High-grade serous ovarian carcinoma tumour exome sequencing variants
Tumour variants (in VCF format) from exome sequencing (using Agilent SureSelect and TWIST library preparation systems followed by sequencing on Illumina HiSeq and NovaSeq platforms) of 108 high-grade serous ovarian tumour samples. Germline variants from EGAD00001006030 for these individuals were used to call somatic and tumour-only variants separately, creating two VCF files per sample (except for one sample without paired germline data- somatic variant file only provided). The dataset comprises 215 VCF variant files.
- 30/12/2024
- 215 samples
- DAC: EGAC00001003451
- Technologies: Illumina HiSeq 2500, Illumina NovaSeq 6000
All requests to access data will be assessed by the Peter MacCallum Cancer Centre Data Governance Office. Emails may be directed to dgo@petermac.org.
Please email dgo@petermac.org to obtain the detailed policy regarding data access.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000770 | Cancer Genomics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Quality Report |
Located in
i
|
|---|---|---|---|---|
| EGAF50000275278 | vcf | 36.5 MB | Report |
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| EGAF50000275282 | vcf | 44.4 MB | Report |
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| EGAF50000275283 | vcf | 43.8 MB | Report |
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| EGAF50000275284 | vcf | 45.3 MB | Report |
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| EGAF50000275285 | vcf | 43.4 MB | Report |
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| EGAF50000275286 | vcf | 45.4 MB | Report |
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| EGAF50000275287 | vcf | 45.6 MB | Report |
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| EGAF50000275288 | vcf | 44.3 MB | Report |
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| EGAF50000275289 | vcf | 43.0 MB | Report |
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| EGAF50000275290 | vcf | 44.0 MB | Report |
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| EGAF50000275291 | vcf | 42.9 MB | Report |
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| EGAF50000275292 | vcf | 44.0 MB | Report |
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| EGAF50000275293 | vcf | 43.3 MB | Report |
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| EGAF50000275294 | vcf | 44.2 MB | Report |
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| EGAF50000275295 | vcf | 43.2 MB | Report |
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| EGAF50000275296 | vcf | 43.2 MB | Report |
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| EGAF50000275297 | vcf | 47.6 MB | Report |
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| EGAF50000275298 | vcf | 44.4 MB | Report |
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| EGAF50000275299 | vcf | 50.3 MB | Report |
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| EGAF50000275300 | vcf | 43.8 MB | Report |
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| EGAF50000275301 | vcf | 47.0 MB | Report |
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| EGAF50000275302 | vcf | 43.4 MB | Report |
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| EGAF50000275303 | vcf | 44.0 MB | Report |
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| EGAF50000275304 | vcf | 51.3 MB | Report |
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| EGAF50000275305 | vcf | 42.6 MB | Report |
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| EGAF50000275306 | vcf | 44.1 MB | Report |
|
| EGAF50000275307 | vcf | 45.4 MB | Report |
|
| EGAF50000275308 | vcf | 39.6 MB | Report |
|
| EGAF50000275309 | vcf | 44.0 MB | Report |
|
| EGAF50000275310 | vcf | 39.5 MB | Report |
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| EGAF50000275311 | vcf | 48.7 MB | Report |
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| EGAF50000275312 | vcf | 43.8 MB | Report |
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| EGAF50000275313 | vcf | 44.3 MB | Report |
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| EGAF50000275314 | vcf | 43.0 MB | Report |
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| EGAF50000275315 | vcf | 49.2 MB | Report |
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| EGAF50000275316 | vcf | 49.1 MB | Report |
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| EGAF50000275317 | vcf | 55.1 MB | Report |
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| EGAF50000275318 | vcf | 49.4 MB | Report |
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| EGAF50000275319 | vcf | 45.1 MB | Report |
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| EGAF50000275320 | vcf | 56.4 MB | Report |
|
| EGAF50000275321 | vcf | 46.9 MB | Report |
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| EGAF50000275322 | vcf | 40.4 MB | Report |
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| EGAF50000275323 | vcf | 38.7 MB | Report |
