MIBC NAC2020 cohort RNA sequencing
The dataset contains RNA sequencing data from N=48 transurethral resections of bladder tumours (TURBTs) from N=48 patients with muscle-invasive bladder cancer who were treated with neoadjuvant chemotherapy followed by radical cystectomy. All TURBTs originate from formalin-fixed paraffin embedded tissue. We used the Illumina TruSeq RNA exome kit, previously known as the TruSeq RNA Access Library Prep Kit. This kit converts total RNA into template molecules of known strand origin, followed by sequence-specific capture of coding RNA. All samples were run in an Illumina NovaSeq6000 instrument. Paired FASTQ files from all 48 patients are provided.
- 16/12/2024
- 48 samples
- DAC: EGAC00000000011
- Technology: Illumina NovaSeq 6000
BC Cancer, part of the Provincial Health Services Authority - Data Access Policy
Access to this data is controlled. There are a number of steps that a researcher must take to obtain access to this data, including execution of a Data Access Agreement between the institutions. The process is overseen by the Technology Development Office; please contact our general email address TDOadmin@phsa.ca. Please only click the "request data" button on the EGA website after a Data Access Agreement is fully executed.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000741 | Transcriptome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF50000258856 | fastq.gz | 2.1 GB | ||
| EGAF50000258857 | fastq.gz | 2.3 GB | ||
| EGAF50000258858 | fastq.gz | 2.3 GB | ||
| EGAF50000258859 | fastq.gz | 2.4 GB | ||
| EGAF50000258860 | fastq.gz | 1.9 GB | ||
| EGAF50000258861 | fastq.gz | 1.8 GB | ||
| EGAF50000258862 | fastq.gz | 1.9 GB | ||
| EGAF50000258863 | fastq.gz | 2.1 GB | ||
| EGAF50000258864 | fastq.gz | 2.1 GB | ||
| EGAF50000258865 | fastq.gz | 2.2 GB | ||
| EGAF50000258866 | fastq.gz | 2.0 GB | ||
| EGAF50000258867 | fastq.gz | 2.1 GB | ||
| EGAF50000258868 | fastq.gz | 2.0 GB | ||
| EGAF50000258869 | fastq.gz | 2.2 GB | ||
| EGAF50000258870 | fastq.gz | 2.0 GB | ||
| EGAF50000258871 | fastq.gz | 2.1 GB | ||
| EGAF50000258872 | fastq.gz | 1.9 GB | ||
| EGAF50000258873 | fastq.gz | 2.0 GB | ||
| EGAF50000258874 | fastq.gz | 2.0 GB | ||
| EGAF50000258875 | fastq.gz | 2.1 GB | ||
| EGAF50000258876 | fastq.gz | 2.1 GB | ||
| EGAF50000258877 | fastq.gz | 2.2 GB | ||
| EGAF50000258878 | fastq.gz | 1.9 GB | ||
| EGAF50000258879 | fastq.gz | 2.1 GB | ||
| EGAF50000258880 | fastq.gz | 2.0 GB | ||
| EGAF50000258881 | fastq.gz | 2.2 GB | ||
| EGAF50000258882 | fastq.gz | 2.0 GB | ||
| EGAF50000258883 | fastq.gz | 2.2 GB | ||
| EGAF50000258884 | fastq.gz | 2.1 GB | ||
| EGAF50000258885 | fastq.gz | 2.1 GB | ||
| EGAF50000258886 | fastq.gz | 2.2 GB | ||
| EGAF50000258887 | fastq.gz | 2.1 GB | ||
