High-grade serous ovarian carcinoma tumour exome sequencing variants

Tumour variants (in VCF format) from exome sequencing (using Agilent SureSelect and TWIST library preparation systems followed by sequencing on Illumina HiSeq and NovaSeq platforms) of 108 high-grade serous ovarian tumour samples. Germline variants from EGAD00001006030 for these individuals were used to call somatic and tumour-only variants separately, creating two VCF files per sample (except for one sample without paired germline data- somatic variant file only provided). The dataset comprises 215 VCF variant files.

30/12/2024
215 samples
DAC: EGAC00001003451
Technologies: Illumina HiSeq 2500, Illumina NovaSeq 6000

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Metadata

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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID	Study Title	Study Type
EGAS50000000770	Assessment of candidate high-grade serous ovarian carcinoma predisposition genes through integrated germline and tumour sequencing	Cancer Genomics

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ID	File Type	Size	Located in