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| EGAF50000275324 | vcf | 44.6 MB | Report |
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| EGAF50000275325 | vcf | 38.3 MB | Report |
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| EGAF50000275326 | vcf | 50.9 MB | Report |
|
| EGAF50000275327 | vcf | 40.7 MB | Report |
|
| EGAF50000275328 | vcf | 44.1 MB | Report |
|
| EGAF50000275329 | vcf | 41.4 MB | Report |
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| EGAF50000275330 | vcf | 43.1 MB | Report |
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| EGAF50000275331 | vcf | 40.3 MB | Report |
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| EGAF50000275332 | vcf | 44.8 MB | Report |
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| EGAF50000275333 | vcf | 45.5 MB | Report |
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| EGAF50000275334 | vcf | 45.4 MB | Report |
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| EGAF50000275335 | vcf | 50.0 MB | Report |
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| EGAF50000275336 | vcf | 45.6 MB | Report |
|
| EGAF50000275337 | vcf | 49.5 MB | Report |
|
| EGAF50000275338 | vcf | 96.6 MB | Report |
|
| EGAF50000275339 | vcf | 68.2 MB | Report |
|
| EGAF50000275340 | vcf | 43.8 MB | Report |
|
| EGAF50000275341 | vcf | 55.4 MB | Report |
|
| EGAF50000275342 | vcf | 47.8 MB | Report |
|
| EGAF50000275343 | vcf | 83.2 MB | Report |
|
| EGAF50000275344 | vcf | 87.5 MB | Report |
|
| EGAF50000275345 | vcf | 79.0 MB | Report |
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| EGAF50000275346 | vcf | 48.4 MB | Report |
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| EGAF50000275347 | vcf | 72.8 MB | Report |
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| EGAF50000275348 | vcf | 40.2 MB | Report |
|
| EGAF50000275349 | vcf | 61.9 MB | Report |
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| EGAF50000275350 | vcf | 58.8 MB | Report |
|
| EGAF50000275351 | vcf | 124.4 MB | Report |
|
| EGAF50000275352 | vcf | 53.7 MB | Report |
|
| EGAF50000275353 | vcf | 98.4 MB | Report |
|
| EGAF50000275354 | vcf | 61.7 MB | Report |
|
| EGAF50000275355 | vcf | 74.1 MB | Report |
|
| EGAF50000275356 | vcf | 153.4 MB | Report |
|
| EGAF50000275357 | vcf | 51.2 MB | Report |
|
| EGAF50000275358 | vcf | 41.0 MB | Report |
|
| EGAF50000275359 | vcf | 58.7 MB | Report |
|
| EGAF50000275360 | vcf | 44.2 MB | Report |
|
| EGAF50000275361 | vcf | 59.7 MB | Report |
|
| EGAF50000275362 | vcf | 31.1 MB | Report |
|
| EGAF50000275363 | vcf | 75.1 MB | Report |
|
| EGAF50000275364 | vcf | 111.0 MB | Report |
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| EGAF50000275365 | vcf | 104.2 MB | Report |
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| EGAF50000275366 | vcf | 99.2 MB | Report |
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| EGAF50000275367 | vcf | 165.0 MB | Report |
|
| EGAF50000275368 | vcf | 74.5 MB | Report |
|
| EGAF50000275369 | vcf | 54.2 MB | Report |
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| EGAF50000275370 | vcf | 181.3 MB | Report |
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| EGAF50000275371 | vcf | 20.4 MB | Report |
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| EGAF50000275372 | vcf | 112.8 MB | Report |
|
| EGAF50000275373 | vcf | 106.1 MB | Report |
|
| EGAF50000275374 | vcf | 144.9 MB | Report |
|
| EGAF50000275375 | vcf | 74.3 MB | Report |
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| EGAF50000275376 | vcf | 56.1 MB | Report |
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| EGAF50000275377 | vcf | 84.3 MB | Report |
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| EGAF50000275378 | vcf | 218.7 MB | Report |
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| EGAF50000275379 | vcf | 146.3 MB | Report |
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| EGAF50000275380 | vcf | 89.9 MB | Report |
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| EGAF50000275381 | vcf | 71.8 MB | Report |
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| EGAF50000275382 | vcf | 219.0 MB | Report |
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| EGAF50000275383 | vcf | 86.2 MB | Report |
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| EGAF50000275384 | vcf | 69.2 MB | Report |
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| EGAF50000275385 | vcf | 106.6 MB | Report |
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| EGAF50000275386 | vcf | 155.8 MB | Report |
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| EGAF50000275387 | vcf | 16.0 MB | Report |
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| EGAF50000275388 | vcf | 86.1 MB | Report |
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| EGAF50000275389 | vcf | 64.6 MB | Report |
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| EGAF50000275390 | vcf | 114.0 MB | Report |
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| EGAF50000275391 | vcf | 144.0 MB | Report |