| EGAF50000258888 | fastq.gz | 2.2 GB | ||
| EGAF50000258889 | fastq.gz | 2.0 GB | ||
| EGAF50000258890 | fastq.gz | 2.1 GB | ||
| EGAF50000258891 | fastq.gz | 2.1 GB | ||
| EGAF50000258892 | fastq.gz | 2.3 GB | ||
| EGAF50000258893 | fastq.gz | 2.1 GB | ||
| EGAF50000258894 | fastq.gz | 2.2 GB | ||
| EGAF50000258895 | fastq.gz | 2.0 GB | ||
| EGAF50000258896 | fastq.gz | 2.2 GB | ||
| EGAF50000258897 | fastq.gz | 2.1 GB | ||
| EGAF50000258898 | fastq.gz | 2.2 GB | ||
| EGAF50000258899 | fastq.gz | 2.1 GB | ||
| EGAF50000258900 | fastq.gz | 2.0 GB | ||
| EGAF50000258901 | fastq.gz | 2.0 GB | ||
| EGAF50000258902 | fastq.gz | 2.1 GB | ||
| EGAF50000258903 | fastq.gz | 2.0 GB | ||
| EGAF50000258904 | fastq.gz | 2.1 GB | ||
| EGAF50000258905 | fastq.gz | 2.1 GB | ||
| EGAF50000258906 | fastq.gz | 2.2 GB | ||
| EGAF50000258907 | fastq.gz | 2.2 GB | ||
| EGAF50000258908 | fastq.gz | 2.1 GB | ||
| EGAF50000258909 | fastq.gz | 2.3 GB | ||
| EGAF50000258910 | fastq.gz | 2.0 GB | ||
| EGAF50000258911 | fastq.gz | 2.3 GB | ||
| EGAF50000258912 | fastq.gz | 2.0 GB | ||
| EGAF50000258913 | fastq.gz | 2.0 GB | ||
| EGAF50000258914 | fastq.gz | 1.9 GB | ||
| EGAF50000258915 | fastq.gz | 2.1 GB | ||
| EGAF50000258916 | fastq.gz | 2.2 GB | ||
| EGAF50000258917 | fastq.gz | 2.1 GB | ||
| EGAF50000258918 | fastq.gz | 2.3 GB | ||
| EGAF50000258919 | fastq.gz | 15.4 GB | ||
| EGAF50000258920 | fastq.gz | 1.9 GB | ||
| EGAF50000258921 | fastq.gz | 2.1 GB | ||
| EGAF50000258922 | fastq.gz | 2.2 GB | ||
| EGAF50000258923 | fastq.gz | 5.3 GB | ||
| EGAF50000258924 | fastq.gz | 5.7 GB | ||
| EGAF50000258925 | fastq.gz | 3.2 GB | ||
| EGAF50000258926 | fastq.gz | 3.4 GB | ||
| EGAF50000258927 | fastq.gz | 2.2 GB | ||
| EGAF50000258928 | fastq.gz | 2.1 GB | ||
| EGAF50000258929 | fastq.gz | 2.0 GB | ||
| EGAF50000258930 | fastq.gz | 1.9 GB | ||
| EGAF50000258931 | fastq.gz | 2.1 GB | ||
| EGAF50000258932 | fastq.gz | 2.2 GB | ||
| EGAF50000258933 | fastq.gz | 5.9 GB | ||
| EGAF50000258934 | fastq.gz | 5.6 GB | ||
| EGAF50000258935 | fastq.gz | 2.0 GB | ||
| EGAF50000258936 | fastq.gz | 2.1 GB | ||
| EGAF50000258937 | fastq.gz | 2.1 GB | ||
| EGAF50000258938 | fastq.gz | 2.2 GB | ||
| EGAF50000258939 | fastq.gz | 1.9 GB | ||
| EGAF50000258940 | fastq.gz | 2.0 GB | ||
| EGAF50000258941 | fastq.gz | 2.2 GB | ||
| EGAF50000258942 | fastq.gz | 2.3 GB | ||
| EGAF50000258943 | fastq.gz | 1.9 GB | ||
| EGAF50000258944 | fastq.gz | 2.0 GB | ||
| EGAF50000258945 | fastq.gz | 2.3 GB | ||
| EGAF50000258946 | fastq.gz | 2.3 GB | ||
| EGAF50000258947 | fastq.gz | 2.1 GB | ||
| EGAF50000258948 | fastq.gz | 2.4 GB | ||
| EGAF50000258949 | fastq.gz | 1.9 GB | ||
| EGAF50000258950 | fastq.gz | 2.1 GB | ||
| EGAF50000258951 | fastq.gz | 16.4 GB | ||
| 96 Files (245.8 GB) | ||||