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Targeted panel somatic variant sequencing dataset for "Molecular counting enables accurate and precise quantification of methylated ctDNA"

Targeted panel somatic variant sequencing dataset for "Molecular counting enables accurate and precise quantification of methylated ctDNA." This dataset was created by running 60 cfDNA samples from patients with metastatic cancer to the lung through a research-use, tumor-naive, targeted-panel assay for measuring somatic mutations across a panel of 80 genes. All samples were sequenced on Illumina NextSeq 2000 with 150x2 paired end sequencing; files are in fastq.gz format. For the original study, the variant allele fractions of these somatic mutations were compared with the Tumor Methylation Scores calculated from Northstar Response in the same samples.

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000734 Epigenetics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000256701 fastq.gz 9.8 GB
EGAF50000256702 fastq.gz 7.2 GB
EGAF50000256703 fastq.gz 7.3 GB
EGAF50000256724 fastq.gz 7.8 GB
EGAF50000256725 fastq.gz 7.6 GB
EGAF50000256726 fastq.gz 8.2 GB
EGAF50000256727 fastq.gz 8.7 GB
EGAF50000256728 fastq.gz 7.1 GB
EGAF50000256729 fastq.gz 11.0 GB
EGAF50000256730 fastq.gz 8.6 GB
EGAF50000256731 fastq.gz 9.0 GB
EGAF50000256820 fastq.gz 9.6 GB
EGAF50000256821 fastq.gz 8.2 GB
EGAF50000256822 fastq.gz 7.8 GB
EGAF50000256823 fastq.gz 6.5 GB
EGAF50000256824 fastq.gz 16.3 GB
EGAF50000256825 fastq.gz 7.6 GB
EGAF50000256826 fastq.gz 8.2 GB
EGAF50000256827 fastq.gz 9.8 GB
EGAF50000256828 fastq.gz 8.4 GB
EGAF50000256829 fastq.gz 8.6 GB
EGAF50000256830 fastq.gz 8.0 GB
EGAF50000256831 fastq.gz 7.3 GB
EGAF50000256832 fastq.gz 7.9 GB
EGAF50000256833 fastq.gz 7.7 GB
EGAF50000256913 fastq.gz 10.2 GB
EGAF50000256924 fastq.gz 10.7 GB
EGAF50000256929 fastq.gz 7.9 GB
EGAF50000256930 fastq.gz 5.9 GB
EGAF50000256931 fastq.gz 9.9 GB
EGAF50000256932 fastq.gz 8.0 GB
EGAF50000256934 fastq.gz 9.2 GB
EGAF50000256935 fastq.gz 6.2 GB
EGAF50000256936 fastq.gz 8.2 GB
EGAF50000256937 fastq.gz 7.7 GB
EGAF50000256938 fastq.gz 10.5 GB
EGAF50000256940 fastq.gz 14.7 GB
EGAF50000256944 fastq.gz 13.6 GB
EGAF50000256945 fastq.gz 13.2 GB
EGAF50000256947 fastq.gz 18.6 GB
EGAF50000256948 fastq.gz 10.1 GB
EGAF50000256949 fastq.gz 10.5 GB
EGAF50000256950 fastq.gz 7.8 GB
EGAF50000256951 fastq.gz 7.6 GB
EGAF50000256952 fastq.gz 10.2 GB
EGAF50000256953 fastq.gz 9.9 GB
EGAF50000256954 fastq.gz 10.4 GB
EGAF50000256955 fastq.gz 7.2 GB
EGAF50000256956 fastq.gz 7.5 GB
EGAF50000256968 fastq.gz 7.0 GB
EGAF50000257031 fastq.gz 8.2 GB
EGAF50000257032 fastq.gz 8.2 GB
EGAF50000257033 fastq.gz 7.2 GB
EGAF50000257034 fastq.gz 9.4 GB
EGAF50000257035 fastq.gz 8.5 GB
EGAF50000257036 fastq.gz 10.8 GB
EGAF50000257037 fastq.gz 9.4 GB
EGAF50000257038 fastq.gz 10.5 GB
EGAF50000257039 fastq.gz 15.1 GB
EGAF50000257044 fastq.gz 10.4 GB
EGAF50000257045 fastq.gz 8.0 GB
EGAF50000257046 fastq.gz 6.9 GB
EGAF50000257047 fastq.gz 10.1 GB
EGAF50000257048 fastq.gz 7.5 GB
EGAF50000257049 fastq.gz 8.3 GB
EGAF50000257050 fastq.gz 10.1 GB
EGAF50000257051 fastq.gz 14.3 GB
EGAF50000257052 fastq.gz 10.4 GB
EGAF50000257053 fastq.gz 8.4 GB
EGAF50000257054 fastq.gz 7.3 GB
EGAF50000257055 fastq.gz 10.2 GB
EGAF50000257056 fastq.gz 7.4 GB
EGAF50000257057 fastq.gz 8.1 GB
EGAF50000257058 fastq.gz 9.7 GB
EGAF50000257059 fastq.gz 9.3 GB
EGAF50000257060 fastq.gz 8.5 GB
EGAF50000257061 fastq.gz 9.1 GB
EGAF50000257062 fastq.gz 8.9 GB
EGAF50000257063 fastq.gz 8.7 GB
EGAF50000257064 fastq.gz 10.9 GB
EGAF50000257065 fastq.gz 9.7 GB
EGAF50000257066 fastq.gz 9.9 GB
EGAF50000257306 fastq.gz 7.4 GB
EGAF50000257308 fastq.gz 14.3 GB
EGAF50000257311 fastq.gz 9.6 GB
EGAF50000257318 fastq.gz 14.2 GB
EGAF50000257322 fastq.gz 6.8 GB
EGAF50000257324 fastq.gz 12.8 GB
EGAF50000257325 fastq.gz 10.7 GB
EGAF50000257328 fastq.gz 13.0 GB
EGAF50000257329 fastq.gz 13.8 GB
EGAF50000257330 fastq.gz 7.1 GB
EGAF50000257332 fastq.gz 14.7 GB
EGAF50000257334 fastq.gz 11.1 GB
EGAF50000257336 fastq.gz 13.4 GB
EGAF50000257339 fastq.gz 15.2 GB
EGAF50000257344 fastq.gz 18.0 GB
EGAF50000257353 fastq.gz 9.8 GB
EGAF50000257355 fastq.gz 7.3 GB
EGAF50000257356 fastq.gz 6.7 GB
EGAF50000257360 fastq.gz 11.3 GB
EGAF50000257361 fastq.gz 11.1 GB
EGAF50000257362 fastq.gz 14.7 GB
EGAF50000257364 fastq.gz 8.3 GB
EGAF50000257365 fastq.gz 7.8 GB
EGAF50000257366 fastq.gz 7.9 GB
EGAF50000257367 fastq.gz 7.1 GB
EGAF50000257370 fastq.gz 9.0 GB
EGAF50000257371 fastq.gz 7.0 GB
EGAF50000257372 fastq.gz 8.2 GB
EGAF50000257373 fastq.gz 8.0 GB
EGAF50000257374 fastq.gz 7.1 GB
EGAF50000257375 fastq.gz 8.5 GB
EGAF50000257376 fastq.gz 10.3 GB
EGAF50000257377 fastq.gz 9.2 GB
EGAF50000257378 fastq.gz 8.5 GB
EGAF50000257379 fastq.gz 17.1 GB
EGAF50000257389 fastq.gz 9.6 GB
EGAF50000257390 fastq.gz 10.6 GB
EGAF50000257397 fastq.gz 6.7 GB
120 Files (1.2 TB)