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| EGAF50000275392 | vcf | 67.0 MB | Report |
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| EGAF50000275393 | vcf | 104.7 MB | Report |
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| EGAF50000275394 | vcf | 56.0 MB | Report |
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| EGAF50000275395 | vcf | 60.6 MB | Report |
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| EGAF50000275396 | vcf | 70.1 MB | Report |
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| EGAF50000275397 | vcf | 42.9 MB | Report |
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| EGAF50000275398 | vcf | 57.2 MB | Report |
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| EGAF50000275399 | vcf | 88.4 MB | Report |
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| EGAF50000275400 | vcf | 56.8 MB | Report |
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| EGAF50000275401 | vcf | 57.0 MB | Report |
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| EGAF50000275402 | vcf | 57.7 MB | Report |
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| EGAF50000275403 | vcf | 54.4 MB | Report |
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| EGAF50000275404 | vcf | 61.7 MB | Report |
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| EGAF50000275405 | vcf | 58.4 MB | Report |
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| EGAF50000275406 | vcf | 57.1 MB | Report |
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| EGAF50000275407 | vcf | 58.2 MB | Report |
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| EGAF50000275408 | vcf | 58.0 MB | Report |
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| EGAF50000275409 | vcf | 62.5 MB | Report |
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| EGAF50000275410 | vcf | 55.7 MB | Report |
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| EGAF50000275411 | vcf | 57.7 MB | Report |
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| EGAF50000275412 | vcf | 57.8 MB | Report |
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| EGAF50000275413 | vcf | 58.6 MB | Report |
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| EGAF50000275414 | vcf | 60.7 MB | Report |
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| EGAF50000275415 | vcf | 56.4 MB | Report |
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| EGAF50000275416 | vcf | 61.1 MB | Report |
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| EGAF50000275417 | vcf | 57.9 MB | Report |
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| EGAF50000275418 | vcf | 56.3 MB | Report |
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| EGAF50000275419 | vcf | 57.1 MB | Report |
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| EGAF50000275420 | vcf | 57.0 MB | Report |
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| EGAF50000275421 | vcf | 56.5 MB | Report |
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| EGAF50000275422 | vcf | 67.4 MB | Report |
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| EGAF50000275423 | vcf | 58.0 MB | Report |
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| EGAF50000275424 | vcf | 72.3 MB | Report |
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| EGAF50000275425 | vcf | 55.2 MB | Report |
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| EGAF50000275426 | vcf | 57.6 MB | Report |
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| EGAF50000275427 | vcf | 56.3 MB | Report |
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| EGAF50000275428 | vcf | 68.6 MB | Report |
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| EGAF50000275429 | vcf | 55.8 MB | Report |
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| EGAF50000275430 | vcf | 57.9 MB | Report |
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| EGAF50000275431 | vcf | 61.0 MB | Report |
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| EGAF50000275432 | vcf | 67.8 MB | Report |
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| EGAF50000275433 | vcf | 58.6 MB | Report |
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| EGAF50000275434 | vcf | 57.7 MB | Report |
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| EGAF50000275435 | vcf | 57.1 MB | Report |
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| EGAF50000275436 | vcf | 60.3 MB | Report |
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| EGAF50000275437 | vcf | 57.0 MB | Report |
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| EGAF50000275438 | vcf | 56.8 MB | Report |
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| EGAF50000275439 | vcf | 60.3 MB | Report |
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| EGAF50000275440 | vcf | 58.6 MB | Report |
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| EGAF50000275441 | vcf | 62.1 MB | Report |
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| EGAF50000275442 | vcf | 54.5 MB | Report |
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| EGAF50000275443 | vcf | 56.4 MB | Report |
