WES IDC samples
PDX samples of breast cancer IDC mouse models created from patient tumor material of the NKI. Genomescan prepared the samples according to the procedure for Hybridization Capture using the Agilent SureSelectXT Human All Exon V7 kit. The prepared libraries were sequenced with Illumina sequencing technology. The samples are in fastq format and consist of the following PDX samples: IDC001, IDC125, IDC147, IDC200, IDC233, IDC244, IDC251, IDC272, IDC278, IDC281 and ILC120.
- 21/02/2025
- 11 samples
- DAC: EGAC50000000055
- Technology: Illumina HiSeq 2500
Netherlands Cancer Institute - Antoni van Leeuwenhoek (NKI-AVL) general policy
Data is available under reasonable request. All data requests will be reviewed by the NKI IRB and must be supported by the Principal Investigator of the study. The researcher will need to sign a data access agreement with the NKI after approval.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS50000000398 | Cancer Genomics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF50000276734 | fastq.gz | 3.7 GB | ||
| EGAF50000276735 | fastq.gz | 3.8 GB | ||
| EGAF50000276736 | fastq.gz | 4.0 GB | ||
| EGAF50000276737 | fastq.gz | 3.8 GB | ||
| EGAF50000276738 | fastq.gz | 4.8 GB | ||
| EGAF50000276739 | fastq.gz | 5.0 GB | ||
| EGAF50000276740 | fastq.gz | 3.2 GB | ||
| EGAF50000276741 | fastq.gz | 3.3 GB | ||
| EGAF50000276744 | fastq.gz | 956.5 MB | ||
| EGAF50000276745 | fastq.gz | 930.3 MB | ||
| EGAF50000276746 | fastq.gz | 4.5 GB | ||
| EGAF50000276747 | fastq.gz | 4.6 GB | ||
| EGAF50000276748 | fastq.gz | 2.4 GB | ||
| EGAF50000276749 | fastq.gz | 2.4 GB | ||
| EGAF50000276750 | fastq.gz | 4.7 GB | ||
| EGAF50000276751 | fastq.gz | 4.6 GB | ||
| EGAF50000276752 | fastq.gz | 2.0 GB | ||
| EGAF50000276753 | fastq.gz | 2.0 GB | ||
| EGAF50000276754 | fastq.gz | 3.1 GB | ||
| EGAF50000276755 | fastq.gz | 3.0 GB | ||
| EGAF50000276756 | fastq.gz | 4.1 GB | ||
| EGAF50000276757 | fastq.gz | 4.2 GB | ||
| EGAF50000276758 | fastq.gz | 2.7 GB | ||
| EGAF50000276759 | fastq.gz | 2.7 GB | ||
| EGAF50000276760 | fastq.gz | 784.3 MB | ||
| EGAF50000276761 | fastq.gz | 769.7 MB | ||
| EGAF50000276762 | fastq.gz | 4.1 GB | ||
| EGAF50000276763 | fastq.gz | 4.0 GB | ||
| 28 Files (90.0 GB) | ||||