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Peripheral T cell lymphoma (PTCL) Shallow Whole Genome Sequencing

Shallow Whole Genome Sequencing (sWGS) of 148 FFPE DNA samples from peripheral T cell lymphoma (PTCL) samples. Assoicated with the "Molecular biomarkers for stratification peripheral T cell lymphoma" study.

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Data originating from patient samples

The Amsterdam UMC, tumor genome analysis core, allows access to published datasets upon written application and signature of a Data Access Agreement (DAA). In addition, applications to clinical datasets require approval by a Data Access Committee (DAC), who assess whether the proposed work is allowed given patient consent, as well as the scientific purpose. To aid this process we ask you to provide the information below. Requests will be prioritised according to novelty of the research question. Applications with insufficient detail on objectives, justification, and methods/planned analyses are unlikely to be accepted. 1.Reference number for the dataset 2.Full legal name and address of university/institution 3.Name(s) of the Principle Investigator who will use the data: 4.Name(s) and job title(s) of any other investigators who will use the data: 5.Please provide a minimum of one reference to a publication that can be found on PubMed and where the Principle Investigator is an author: 6.How will the data be stored and where will it be stored? 7.What is the proposed study title and what are the objectives and outcomes of the study in which the data will be used 8.Please provide a brief justification or rationale for the proposed study (max 250 words) 9.Please provide a brief description of planned data analyses (max 250 words): 10.Will the results arising from use of the data be used for the creation of products for sale or for any commercial purpose?