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| EGAF50000275444 | vcf | 65.4 MB | Report |
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| EGAF50000275445 | vcf | 250.3 MB | Report |
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| EGAF50000275446 | vcf | 383.1 MB | Report |
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| EGAF50000275447 | vcf | 83.2 MB | Report |
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| EGAF50000275448 | vcf | 146.1 MB | Report |
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| EGAF50000275449 | vcf | 79.7 MB | Report |
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| EGAF50000275450 | vcf | 62.2 MB | Report |
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| EGAF50000275451 | vcf | 303.3 MB | Report |
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| EGAF50000275452 | vcf | 225.1 MB | Report |
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| EGAF50000275453 | vcf | 115.8 MB | Report |
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| EGAF50000275454 | vcf | 82.2 MB | Report |
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| EGAF50000275455 | vcf | 119.2 MB | Report |
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| EGAF50000275456 | vcf | 100.1 MB | Report |
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| EGAF50000275457 | vcf | 308.1 MB | Report |
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| EGAF50000275458 | vcf | 291.1 MB | Report |
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| EGAF50000275459 | vcf | 169.9 MB | Report |
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| EGAF50000275460 | vcf | 264.4 MB | Report |
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| EGAF50000275461 | vcf | 149.0 MB | Report |
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| EGAF50000275462 | vcf | 72.3 MB | Report |
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| EGAF50000275463 | vcf | 318.3 MB | Report |
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| EGAF50000275464 | vcf | 196.0 MB | Report |
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| EGAF50000275465 | vcf | 144.3 MB | Report |
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| EGAF50000275466 | vcf | 105.6 MB | Report |
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| EGAF50000275467 | vcf | 222.8 MB | Report |
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| EGAF50000275468 | vcf | 212.9 MB | Report |
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| EGAF50000275469 | vcf | 133.2 MB | Report |
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| EGAF50000275470 | vcf | 71.3 MB | Report |
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| EGAF50000275471 | vcf | 130.4 MB | Report |
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| EGAF50000275472 | vcf | 291.8 MB | Report |
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| EGAF50000275473 | vcf | 182.3 MB | Report |
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| EGAF50000275474 | vcf | 186.8 MB | Report |
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| EGAF50000275475 | vcf | 93.8 MB | Report |
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| EGAF50000275476 | vcf | 275.0 MB | Report |
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| EGAF50000275477 | vcf | 158.8 MB | Report |
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| EGAF50000275478 | vcf | 378.4 MB | Report |
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| EGAF50000275479 | vcf | 171.6 MB | Report |
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| EGAF50000275480 | vcf | 241.0 MB | Report |
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| EGAF50000275481 | vcf | 208.4 MB | Report |
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| EGAF50000275482 | vcf | 214.9 MB | Report |
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| EGAF50000275483 | vcf | 130.5 MB | Report |
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| EGAF50000275484 | vcf | 155.5 MB | Report |
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| EGAF50000275485 | vcf | 62.4 MB | Report |
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| EGAF50000275486 | vcf | 79.7 MB | Report |
|
| EGAF50000275487 | vcf | 353.7 MB | Report |
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| EGAF50000275488 | vcf | 124.1 MB | Report |
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| EGAF50000275489 | vcf | 136.6 MB | Report |
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| EGAF50000275490 | vcf | 161.6 MB | Report |
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| EGAF50000275491 | vcf | 59.9 MB | Report |
|
| EGAF50000275492 | vcf | 398.5 MB | Report |
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| EGAF50000275493 | vcf | 228.3 MB | Report |
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| EGAF50000275494 | vcf | 92.1 MB | Report |
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| EGAF50000275495 | vcf | 358.3 MB | Report |
|
| 215 Files (20.0 GB) | ||||