 2.6 MB
EGAF50000255549 bam 924.3 MB
EGAF50000255550 bai 2.7 MB
EGAF50000255551 bam 709.3 MB
EGAF50000255552 bai 3.5 MB
EGAF50000255553 bam 945.0 MB
EGAF50000255554 bai 4.9 MB
EGAF50000255555 bam 311.1 MB
EGAF50000255556 bai 2.4 MB
EGAF50000255557 bai 4.5 MB
EGAF50000255558 bam 911.0 MB
EGAF50000255559 bam 229.4 MB
EGAF50000255560 bai 3.1 MB
EGAF50000255561 bam 561.1 MB
EGAF50000255562 bai 3.4 MB
EGAF50000255563 bam 487.0 MB
EGAF50000255564 bai 5.3 MB
EGAF50000255565 bam 124.3 MB
EGAF50000255566 bai 3.0 MB
EGAF50000255567 bam 614.8 MB
EGAF50000255568 bai 3.7 MB
EGAF50000255569 bam 616.5 MB
EGAF50000255570 bai 5.2 MB
EGAF50000255571 bam 107.6 MB
EGAF50000255572 bai 3.4 MB
EGAF50000255573 bam 543.9 MB
EGAF50000255574 bai 4.5 MB
EGAF50000255575 bam 305.2 MB
EGAF50000255576 bai 3.4 MB
EGAF50000255577 bam 667.7 MB
EGAF50000255578 bai 4.0 MB
EGAF50000255579 bam 388.5 MB
EGAF50000255580 bai 4.2 MB
EGAF50000255581 bam 24.5 MB
EGAF50000255582 bai 5.4 MB
EGAF50000255583 bam 56.9 MB
EGAF50000255584 bai 3.9 MB
EGAF50000255585 bam 414.2 MB
EGAF50000255586 bai 3.1 MB
EGAF50000255587 bam 707.6 MB
EGAF50000255588 bai 3.6 MB
EGAF50000255589 bam 415.6 MB
EGAF50000255590 bai 2.6 MB
EGAF50000255591 bam 1.2 GB
EGAF50000255592 bai 4.1 MB
EGAF50000255593 bam 430.3 MB
EGAF50000255594 bai 3.8 MB
EGAF50000255595 bam 12.2 MB
EGAF50000255596 bai 2.5 MB
EGAF50000255597 bam 857.6 MB
EGAF50000255598 bai 2.7 MB
EGAF50000255599 bam 712.7 MB
EGAF50000255600 bai 2.8 MB
EGAF50000255601 bam 647.8 MB
EGAF50000255602 bai 3.6 MB
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EGAF50000255605 bam 488.0 MB
EGAF50000255606 bai 3.3 MB
EGAF50000255607 bam 545.7 MB
EGAF50000255608 bai 2.5 MB
EGAF50000255609 bam 853.3 MB
EGAF50000255610 bai 3.8 MB
EGAF50000255611 bam 387.6 MB
EGAF50000255612 bai 3.9 MB
EGAF50000255613 bam 426.2 MB
EGAF50000255614 bai 5.3 MB
EGAF50000255615 bam 119.9 MB
EGAF50000255616 bai 4.5 MB
EGAF50000255617 bam 232.1 MB
EGAF50000255618 bai 2.9 MB
EGAF50000255619 bam 644.7 MB
EGAF50000255620 bai 5.2 MB
EGAF50000255621 bam 80.3 MB
EGAF50000255622 bai 5.2 MB
EGAF50000255623 bam 70.0 MB
EGAF50000255624 bai 4.7 MB
EGAF50000255625 bam 189.8 MB
EGAF50000255626 bai 4.3 MB
EGAF50000255627 bam 440.3 MB
EGAF50000255628 bai 3.2 MB
EGAF50000255629 bam 560.2 MB
EGAF50000255630 bai 3.0 MB
EGAF50000255631 bam 726.4 MB
EGAF50000255632 bai 4.2 MB
EGAF50000255633 bam 14.2 MB
EGAF50000255634 bai 2.7 MB
EGAF50000255635 bam 678.9 MB
EGAF50000255636 bai 3.2 MB
EGAF50000255637 bam 826.5 MB
EGAF50000255638 bai 3.2 MB
EGAF50000255639 bam 521.1 MB
EGAF50000255640 bai 5.2 MB
EGAF50000255641 bam 143.1 MB
EGAF50000255642 bai 2.3 MB
EGAF50000255643 bam 1.5 GB
EGAF50000255644 bai 3.2 MB
EGAF50000255645 bam 601.8 MB
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EGAF50000255647 bam 101.6 MB
EGAF50000255648 bai 4.7 MB
EGAF50000255649 bam 275.3 MB
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EGAF50000255651 bam 550.5 MB
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EGAF50000255653 bam 754.0 MB
EGAF50000255654 bai 3.7 MB
EGAF50000255655 bam 564.0 MB
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EGAF50000255657 bam 563.9 MB
EGAF50000255658 bai 2.4 MB
EGAF50000255659 bam 1.0 GB
EGAF50000255660 bai 4.0 MB
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EGAF50000255662 bai 2.4 MB