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001006691 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00007645047 bam 407.0 MB
EGAF00007645048 bam 414.1 MB
EGAF00007645049 bam 440.8 MB
EGAF00007645050 bam 412.4 MB
EGAF00007645051 bam 417.9 MB
EGAF00007645052 bam 482.9 MB
EGAF00007645053 bam 369.0 MB
EGAF00007645054 bam 368.5 MB
EGAF00007645055 bam 431.2 MB
EGAF00007645056 bam 382.9 MB
EGAF00007645057 bam 357.3 MB
EGAF00007645058 bam 432.0 MB
EGAF00007645059 bam 430.6 MB
EGAF00007645060 bam 368.2 MB
EGAF00007645061 bam 381.1 MB
EGAF00007645062 bam 488.2 MB
EGAF00007645063 bam 412.6 MB
EGAF00007645064 bam 362.2 MB
EGAF00007645065 bam 1.2 GB
EGAF00007645066 bam 473.8 MB
EGAF00007645067 bam 435.9 MB
EGAF00007645068 bam 397.5 MB
EGAF00007645069 bam 339.2 MB
EGAF00007645070 bam 424.5 MB
EGAF00007645071 bam 369.0 MB
EGAF00007645072 bam 439.7 MB
EGAF00007645073 bam 462.4 MB
EGAF00007645074 bam 394.2 MB
EGAF00007645075 bam 446.0 MB
EGAF00007645076 bam 429.4 MB
EGAF00007645077 bam 437.7 MB
EGAF00007645078 bam 390.7 MB
EGAF00007645079 bam 476.3 MB
EGAF00007645080 bam 318.4 MB
EGAF00007645081 bam 508.0 MB
EGAF00007645082 bam 458.9 MB
EGAF00007645083 bam 463.0 MB
EGAF00007645084 bam 339.5 MB
EGAF00007645085 bam 264.1 MB
EGAF00007645086 bam 296.0 MB
EGAF00007645087 bam 327.7 MB
EGAF00007645088 bam 228.2 MB
EGAF00007645089 bam 322.7 MB
EGAF00007645090 bam 382.9 MB
EGAF00007645091 bam 416.5 MB
EGAF00007645092 bam 496.8 MB
EGAF00007645093 bam 435.2 MB
EGAF00007645094 bam 447.5 MB
EGAF00007645095 bam 450.4 MB
EGAF00007645096 bam 505.6 MB
EGAF00007645097 bam 463.9 MB
EGAF00007645098 bam 447.1 MB
EGAF00007645099 bam 485.2 MB
EGAF00007645100 bam 421.3 MB
EGAF00007645101 bam 317.3 MB
EGAF00007645102 bam 304.6 MB
EGAF00007645103 bam 428.3 MB
EGAF00007645104 bam 318.1 MB
EGAF00007645105 bam 501.8 MB
EGAF00007645106 bam 369.9 MB
EGAF00007645107 bam 348.4 MB
EGAF00007645108 bam 479.3 MB
EGAF00007645109 bam 449.3 MB
EGAF00007645110 bam 407.6 MB
EGAF00007645111 bam 435.9 MB
EGAF00007645112 bam 499.2 MB
EGAF00007645113 bam 239.8 MB
EGAF00007645114 bam 390.4 MB
EGAF00007645115 bam 603.9 MB
EGAF00007645116 bam 472.6 MB
EGAF00007645117 bam 691.2 MB
EGAF00007645118 bam 490.8 MB
EGAF00007645119 bam 537.9 MB
EGAF00007645120 bam 643.0 MB
EGAF00007645121 bam 256.7 MB
EGAF00007645122 bam 332.3 MB
EGAF00007645123 bam 508.2 MB
EGAF00007645124 bam 394.5 MB
EGAF00007645125 bam 460.4 MB
EGAF00007645126 bam 405.0 MB
EGAF00007645127 bam 424.7 MB
EGAF00007645128 bam 393.0 MB
EGAF00007645129 bam 438.7 MB
EGAF00007645130 bam 439.7 MB
EGAF00007645131 bam 495.0 MB
EGAF00007645132 bam 394.4 MB
EGAF00007645133 bam 527.2 MB
EGAF00007645134 bam 448.9 MB
EGAF00007645135 bam 241.6 MB
EGAF00007645136 bam 498.0 MB
EGAF00007645137 bam 494.2 MB
EGAF00007645138 bam 367.5 MB
EGAF00007645139 bam 441.8 MB
EGAF00007645140 bam 342.8 MB
EGAF00007645141 bam 504.5 MB
EGAF00007645142 bam 535.6 MB
EGAF00007645143 bam 510.2 MB
EGAF00007645144 bam 378.2 MB
EGAF00007645145 bam 597.9 MB
EGAF00007645146 bam 431.3 MB
EGAF00007645147 bam 352.2 MB
EGAF00007645148 bam 598.2 MB
EGAF00007645149 bam 358.8 MB
EGAF00007645150 bam 485.3 MB
EGAF00007645151 bam 707.1 MB
EGAF00007645152 bam 520.4 MB
EGAF00007645153 bam 401.9 MB
EGAF00007645154 bam 592.1 MB
EGAF00007645155 bam 465.6 MB
EGAF00007645156 bam 553.2 MB
EGAF00007645157 bam 335.2 MB
EGAF00007645158 bam 535.8 MB
EGAF00007645159 bam 487.7 MB
EGAF00007645160 bam 484.0 MB
EGAF00007645161 bam 443.5 MB
EGAF00007645162 bam 470.6 MB
EGAF00007645163 bam 365.0 MB
EGAF00007645164 bam 380.1 MB
EGAF00007645165 bam 308.4 MB
EGAF00007645166 bam 401.1 MB
EGAF00007645167 bam 409.8 MB
EGAF00007645168 bam 262.5 MB
EGAF00007645169 bam 420.8 MB
EGAF00007645170 bam 381.9 MB
EGAF00007645171 bam 407.8 MB
EGAF00007645172 bam 335.8 MB
EGAF00007645173 bam 319.8 MB
EGAF00007645174 bam 455.6 MB
EGAF00007645175 bam 466.1 MB
EGAF00007645176 bam 431.7 MB
EGAF00007645177 bam 412.0 MB
EGAF00007645178 bam 412.0 MB
EGAF00007645179 bam 251.2 MB
EGAF00007645180 bam 481.4 MB
EGAF00007645181 bam 16 Bytes
EGAF00007645182 bam 378.9 MB
EGAF00007645183 bam 445.5 MB
EGAF00007645184 bam 416.1 MB
EGAF00007645248 bam 450.5 MB
EGAF00007645249 bam 432.6 MB
EGAF00007645250 bam 316.1 MB
EGAF00007645251 bam 427.0 MB
EGAF00007645252 bam 490.9 MB
EGAF00007645253 bam 471.9 MB
EGAF00007645254 bam 471.3 MB
EGAF00007645255 bam 644.4 MB
EGAF00007645256 bam 551.8 MB
EGAF00007645257 bam 503.8 MB
148 Files (63.8 GB)