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D1D2 trial Whole Exome Sequencing (WES)

Surgical treatment of gastric cancer: 15-year follow-up results of the randomised nationwide Dutch D1D2 trial. Molecular characterisation of N=80 resectable gastric adenocarcinomas from D1D2 trial, describing mutations obtained by matched (Tumor-Normal) whole exome sequencing (WES). Samples are annotated for TCGA’s molecular classification (MSI, GS and CIN).

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Data originating from patient samples

The Amsterdam UMC, tumor genome analysis core, allows access to published datasets upon written application and signature of a Data Access Agreement (DAA). In addition, applications to clinical datasets require approval by a Data Access Committee (DAC), who assess whether the proposed work is allowed given patient consent, as well as the scientific purpose. To aid this process we ask you to provide the information below. Requests will be prioritised according to novelty of the research question. Applications with insufficient detail on objectives, justification, and methods/planned analyses are unlikely to be accepted. 1.Reference number for the dataset 2.Full legal name and address of university/institution 3.Name(s) of the Principle Investigator who will use the data: 4.Name(s) and job title(s) of any other investigators who will use the data: 5.Please provide a minimum of one reference to a publication that can be found on PubMed and where the Principle Investigator is an author: 6.How will the data be stored and where will it be stored? 7.What is the proposed study title and what are the objectives and outcomes of the study in which the data will be used 8.Please provide a brief justification or rationale for the proposed study (max 250 words) 9.Please provide a brief description of planned data analyses (max 250 words): 10.Will the results arising from use of the data be used for the creation of products for sale or for any commercial purpose?

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS50000000779 Cancer Genomics