EGAF50000255663 bam 2.8 GB
EGAF50000255664 bai 3.3 MB
EGAF50000255665 bam 546.5 MB
EGAF50000255666 bai 3.2 MB
EGAF50000255667 bam 606.0 MB
EGAF50000255668 bai 3.8 MB
EGAF50000255669 bam 450.7 MB
EGAF50000255670 bai 4.5 MB
EGAF50000255671 bam 305.9 MB
EGAF50000255672 bai 3.5 MB
EGAF50000255673 bam 488.5 MB
EGAF50000255674 bai 3.2 MB
EGAF50000255675 bam 42.3 MB
EGAF50000255676 bai 2.9 MB
EGAF50000255677 bam 705.4 MB
EGAF50000255678 bai 4.5 MB
EGAF50000255679 bam 336.0 MB
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EGAF50000255682 bai 3.4 MB
EGAF50000255683 bam 528.7 MB
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EGAF50000255685 bam 493.9 MB
EGAF50000255686 bai 4.2 MB
EGAF50000255687 bam 401.2 MB
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EGAF50000255689 bam 502.3 MB
EGAF50000255690 bai 4.6 MB
EGAF50000255691 bam 340.2 MB
EGAF50000255692 bai 4.5 MB
EGAF50000255693 bam 318.4 MB
EGAF50000255694 bai 3.5 MB
EGAF50000255695 bam 699.1 MB
EGAF50000255696 bai 3.6 MB
EGAF50000255697 bam 433.0 MB
EGAF50000255698 bai 5.2 MB
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EGAF50000255705 bam 217.5 MB
EGAF50000255706 bai 4.7 MB
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EGAF50000255709 bam 251.9 MB
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EGAF50000255711 bam 78.4 MB
EGAF50000255712 bai 4.6 MB
EGAF50000255713 bam 221.4 MB
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EGAF50000255716 bai 4.1 MB
EGAF50000255717 bam 369.5 MB
EGAF50000255718 bai 2.7 MB
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EGAF50000255720 bai 3.2 MB
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EGAF50000255722 bai 3.1 MB
EGAF50000255723 bam 706.6 MB
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EGAF50000255727 bam 557.9 MB
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EGAF50000255730 bai 3.1 MB
EGAF50000255731 bam 535.1 MB
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EGAF50000255735 bam 634.7 MB
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EGAF50000255737 bam 732.0 MB
EGAF50000255738 bai 2.7 MB
EGAF50000255739 bam 886.7 MB
EGAF50000255740 bai 5.3 MB
EGAF50000255741 bam 37.0 MB
EGAF50000255742 bai 2.7 MB
EGAF50000255743 bam 699.8 MB
EGAF50000255744 bai 2.3 MB
EGAF50000255745 bam 1.8 GB
EGAF50000255746 bai 3.7 MB
EGAF50000255747 bam 399.5 MB
EGAF50000255748 bai 3.1 MB
EGAF50000255749 bam 736.6 MB
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EGAF50000255752 bai 3.2 MB
EGAF50000255753 bam 555.1 MB
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EGAF50000255755 bam 796.4 MB
EGAF50000255756 bai 3.5 MB
EGAF50000255757 bam 542.6 MB
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EGAF50000255759 bam 543.2 MB
EGAF50000255760 bai 4.8 MB
EGAF50000255761 bam 196.2 MB
EGAF50000255762 bai 5.3 MB
EGAF50000255763 bam 79.8 MB
EGAF50000255764 bai 5.1 MB
EGAF50000255765 bam 98.8 MB
EGAF50000255766 bai 3.6 MB
EGAF50000255767 bam 445.3 MB
EGAF50000255768 bai 3.1 MB
EGAF50000255769 bam 707.7 MB
EGAF50000255770 bai 5.0 MB
EGAF50000255771 bam 42.5 MB
EGAF50000255772 bai 2.6 MB
EGAF50000255773 bam 795.1 MB
EGAF50000255774 bai 3.3 MB
EGAF50000255775 bam 530.2 MB
EGAF50000255776 bai 4.8 MB
EGAF50000255777 bam 219.8 MB
EGAF50000255778 bai 3.7 MB
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698 Files (208.2 GB)