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF50000276408 bam 3.8 GB
EGAF50000276409 bam 16.9 GB
EGAF50000276410 bam 15.6 GB
EGAF50000276411 bam 7.2 GB
EGAF50000276412 bam 16.8 GB
EGAF50000276413 bam 5.9 GB
EGAF50000276414 bam 26.1 GB
EGAF50000276415 bam 13.6 GB
EGAF50000276416 bam 12.1 GB
EGAF50000276417 bam 16.5 GB
EGAF50000276418 bam 5.8 GB
EGAF50000276419 bam 6.1 GB
EGAF50000276420 bam 18.3 GB
EGAF50000276424 bam 20.5 GB
EGAF50000276425 bam 5.3 GB
EGAF50000276426 bam 16.8 GB
EGAF50000276427 bam 5.4 GB
EGAF50000276428 bam 3.0 GB
EGAF50000276429 bam 8.4 GB
EGAF50000276430 bam 4.5 GB
EGAF50000276431 bam 13.8 GB
EGAF50000276432 bam 5.7 GB
EGAF50000276433 bam 4.2 GB
EGAF50000276434 bam 18.3 GB
EGAF50000276435 bam 2.6 GB
EGAF50000276436 bam 9.2 GB
EGAF50000276437 bam 6.9 GB
EGAF50000276438 bam 14.8 GB
EGAF50000276439 bam 5.6 GB
EGAF50000276440 bam 16.2 GB
EGAF50000276441 bam 12.8 GB
EGAF50000276442 bam 5.2 GB
EGAF50000276443 bam 15.3 GB
EGAF50000276444 bam 7.1 GB
EGAF50000276445 bam 4.6 GB
EGAF50000276446 bam 14.5 GB
EGAF50000276450 bam 5.3 GB
EGAF50000276451 bam 7.6 GB
EGAF50000276452 bam 18.1 GB
EGAF50000276453 bam 23.1 GB
EGAF50000276454 bam 4.7 GB
EGAF50000276455 bam 14.5 GB
EGAF50000276456 bam 6.4 GB
EGAF50000276457 bam 20.6 GB
EGAF50000276458 bam 5.6 GB
EGAF50000276459 bam 16.1 GB
EGAF50000276460 bam 6.6 GB
EGAF50000276461 bam 33.0 GB
EGAF50000276462 bam 21.9 GB
EGAF50000276463 bam 4.2 GB
EGAF50000276464 bam 4.7 GB
EGAF50000276465 bam 3.4 GB
EGAF50000276466 bam 15.9 GB
EGAF50000276467 bam 8.4 GB
EGAF50000276468 bam 21.0 GB
EGAF50000276469 bam 6.1 GB
EGAF50000276470 bam 21.6 GB
EGAF50000276471 bam 5.5 GB
EGAF50000276472 bam 34.1 GB
EGAF50000276473 bam 22.6 GB
EGAF50000276474 bam 20.5 GB
EGAF50000276475 bam 17.4 GB
EGAF50000276476 bam 7.3 GB
EGAF50000276477 bam 5.2 GB
EGAF50000276478 bam 12.7 GB
EGAF50000276479 bam 15.9 GB
EGAF50000276480 bam 12.2 GB
EGAF50000276481 bam 4.2 GB
EGAF50000276482 bam 6.9 GB
EGAF50000276483 bam 3.3 GB
EGAF50000276484 bam 25.4 GB
EGAF50000276485 bam 4.6 GB
EGAF50000276486 bam 23.8 GB
EGAF50000276487 bam 5.0 GB
EGAF50000276488 bam 5.8 GB
EGAF50000276489 bam 13.4 GB
EGAF50000276490 bam 6.8 GB
EGAF50000276491 bam 6.9 GB
EGAF50000276492 bam 23.3 GB
EGAF50000276493 bam 5.5 GB
EGAF50000276494 bam 20.4 GB
EGAF50000276495 bam 5.9 GB
EGAF50000276496 bam 15.8 GB
EGAF50000276497 bam 6.4 GB
EGAF50000276498 bam 19.8 GB
EGAF50000276499 bam 5.9 GB
EGAF50000276500 bam 16.3 GB
EGAF50000276501 bam 18.0 GB
EGAF50000276502 bam 6.9 GB
EGAF50000276503 bam 17.0 GB
EGAF50000276504 bam 3.2 GB
EGAF50000276505 bam 5.9 GB
EGAF50000276506 bam 5.4 GB
EGAF50000276507 bam 19.2 GB
EGAF50000276508 bam 4.0 GB
EGAF50000276509 bam 11.4 GB
EGAF50000276510 bam 7.4 GB
EGAF50000276511 bam 20.2 GB
EGAF50000276512 bam 5.8 GB
EGAF50000276513 bam 13.0 GB
EGAF50000276514 bam 8.4 GB
EGAF50000276515 bam 13.7 GB
EGAF50000276516 bam 5.4 GB
EGAF50000276517 bam 21.4 GB
EGAF50000276518 bam 6.6 GB
EGAF50000276519 bam 7.9 GB
EGAF50000276529 bam 17.2 GB
EGAF50000276538 bam 5.0 GB
EGAF50000276541 bam 21.5 GB
EGAF50000276542 bam 22.2 GB
EGAF50000276543 bam 15.7 GB
EGAF50000276544 bam 6.7 GB
EGAF50000276545 bam 4.5 GB
EGAF50000276547 bam 8.7 GB
EGAF50000276551 bam 5.0 GB
EGAF50000276552 bam 4.8 GB
EGAF50000276565 bam 6.6 GB
EGAF50000276566 bam 16.8 GB
EGAF50000276569 bam 18.7 GB
EGAF50000276570 bam 5.4 GB
EGAF50000276574 bam 7.7 GB
EGAF50000276577 bam 19.2 GB
EGAF50000276578 bam 3.9 GB
EGAF50000276579 bam 19.4 GB
EGAF50000276580 bam 10.4 GB
EGAF50000276581 bam 6.0 GB
EGAF50000276585 bam 19.2 GB
EGAF50000276587 bam 5.1 GB
EGAF50000276589 bam 20.0 GB
EGAF50000276591 bam 17.6 GB
EGAF50000276592 bam 4.3 GB
EGAF50000276593 bam 7.0 GB
EGAF50000276595 bam 18.4 GB
EGAF50000276598 bam 6.6 GB
EGAF50000276599 bam 20.5 GB
EGAF50000276600 bam 5.1 GB
EGAF50000276601 bam 10.6 GB
EGAF50000276604 bam 20.4 GB
EGAF50000276605 bam 5.6 GB
EGAF50000276606 bam 17.8 GB
EGAF50000276607 bam 21.7 GB
EGAF50000276608 bam 20.6 GB
EGAF50000276609 bam 7.2 GB
EGAF50000276610 bam 16.1 GB
EGAF50000276611 bam 6.4 GB
EGAF50000276612 bam 4.5 GB
EGAF50000276615 bam 14.9 GB
EGAF50000276616 bam 5.0 GB
EGAF50000276618 bam 4.7 GB
EGAF50000276620 bam 12.0 GB
EGAF50000276622 bam 17.3 GB
EGAF50000276623 bam 21.9 GB
EGAF50000276626 bam 16.8 GB
EGAF50000276631 bam 8.6 GB
EGAF50000276633 bam 17.1 GB
EGAF50000276634 bam 14.4 GB
EGAF50000276635 bam 7.0 GB
EGAF50000276636 bam 15.5 GB
EGAF50000276637 bam 9.7 GB
EGAF50000276638 bam 19.3 GB
160 Files (1.9 TB)